Ecosyste.ms: Issues

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GitHub / dcdanko/MD2 issues and pull requests

#33 - Using microbe directory two on custom table

Issue - State: open - Opened by nksjpl over 4 years ago

#32 - Availability of code for extracting attributes from databases / studies

Issue - State: open - Opened by lgeistlinger over 4 years ago - 1 comment

#31 - Clean Up TMD

Pull Request - State: closed - Opened by dcdanko about 5 years ago

#30 - Updated codes and tables

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#29 - Code Review Sep 2019

Pull Request - State: closed - Opened by dcdanko over 5 years ago

#28 - EMP downstreaming added

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#27 - Updated codes and output

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#26 - Test differences in taxonomic profiles using abundances

Issue - State: closed - Opened by dcdanko over 5 years ago

#25 - EMP

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#24 - EMP dataset conversion

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#23 - EMP and other 16S - conversion of Biom tables for MD2

Issue - State: closed - Opened by Chandrima-04 over 5 years ago - 1 comment

#22 - Issue #20

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#21 - Updated MetaSUB files

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#20 - Convert location counts to ASN

Issue - State: closed - Opened by dcdanko over 5 years ago - 3 comments

#19 - Fill in taxonomic ranks from relatives

Issue - State: closed - Opened by dcdanko over 5 years ago - 4 comments

#18 - Incorporate MetaSUB Data

Issue - State: closed - Opened by dcdanko over 5 years ago - 6 comments

#17 - Generate Statistics for MD2 Table

Issue - State: closed - Opened by dcdanko over 5 years ago - 2 comments

#16 - Changes in row deletion method

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#15 - New codes and tables for cleaned up files

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#14 - Triage columns and rows

Issue - State: closed - Opened by dcdanko over 5 years ago

#13 - Add directions for building MD2 Table to README

Issue - State: closed - Opened by dcdanko over 5 years ago - 1 comment

#12 - Write Script to Clean Merged MD2

Issue - State: closed - Opened by dcdanko over 5 years ago - 2 comments

#11 - Updates for creating merged tables

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#10 - New functionality added- Merge all datasets

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#9 - Update README.md

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#8 - Get data table for the following

Issue - State: closed - Opened by Chandrima-04 over 5 years ago - 2 comments

#7 - Update README.md

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#6 - Python Script to Compare Two Metagenomic Files

Pull Request - State: closed - Opened by Chandrima-04 over 5 years ago

#5 - Compare two files with metagenomic information

Issue - State: closed - Opened by Chandrima-04 over 5 years ago - 2 comments

#4 - Write a useful README

Issue - State: closed - Opened by dcdanko over 5 years ago

#3 - Write script that matches filtered taxa to existing data tables

Issue - State: closed - Opened by dcdanko over 5 years ago

#2 - Write script to filter taxonomy

Issue - State: closed - Opened by dcdanko over 5 years ago - 1 comment

#1 - Write script to parse NCBI taxonomy into a useful file

Issue - State: closed - Opened by dcdanko over 5 years ago - 2 comments