Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / deshaw/versioned-hdf5 issues and pull requests

#263 - Forbid the user from saving a dataset called "versions"

Issue - State: closed - Opened by peytondmurray about 1 year ago

#262 - Avoid quadratic runtime in delete_version

Pull Request - State: closed - Opened by ArvidJB about 1 year ago - 4 comments

#261 - delete_versions is very slow

Issue - State: closed - Opened by ArvidJB about 1 year ago

#260 - Add workflow to publish to pypi upon release tag

Pull Request - State: closed - Opened by peytondmurray about 1 year ago - 1 comment

#259 - 1.3.14 release

Pull Request - State: closed - Opened by asmeurer about 1 year ago

#258 - Move away from `rever` for releases

Issue - State: closed - Opened by peytondmurray about 1 year ago - 5 comments

#257 - Fix object dtype hashing

Pull Request - State: closed - Opened by peytondmurray about 1 year ago - 18 comments

#256 - Chunks incorrectly reused with object dtype datasets

Issue - State: closed - Opened by Exaphis about 1 year ago - 5 comments
Labels: high_priority

#255 - Test docs on PR; deploy docs on push to default branch

Pull Request - State: closed - Opened by peytondmurray about 1 year ago - 6 comments

#254 - Running tests generates unwanted test files

Issue - State: closed - Opened by peytondmurray about 1 year ago
Labels: tests

#253 - Cut release for latest changes

Issue - State: closed - Opened by ArvidJB over 1 year ago - 6 comments

#252 - Remove all travis-ci related configuration

Pull Request - State: closed - Opened by peytondmurray over 1 year ago

#251 - Add info log showing stats about data upon exiting stage_version context

Pull Request - State: closed - Opened by peytondmurray over 1 year ago - 3 comments

#250 - segfault at exit when an exception exited stage_version context

Issue - State: open - Opened by quarl over 1 year ago - 3 comments
Labels: question

#249 - Remove Travis, plan the additional CI jobs

Issue - State: closed - Opened by peytondmurray over 1 year ago

#248 - Correctly handle deletion of empty datasets

Pull Request - State: closed - Opened by peytondmurray over 1 year ago - 2 comments

#245 - Fixed a few issues interfering with running tests

Pull Request - State: closed - Opened by peytondmurray over 1 year ago

#244 - Error when combining delete_versions and h5repack on empty Dataset

Issue - State: closed - Opened by ArvidJB over 1 year ago - 12 comments
Labels: bug, help wanted

#242 - string dtypes test segfaults with latest h5py

Issue - State: closed - Opened by asmeurer over 1 year ago - 1 comment

#241 - Fix the prev_versions in delete_versions

Pull Request - State: closed - Opened by asmeurer over 1 year ago - 3 comments

#240 - delete_versions does not update "prev_version" properly, PyInf#9334

Issue - State: closed - Opened by ArvidJB over 1 year ago - 1 comment

#239 - Use hypothesis in the tests

Issue - State: open - Opened by asmeurer about 2 years ago
Labels: low_priority, Nice-to-have

#238 - delete_versions can corrupt files (PyInf#8559)

Issue - State: closed - Opened by ArvidJB about 2 years ago - 4 comments

#237 - 1.3.12 release

Pull Request - State: closed - Opened by asmeurer about 2 years ago

#236 - Test upstream h5py fixed length string fix on CI

Issue - State: open - Opened by asmeurer about 2 years ago - 2 comments
Labels: low_priority

#235 - Fix variable length strings in _recreate_virtual_dataset

Pull Request - State: closed - Opened by asmeurer about 2 years ago - 2 comments

#234 - Bug with delete_versions/_recreate_virtual_dataset with h5py version 3.7

Issue - State: closed - Opened by ArvidJB about 2 years ago - 4 comments

#233 - 1.3.11 release

Pull Request - State: closed - Opened by asmeurer about 2 years ago - 2 comments

#232 - Improve the performance of create_virtual_dataset for h5py 3

Pull Request - State: closed - Opened by asmeurer over 2 years ago - 8 comments

#231 - 1.3.10 release

Pull Request - State: closed - Opened by asmeurer over 2 years ago - 1 comment

#230 - Properly handle datasets that are fillvalue-only in delete_versions

Pull Request - State: closed - Opened by asmeurer over 2 years ago

#229 - Set current_version in delete_versions

Pull Request - State: closed - Opened by asmeurer over 2 years ago - 1 comment

#228 - Problem with delete_versions and fillvalue only Datasets

Issue - State: closed - Opened by ArvidJB over 2 years ago

#227 - Deleting last version corrupts file

Issue - State: closed - Opened by ArvidJB over 2 years ago

#226 - create_virtual_dataset is slow

Issue - State: open - Opened by ArvidJB over 2 years ago - 1 comment

#225 - Slice assign not working for multiple dimensions

Issue - State: closed - Opened by ArvidJB over 2 years ago - 3 comments

#224 - High dimensional versioned Datasets are slow to read

Issue - State: open - Opened by ArvidJB over 2 years ago

#223 - Add a changelog for 1.3.9

Pull Request - State: closed - Opened by asmeurer over 2 years ago

#222 - Fix delete_versions() with groups

Pull Request - State: closed - Opened by asmeurer over 2 years ago - 1 comment

#221 - 1.3.8

Pull Request - State: closed - Opened by asmeurer over 2 years ago - 1 comment

#220 - Dataset created without data is not virtual

Issue - State: closed - Opened by ArvidJB over 2 years ago - 2 comments

#219 - delete_versions does not support nested groups

Issue - State: closed - Opened by ArvidJB over 2 years ago

#218 - Don't return wrapper classes when the file is in read-only mode

Pull Request - State: closed - Opened by asmeurer over 2 years ago

#217 - Large overhead due to _add_to_data

Issue - State: closed - Opened by ArvidJB over 2 years ago - 6 comments

#216 - h5py reference counting bug with release 1.3.7

Issue - State: open - Opened by ArvidJB over 2 years ago - 5 comments

#215 - Add a changelog for a 1.3.7 release

Pull Request - State: closed - Opened by asmeurer over 2 years ago - 1 comment

#214 - Better delete_version algorithm

Pull Request - State: closed - Opened by asmeurer almost 3 years ago - 4 comments

#213 - Faster deleting of versions

Issue - State: closed - Opened by ArvidJB almost 3 years ago

#212 - Add a changelog entry for a 1.3.6 release

Pull Request - State: closed - Opened by asmeurer almost 3 years ago - 1 comment

#211 - Always enable lzf compression on the hashtable dataset

Pull Request - State: closed - Opened by asmeurer almost 3 years ago

#210 - Enable compression for hash_table

Issue - State: open - Opened by ArvidJB almost 3 years ago - 7 comments

#204 - Cythonize slow parts of the code

Issue - State: open - Opened by asmeurer about 3 years ago - 2 comments

#203 - 1.3.3 release

Pull Request - State: closed - Opened by asmeurer about 3 years ago - 1 comment

#202 - Fix reading a dataset with a mask

Pull Request - State: closed - Opened by asmeurer about 3 years ago

#201 - Selecting with bool mask broken?

Issue - State: closed - Opened by ArvidJB about 3 years ago - 6 comments

#200 - 1.3.2 release

Pull Request - State: closed - Opened by asmeurer about 3 years ago

#199 - Fix automatic docs updating on CI

Issue - State: closed - Opened by asmeurer about 3 years ago - 3 comments

#198 - Poor performance due to the default chunk size

Issue - State: closed - Opened by gtca about 3 years ago - 4 comments

#197 - Fix some issues with h5py 3.3

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#194 - Improve the performance for small chunks

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#193 - Poor read performance with many small chunks

Issue - State: closed - Opened by ArvidJB over 3 years ago

#192 - Large versioned file sizes

Issue - State: closed - Opened by ArvidJB over 3 years ago - 8 comments

#191 - Fix np.datetime64 handling when the second has 0 fractional part

Pull Request - State: closed - Opened by asmeurer over 3 years ago - 1 comment

#189 - 1.3.1 release

Pull Request - State: closed - Opened by asmeurer over 3 years ago - 1 comment

#188 - Improve performance in the case of many versions

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#187 - Write performance degradation with many versions

Issue - State: closed - Opened by ArvidJB over 3 years ago - 1 comment

#186 - More benchmarks related fixes

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#185 - Make some benchmarks more robust to older versions

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#184 - Run benchmarks on Travis

Issue - State: open - Opened by asmeurer over 3 years ago - 1 comment
Labels: low_priority, Nice-to-have

#183 - Fix some errors in the benchmarks

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#181 - 1.2.6 release

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#179 - chunks is lost when entire Dataset is overwritten

Issue - State: closed - Opened by ArvidJB over 3 years ago

#178 - Workaround the upstream h5py garbage collection issue

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#177 - 1.2.5 release

Pull Request - State: closed - Opened by asmeurer over 3 years ago - 2 comments

#176 - Remove codecov

Pull Request - State: closed - Opened by asmeurer over 3 years ago - 2 comments

#175 - Maintain attrs in DatasetWrapper

Pull Request - State: closed - Opened by asmeurer over 3 years ago - 2 comments

#174 - Attrs is wiped when writing to Dataset in 1.2.4

Issue - State: closed - Opened by ArvidJB over 3 years ago

#173 - Fix RST link syntax

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#172 - Add a link to the benchmarks suite in the docs

Pull Request - State: closed - Opened by asmeurer over 3 years ago - 1 comment

#171 - Store timestamps in an array

Issue - State: open - Opened by asmeurer over 3 years ago - 1 comment

#170 - get_version_by_timestamp is slow when datetime is passed

Issue - State: closed - Opened by ArvidJB over 3 years ago - 10 comments

#169 - Another slow write issue

Issue - State: closed - Opened by ArvidJB over 3 years ago - 6 comments

#168 - More performance improvements

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#167 - Slow writing with many small chunks

Issue - State: open - Opened by ArvidJB over 3 years ago - 4 comments

#166 - Log statistics at exit of stage_version context

Issue - State: closed - Opened by ArvidJB over 3 years ago - 5 comments

#165 - 1.2.3 release

Pull Request - State: closed - Opened by asmeurer over 3 years ago - 1 comment

#164 - Disallow accessing vfile[version] before version has been committed

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#163 - Fix the str dtype not being maintained from the fillvalue

Pull Request - State: closed - Opened by asmeurer over 3 years ago

#162 - Iterating over versions leads to id error

Issue - State: closed - Opened by ArvidJB over 3 years ago - 15 comments

#154 - name attribute is not consistent

Issue - State: open - Opened by asmeurer almost 4 years ago - 1 comment
Labels: Medium Priority

#152 - Version replaying

Pull Request - State: closed - Opened by asmeurer almost 4 years ago - 3 comments

#148 - Fixing things for h5py 3

Pull Request - State: closed - Opened by asmeurer almost 4 years ago - 5 comments

#143 - Deleting versions and garbage collecting

Issue - State: closed - Opened by ArvidJB almost 4 years ago - 4 comments
Labels: high_priority

#127 - Draft for blog post about Versioned HDF5 in Quansight Labs Blog

Issue - State: closed - Opened by melissawm about 4 years ago - 2 comments