Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / denisecailab/minian issues and pull requests

#270 - ContainsArrayError: path '' contains an array

Issue - State: closed - Opened by skisurfer13 9 months ago - 1 comment

#269 - Markup and Jinja2 Error

Issue - State: closed - Opened by skisurfer13 10 months ago - 1 comment

#269 - Markup and Jinja2 Error

Issue - State: closed - Opened by skisurfer13 10 months ago - 1 comment

#268 - Storing video requires too much memory

Issue - State: closed - Opened by jordiabante 10 months ago - 7 comments

#268 - Storing video requires too much memory

Issue - State: closed - Opened by jordiabante 10 months ago - 7 comments

#266 - No Module named Panel?

Issue - State: closed - Opened by cawarwick 10 months ago - 6 comments

#266 - No Module named Panel?

Issue - State: closed - Opened by cawarwick 10 months ago - 6 comments

#266 - No Module named Panel?

Issue - State: closed - Opened by cawarwick 10 months ago - 6 comments

#265 - Extracting Time Series Data and Calcium Traces CSV file

Issue - State: closed - Opened by skisurfer13 11 months ago - 2 comments

#265 - Extracting Time Series Data and Calcium Traces CSV file

Issue - State: closed - Opened by skisurfer13 11 months ago - 2 comments

#265 - Extracting Time Series Data and Calcium Traces CSV file

Issue - State: closed - Opened by skisurfer13 11 months ago - 2 comments

#263 - Interactive plot not playing

Issue - State: open - Opened by JohnStout about 1 year ago - 3 comments

#263 - Interactive plot not playing

Issue - State: open - Opened by JohnStout about 1 year ago - 3 comments

#263 - Interactive plot not playing

Issue - State: open - Opened by JohnStout about 1 year ago - 3 comments

#262 - Some downloading issues solved with mamba

Issue - State: open - Opened by JohnStout about 1 year ago

#261 - Trouble Installing Minian

Issue - State: open - Opened by carlosmckinneyjr about 1 year ago - 1 comment

#260 - build(deps): bump jinja2 from 2.11.3 to 3.1.3 in /requirements

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#260 - build(deps): bump jinja2 from 2.11.3 to 3.1.3 in /requirements

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#260 - build(deps): bump jinja2 from 2.11.3 to 3.1.3 in /requirements

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#258 - Problem with Installing Minian

Issue - State: open - Opened by JohnNan123 about 1 year ago - 4 comments

#258 - Problem with Installing Minian

Issue - State: open - Opened by JohnNan123 about 1 year ago - 4 comments

#258 - Problem with Installing Minian

Issue - State: open - Opened by JohnNan123 about 1 year ago - 4 comments

#257 - Fixing issues with minian installation and running

Issue - State: open - Opened by UlloaSeverinoLab about 1 year ago

#257 - Fixing issues with minian installation and running

Issue - State: open - Opened by UlloaSeverinoLab about 1 year ago

#257 - Fixing issues with minian installation and running

Issue - State: open - Opened by UlloaSeverinoLab about 1 year ago

#255 - Repo is humongous!

Issue - State: open - Opened by sneakers-the-rat about 1 year ago - 1 comment

#255 - Repo is humongous!

Issue - State: open - Opened by sneakers-the-rat about 1 year ago - 1 comment

#255 - Repo is humongous!

Issue - State: open - Opened by sneakers-the-rat about 1 year ago - 1 comment

#254 - Issue in updating mask for motion correction

Issue - State: open - Opened by halake97 about 1 year ago - 1 comment

#254 - Issue in updating mask for motion correction

Issue - State: open - Opened by halake97 about 1 year ago - 1 comment

#253 - add logo to readme

Pull Request - State: open - Opened by bendichter about 1 year ago

#253 - add logo to readme

Pull Request - State: open - Opened by bendichter about 1 year ago

#253 - add logo to readme

Pull Request - State: open - Opened by bendichter about 1 year ago

#252 - Installation issue

Issue - State: open - Opened by AlexLM96 over 1 year ago - 3 comments

#252 - Installation issue

Issue - State: open - Opened by AlexLM96 over 1 year ago - 3 comments

#252 - Installation issue

Issue - State: open - Opened by AlexLM96 over 1 year ago - 3 comments

#251 - VArrayViewer not displaying video, but a frozen frame.

Issue - State: closed - Opened by anna-teruel over 1 year ago - 2 comments

#251 - VArrayViewer not displaying video, but a frozen frame.

Issue - State: closed - Opened by anna-teruel over 1 year ago - 2 comments

#251 - VArrayViewer not displaying video, but a frozen frame.

Issue - State: closed - Opened by anna-teruel over 1 year ago - 2 comments

#249 - Errors occur every frame in the interactive video

Issue - State: closed - Opened by HuangLMU over 1 year ago - 1 comment

#249 - Errors occur every frame in the interactive video

Issue - State: closed - Opened by HuangLMU over 1 year ago - 1 comment

#249 - Errors occur every frame in the interactive video

Issue - State: closed - Opened by HuangLMU over 1 year ago - 1 comment

#248 - Finding DF/F

Issue - State: open - Opened by bahaaaldin214 over 1 year ago - 1 comment

#247 - Bokeh visualization does not work in Windows 11

Issue - State: open - Opened by vsekulic over 1 year ago - 2 comments

#245 - corupted video during downloading

Issue - State: open - Opened by leodiej over 1 year ago - 2 comments

#242 - Export data unavailable

Issue - State: open - Opened by leodiej almost 2 years ago - 2 comments

#241 - error loading new video

Issue - State: open - Opened by leodiej almost 2 years ago - 9 comments

#238 - Variables differ in shapes after retrieving it

Issue - State: open - Opened by tracychenxy almost 2 years ago

#237 - Questions about the running results

Issue - State: open - Opened by lance11320 almost 2 years ago - 1 comment

#235 - Group not found

Issue - State: open - Opened by Mtkostecki almost 2 years ago - 1 comment

#234 - Error

Issue - State: open - Opened by Mtkostecki almost 2 years ago

#232 - Incompatible packages reinstalling Minian

Issue - State: open - Opened by anna-teruel about 2 years ago - 5 comments

#231 - Update_spatial value error for first spatial update

Issue - State: open - Opened by britttheuser about 2 years ago - 2 comments

#229 - ValueError: cannot reshape array of size 4238640000 into shape (28735,600,600)

Issue - State: open - Opened by zz-rezaei about 2 years ago - 5 comments

#225 - Problem with merge function

Issue - State: open - Opened by krusean about 2 years ago

#224 - Adjust to run with newer dependencies

Pull Request - State: open - Opened by ximion over 2 years ago - 1 comment

#221 - Motion correction issue

Issue - State: open - Opened by AnneHstudent over 2 years ago

#218 - build: use mamba to install minian

Pull Request - State: closed - Opened by phildong over 2 years ago - 1 comment

#217 - Cells merged after 2nd spatial update

Issue - State: open - Opened by ElhamGhanbarian over 2 years ago - 1 comment

#216 - PermissionError

Issue - State: open - Opened by zz-rezaei over 2 years ago

#214 - KeyError: 'matplotlib'

Issue - State: open - Opened by neurozac over 2 years ago - 1 comment

#212 - Unable to get C_raw variable

Issue - State: open - Opened by FrancescoPaoloUlloaSeverino over 2 years ago - 1 comment

#210 - build(deps): bump numpy from 1.20.2 to 1.22.0 in /requirements

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#209 - build(deps): bump distributed from 2021.2.0 to 2021.10.0 in /requirements

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#207 - pin jinja2 version to <3

Pull Request - State: closed - Opened by phildong over 2 years ago - 1 comment

#206 - Problem with jinja2

Issue - State: closed - Opened by krusean over 2 years ago - 2 comments

#205 - updated update_meta()

Pull Request - State: open - Opened by wmau over 2 years ago

#204 - Motion Correction Video Frame Rate

Issue - State: open - Opened by svrks over 2 years ago - 1 comment

#202 - computation is almost frozen in "Save motion" section

Issue - State: open - Opened by zz-rezaei almost 3 years ago - 1 comment

#200 - KilledWorker in very long recordings

Issue - State: open - Opened by zz-rezaei almost 3 years ago - 1 comment

#199 - ValueError in generate_videos() call during 6.7 visualization step

Issue - State: open - Opened by simonfisher almost 3 years ago - 1 comment

#197 - Incompatibility new release jinja2

Issue - State: closed - Opened by AlexLM96 almost 3 years ago - 3 comments

#196 - Unbound local Error

Issue - State: open - Opened by zz-rezaei almost 3 years ago - 1 comment

#193 - Get correct frame amount for video files without nb_frames property & allow codec selection

Pull Request - State: closed - Opened by ximion almost 3 years ago - 7 comments

#183 - Inconsistant number of frames after writing motion corrected video

Issue - State: closed - Opened by chrisda13 almost 3 years ago - 1 comment

#182 - Support for volumetric data

Issue - State: closed - Opened by MaximilianHoffmann almost 3 years ago - 1 comment

#180 - avoid syntax error in `update_spatial` returns

Pull Request - State: closed - Opened by phildong almost 3 years ago

#179 - build(deps): bump numpy from 1.20.2 to 1.21.0 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#178 - feat: use least square to produce proper scaling in temporal components

Pull Request - State: closed - Opened by phildong almost 3 years ago - 1 comment

#177 - does file order in pre-processing code matter?

Issue - State: closed - Opened by samaramiller about 3 years ago - 1 comment

#176 - Pinning FFTW version

Pull Request - State: closed - Opened by slarson about 3 years ago - 3 comments

#172 - ValueError while generate_videos on the jupyter notebook

Issue - State: closed - Opened by jiwonkim2020 about 3 years ago

#171 - fix: rescale with normalizing factor when using `normalize` parameter

Pull Request - State: closed - Opened by phildong about 3 years ago - 1 comment

#170 - First Temporal Update - GroupNotFoundError

Issue - State: closed - Opened by Bilalgp about 3 years ago - 4 comments

#169 - fix: fix unit id mismatch in spatial parameter exploration

Pull Request - State: closed - Opened by phildong about 3 years ago - 1 comment

#168 - Hello,

Issue - State: open - Opened by tom221085 about 3 years ago - 7 comments

#163 - Spatial update

Issue - State: closed - Opened by Antorithms over 3 years ago - 3 comments

#162 - build(deps): bump dask from 2021.2.0 to 2021.10.0 in /requirements

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#161 - Error temporal sampling with 'mean' strategy

Issue - State: open - Opened by ZachPenn over 3 years ago - 1 comment
Labels: bug

#160 - Error during background removal

Issue - State: closed - Opened by Antorithms over 3 years ago - 1 comment

#159 - Extension not supported.

Issue - State: open - Opened by harshk95 over 3 years ago - 2 comments

#158 - feat: detrend with median filter

Pull Request - State: closed - Opened by phildong over 3 years ago - 1 comment