Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / dellytools/delly issues and pull requests
#365 - ALT field only contains symbolic <INS>, <DEL>, ... tags instead of actual ALT nucleotide sequence
Issue -
State: open - Opened by JoannaTan 8 months ago
#364 - about somatic SV calling
Issue -
State: open - Opened by dongjuleem 8 months ago
#363 - somatic pre filtering issue
Issue -
State: closed - Opened by NidhiAgrawal27 9 months ago
- 2 comments
#362 - min and max SV size
Issue -
State: closed - Opened by skeremaydin 9 months ago
- 3 comments
#361 - merging vcfs of various SV types (delly or bcftools?)
Issue -
State: closed - Opened by shaghayeghsoudi 9 months ago
- 2 comments
Labels: question
#360 - Somatic CNA's with tumor purity
Issue -
State: open - Opened by yashcrux 9 months ago
- 3 comments
Labels: question
#359 - Question about Algorithm Updates in Delly V2
Issue -
State: open - Opened by ipstone 10 months ago
- 1 comment
Labels: question
#358 - Delly vcf output
Issue -
State: open - Opened by Ana1335 10 months ago
- 3 comments
Labels: question
#357 - END position changed between delly 1.1.6 and 1.1.7
Issue -
State: closed - Opened by Stikus 10 months ago
- 2 comments
Labels: question
#356 - Delly call output --only have one type of SV (Deletions)
Issue -
State: closed - Opened by XIAO2Mark 12 months ago
- 1 comment
#355 - Delly call on WGS data
Issue -
State: closed - Opened by Ceonham 12 months ago
- 3 comments
Labels: bug
#354 - Realignment and break points
Issue -
State: open - Opened by mmnikolic about 1 year ago
- 3 comments
Labels: question
#353 - call CNV using a PON
Issue -
State: closed - Opened by lmanchon about 1 year ago
- 1 comment
#352 - MAPQ quality threshold
Issue -
State: closed - Opened by AriadnaColmeneroCobo about 1 year ago
- 1 comment
#351 - Please increase the window size. Coverage is too low! error
Issue -
State: open - Opened by rezenman about 1 year ago
#350 - One SV with two records
Issue -
State: closed - Opened by jackzhong1995 about 1 year ago
- 1 comment
#349 - Two INV just differ by only 1 base
Issue -
State: closed - Opened by jackzhong1995 about 1 year ago
- 4 comments
#348 - How to calculate the Fusion mutation frequency from the known information in VCF?
Issue -
State: closed - Opened by RADIOMUMM about 1 year ago
- 1 comment
#347 - Why SRs are reported when no PEs are indicated
Issue -
State: closed - Opened by AriadnaColmeneroCobo about 1 year ago
- 1 comment
#346 - how to merge the SV into genome
Issue -
State: closed - Opened by tinyfallen about 1 year ago
- 3 comments
#345 - Delly call sv by ont long-reads
Issue -
State: closed - Opened by jackzhong1995 about 1 year ago
- 2 comments
#344 - About the INS sequence in vcf output
Issue -
State: open - Opened by ClarenceHsiang about 1 year ago
- 4 comments
#343 - About the output format
Issue -
State: closed - Opened by ClarenceHsiang about 1 year ago
- 2 comments
#342 - SVLEN missing in output / INSLEN in all output
Issue -
State: open - Opened by NicolaLady about 1 year ago
- 1 comment
#341 - SV calling
Issue -
State: open - Opened by fangling0913 about 1 year ago
#339 - Excluded regions
Issue -
State: open - Opened by bounlu about 1 year ago
- 1 comment
#338 - `BAM` file type
Issue -
State: closed - Opened by bounlu about 1 year ago
- 3 comments
#337 - Delly on WGBS data
Issue -
State: open - Opened by bounlu about 1 year ago
- 1 comment
#336 - Creating a mappability map
Issue -
State: open - Opened by Immortal2333 about 1 year ago
- 1 comment
#335 - Creating a mappability map
Issue -
State: closed - Opened by Immortal2333 about 1 year ago
- 1 comment
#334 - Delly on WGBS / methylseq data
Issue -
State: closed - Opened by bounlu about 1 year ago
- 1 comment
#333 - calling results for SR and RR/RV
Issue -
State: closed - Opened by asaki1986 about 1 year ago
- 2 comments
#332 - BAM files have different number of chromosomes!
Issue -
State: closed - Opened by nash5202 about 1 year ago
- 2 comments
#331 - very quick runtime
Issue -
State: closed - Opened by heidihyang about 1 year ago
#330 - apply delly on RNA sequencing data
Issue -
State: closed - Opened by asaki1986 about 1 year ago
- 1 comment
#329 - CNV segmentation issue
Issue -
State: open - Opened by jiadong324 about 1 year ago
- 3 comments
Labels: enhancement
#328 - split-read assembly fault (Segmentation fault (core dumped))
Issue -
State: open - Opened by zhanghanqing1992 over 1 year ago
- 4 comments
#327 - The index file is older than the data file
Issue -
State: closed - Opened by mxiong2 over 1 year ago
- 1 comment
#326 - delly_v1.1.6 cnv failed
Issue -
State: open - Opened by lmanchon over 1 year ago
- 1 comment
#325 - Mappability map for the latest human reference genome T2T-CHM13
Issue -
State: open - Opened by zacshi over 1 year ago
- 5 comments
Labels: enhancement
#324 - delly sometimes can't get the RR RV info,and some question about the output
Issue -
State: open - Opened by litun-fkby over 1 year ago
- 7 comments
#323 - Files for input
Issue -
State: open - Opened by hanpengluo over 1 year ago
- 2 comments
Labels: question
#322 - How to identify exact break points of the BNDs (interchromosomal translications)?
Issue -
State: closed - Opened by MehmetGoktay over 1 year ago
- 3 comments
#321 - Warning: Sample has a non-default paired-end layout!
Issue -
State: open - Opened by z1242099843 over 1 year ago
- 2 comments
#320 - Short insert size
Issue -
State: closed - Opened by oghzzang over 1 year ago
- 4 comments
Labels: question
#319 - add option to delly filter to soft-filter variants
Pull Request -
State: closed - Opened by lindenb over 1 year ago
#318 - Feature request: Delly filter + soft filter.
Issue -
State: closed - Opened by lindenb over 1 year ago
- 1 comment
#317 - Get STRAND INFO in the vcf output
Issue -
State: open - Opened by Sreelekshmi-291 over 1 year ago
- 1 comment
#316 - fatal error: boost/graph/adjacency_list.hpp
Issue -
State: closed - Opened by volcano1998 over 1 year ago
#315 - FATAL: kernel too old
Issue -
State: closed - Opened by xiekunwhy over 1 year ago
- 1 comment
#314 - Understanding DELLY (Version: 0.9.1) output VCF file for BND
Issue -
State: closed - Opened by tanbiswas almost 2 years ago
- 3 comments
Labels: question
#313 - 、
Issue -
State: closed - Opened by Yixiangzhang1996 almost 2 years ago
#312 - How to call and genotype only with split reads?
Issue -
State: closed - Opened by FrankFeng2022 almost 2 years ago
- 4 comments
Labels: question
#311 - Consensus sequences
Issue -
State: open - Opened by ceromova almost 2 years ago
- 5 comments
Labels: question
#310 - Segmentation fault (core dumped) delly cnv
Issue -
State: open - Opened by RochaLAJ almost 2 years ago
- 5 comments
Labels: bug
#309 - Redirecting temporary directory
Issue -
State: closed - Opened by kimin0402 almost 2 years ago
- 2 comments
#308 - "Alignment file is missing" error when the input bam file is compressed using PetaGene
Issue -
State: closed - Opened by ilavidas almost 2 years ago
- 2 comments
Labels: enhancement
#307 - Compile error for multi-threading mode
Issue -
State: open - Opened by ryao-mdanderson almost 2 years ago
- 8 comments
#306 - Warning: Sample has a non-default paired-end layout!
Issue -
State: open - Opened by liujiaxin7 almost 2 years ago
- 6 comments
Labels: question
#305 - Problems encountered in germline SV calling and germline SV filter
Issue -
State: closed - Opened by tengwen2018 almost 2 years ago
#304 - make all error
Issue -
State: closed - Opened by HeejunJang about 2 years ago
- 2 comments
#303 - Delly bcf output annotation
Issue -
State: closed - Opened by jiaren-zhang about 2 years ago
- 1 comment
#302 - Strange distribution of QUAL values
Issue -
State: closed - Opened by miyakokodama about 2 years ago
- 1 comment
#301 - Feature request: option to use multiple types at once
Issue -
State: closed - Opened by nvnieuwk about 2 years ago
- 2 comments
#300 - About SV detection of Pacbio Hifi
Issue -
State: closed - Opened by ClarenceHsiang about 2 years ago
- 2 comments
#299 - There is a big difference between PE,SR and DV,RV. Why?
Issue -
State: closed - Opened by hhzhongchn about 2 years ago
- 2 comments
#298 - core dumped with delly merge
Issue -
State: closed - Opened by chenlu-Liu about 2 years ago
- 6 comments
#297 - segmentation fault at split reads assembly point
Issue -
State: closed - Opened by skose82 about 2 years ago
- 3 comments
#296 - Another sample stuck at SV annotation
Issue -
State: closed - Opened by holtgrewe about 2 years ago
- 3 comments
#295 - About delly filter -s samples.tsv
Issue -
State: open - Opened by ClarenceHsiang about 2 years ago
- 6 comments
#294 - A question about merge parameter -p
Issue -
State: open - Opened by zmyzhaomingyang about 2 years ago
- 1 comment
#293 - Difference between germline SV vs germline CNV?
Issue -
State: closed - Opened by kvn95ss over 2 years ago
- 3 comments
#292 - All runs stuck at 50% Split-read assembly
Issue -
State: closed - Opened by andreaswallberg over 2 years ago
- 2 comments
Labels: question
#291 - multi-threading mode compilation errors
Issue -
State: closed - Opened by fangpingmu over 2 years ago
- 8 comments
#290 - SR query
Issue -
State: closed - Opened by hannahgoldswain over 2 years ago
- 1 comment
#289 - interpretation of direction values not matching known logic
Issue -
State: closed - Opened by abhatta-bbi over 2 years ago
- 2 comments
#288 - Errors building with Spack
Issue -
State: closed - Opened by justbennet over 2 years ago
- 2 comments
Labels: wontfix
#287 - Germline SV calling (Questions)
Issue -
State: closed - Opened by Taalouane over 2 years ago
- 3 comments
#286 - Delly output to stdout
Issue -
State: closed - Opened by fgvieira over 2 years ago
- 5 comments
Labels: enhancement
#285 - delly2 outputs duplicate results?
Issue -
State: closed - Opened by GuoYu-Peng over 2 years ago
- 1 comment
Labels: question
#284 - compilation terminated
Issue -
State: closed - Opened by CLAIRE-cuhk over 2 years ago
- 4 comments
Labels: question
#283 - Can delly be used with viruses?
Issue -
State: closed - Opened by hannahgoldswain over 2 years ago
- 1 comment
#282 - Is it possible to access an alignment file from an S3 bucket?
Issue -
State: open - Opened by james-guevara over 2 years ago
- 5 comments
Labels: enhancement
#281 - DELLY with conda
Issue -
State: closed - Opened by josiejenyne over 2 years ago
- 2 comments
Labels: question
#280 - Speed Issue Delly
Issue -
State: closed - Opened by skose82 over 2 years ago
- 1 comment
#279 - Speed Issue Delly
Issue -
State: closed - Opened by skose7 over 2 years ago
#278 - Interpretation of Delly SV Call output
Issue -
State: closed - Opened by vivekruhela over 2 years ago
- 1 comment
#277 - delly: error while loading shared libraries: libboost_iostreams.so.1.67.0: cannot open shared object file: No such file or directory
Issue -
State: closed - Opened by GENEDECODERS over 2 years ago
- 5 comments
#276 - symbol lookup error with bioconda delly 0.9.1
Issue -
State: closed - Opened by jdm204 over 2 years ago
- 2 comments
#275 - Germline SV calling Whole exome sequence
Issue -
State: closed - Opened by smkumaran over 2 years ago
- 2 comments
#274 - Delly installation in ubuntu 9.3.0-17ubuntu1~20.04
Issue -
State: closed - Opened by smkumaran over 2 years ago
- 2 comments
#273 - Output BAM with tags to associate reads back to SV calls?
Issue -
State: closed - Opened by nh13 over 2 years ago
- 6 comments
#272 - Starting from which version does Delly2 specify
Issue -
State: closed - Opened by davidroberson over 2 years ago
- 2 comments
#271 - Evidence reads
Issue -
State: closed - Opened by panguangze over 2 years ago
- 1 comment
#270 - Unexpected genotyping and filtering results
Issue -
State: closed - Opened by MathijsSanders almost 3 years ago
- 3 comments
Labels: bug
#269 - Mappability map for T2T CHM13
Issue -
State: closed - Opened by davidebolo1993 almost 3 years ago
- 3 comments
#268 - Multithreading with Conda version
Issue -
State: closed - Opened by astulaaa almost 3 years ago
- 3 comments
#267 - Error of Delly Segmentation fault(core dumped)
Issue -
State: closed - Opened by pabloangulo7 almost 3 years ago
- 15 comments
#266 - Inquiry about -x excl file and option
Issue -
State: closed - Opened by OZTaekOppa almost 3 years ago
- 5 comments