dbmi-pitt/nobletools issues and pull requests

#41 - Update LICENSE information

Issue - State: open - Opened by jonasseglare about 3 years ago

#40 - Concept Scoring

Issue - State: open - Opened by MalloryC-MSKCC over 4 years ago

#39 - Improve README

Issue - State: open - Opened by wdduncan over 4 years ago

#38 - Potential error/conflict with newer version of Java

Issue - State: open - Opened by waughsh about 5 years ago - 1 comment

#37 - Custom ontology codes & concept limits

Issue - State: open - Opened by Alekos92 over 6 years ago

#36 - NullPointerException on seemingly random texts

Issue - State: open - Opened by oersted over 6 years ago - 1 comment

#35 - Importing NCI Metathesaurus (or Any Other Source) Seems to Stall Indefinitely

Issue - State: open - Opened by Superraptor about 7 years ago - 2 comments

#34 - NM: Doesn’t pick up number value when number spelled out in text

Issue - State: closed - Opened by mecst76 almost 8 years ago - 5 comments
Labels: bug

#33 - Importing UMLS LOINC ontology causes NobleCoder to detect gibberish

Issue - State: open - Opened by trivedigaurav almost 8 years ago - 1 comment

#32 - Failed to import Metathesaurus

Issue - State: open - Opened by trivedigaurav almost 8 years ago - 2 comments

#31 - UMLS Ontologies

Issue - State: closed - Opened by trivedigaurav almost 8 years ago - 2 comments

#30 - Specifying multiple terminologies at once

Issue - State: open - Opened by trivedigaurav almost 8 years ago - 1 comment

#29 - Include line numbers in TSV files

Issue - State: closed - Opened by trivedigaurav almost 8 years ago - 1 comment

#28 - Adding build and usage help

Pull Request - State: open - Opened by trivedigaurav almost 8 years ago

#27 - Running the coder on single files

Issue - State: open - Opened by trivedigaurav almost 8 years ago

#26 - Command line option to generate TSV only

Issue - State: open - Opened by trivedigaurav almost 8 years ago

#25 - Numeric expressions should follow equivalence axioms stating units

Issue - State: closed - Opened by mecst76 almost 8 years ago - 2 comments
Labels: bug

#24 - Document section not detected/not triggering rejected annotation

Issue - State: closed - Opened by mecst76 almost 8 years ago - 3 comments
Labels: bug

#23 - better abbreviation sense disambiguation

Issue - State: open - Opened by tseytlin almost 8 years ago
Labels: enhancement

#22 - Complement of section types not being used correctly by NM

Issue - State: closed - Opened by mecst76 almost 8 years ago - 2 comments
Labels: bug

#21 - Local body site modifiers not assigned correctly

Issue - State: open - Opened by mecst76 almost 8 years ago - 2 comments
Labels: bug

#20 - Recognized concepts fail to tigger Annotation or Rejected Annotation

Issue - State: closed - Opened by mecst76 almost 8 years ago - 1 comment
Labels: bug

#19 - Misparse of conjunctions

Issue - State: open - Opened by mecst76 almost 8 years ago - 1 comment
Labels: bug

#18 - Global modifiers going beyond paragraph boundary

Issue - State: open - Opened by mecst76 almost 8 years ago - 1 comment
Labels: bug

#17 - Linguistic modifiers missed

Issue - State: closed - Opened by mecst76 almost 8 years ago - 2 comments
Labels: bug

#16 - NobleMentions: Lexical item with longer span not associated with anchor

Issue - State: closed - Opened by mecst76 about 8 years ago - 2 comments
Labels: bug

#15 - NobleMentions: Anchor does not trigger creation of annotation

Issue - State: closed - Opened by mecst76 about 8 years ago - 2 comments
Labels: bug

#14 - NobleMentions: Compound anchors fail to trigger an annotation

Issue - State: closed - Opened by mecst76 about 8 years ago - 3 comments
Labels: bug

#13 - Noble Mentions: Synonyms produce overlapping annotations

Issue - State: closed - Opened by mecst76 about 8 years ago
Labels: bug

#12 - Noble Mentions: Use global modifier value over local modifier when global is more specific

Issue - State: closed - Opened by mecst76 about 8 years ago - 1 comment
Labels: enhancement

#11 - Imported ontologies do not load in Noble Mentions

Issue - State: closed - Opened by mecst76 about 8 years ago - 1 comment
Labels: bug

#10 - Explanation of the heuristics used to score matches are not easily accessible

Issue - State: open - Opened by LLCampos about 8 years ago - 1 comment

#9 - Bug in GUI? Overlap Matching Option

Issue - State: open - Opened by LLCampos about 8 years ago - 1 comment

#8 - Problem when importing with BioPortal - RadLex

Issue - State: open - Opened by LLCampos about 8 years ago - 2 comments

#7 - implement rules to reduce synonymy from UMLS

Issue - State: closed - Opened by tseytlin about 8 years ago - 1 comment

#6 - String index out of range Exception

Issue - State: closed - Opened by tseytlin about 8 years ago - 2 comments

#5 - multiple preferredTerms on terminology export

Issue - State: open - Opened by tseytlin about 8 years ago

#4 - create a terminology content reporting mechanism

Issue - State: open - Opened by tseytlin about 8 years ago
Labels: enhancement

#3 - implement abbreviation whitelist in NobleCoder

Issue - State: open - Opened by tseytlin about 8 years ago
Labels: enhancement

#2 - Use semantic types defined in ConText to process semantic modifiers

Issue - State: closed - Opened by tseytlin about 8 years ago - 1 comment
Labels: enhancement

#1 - Create a higher level information extraction framework based on Schema.owl

Issue - State: closed - Opened by tseytlin about 8 years ago - 1 comment
Labels: enhancement

GitHub / dbmi-pitt/nobletools issues and pull requests