Ecosyste.ms: Issues

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GitHub / dbmi-bgm/magma issues and pull requests

#40 - More wrangler utilities and options to create MWFRs

Pull Request - State: open - Opened by alexander-veit 18 days ago

#39 - Add RNA-Seq MWFR for SMaHT

Pull Request - State: closed - Opened by alexander-veit 6 months ago

#38 - Add short-read fastqc MetaworkflowRun

Pull Request - State: closed - Opened by alexander-veit 6 months ago

#37 - Ignore retracted files when creating MetaWorkflowRuns

Pull Request - State: closed - Opened by alexander-veit 6 months ago

#35 - Support for Python 3.12

Pull Request - State: closed - Opened by dmichaels-harvard 7 months ago

#34 - Update dependencies

Pull Request - State: closed - Opened by sarahgonicholson 8 months ago

#33 - SN wrangler_utils add set_property

Pull Request - State: closed - Opened by sarahgonicholson 8 months ago - 1 comment

#32 - Handle multiple analytes per library

Pull Request - State: closed - Opened by drio18 8 months ago

#31 - More MWFR creation function + wrangler utils

Pull Request - State: closed - Opened by alexander-veit 9 months ago

#30 - Generalize tibanna-ff dependency

Pull Request - State: closed - Opened by alexander-veit 10 months ago

#29 - Use click ^7 for compatibility reasons

Pull Request - State: closed - Opened by alexander-veit 10 months ago

#28 - Automated MetaWorkflowRun creation from file sets

Pull Request - State: closed - Opened by alexander-veit 11 months ago

#27 - Add `mwfr_from_input`

Pull Request - State: closed - Opened by alexander-veit 12 months ago

#26 - Treat QC rulesets as parameters

Pull Request - State: closed - Opened by alexander-veit about 1 year ago

#25 - Changed dcicutils from 8.0.0 to ^8.0.0.

Pull Request - State: closed - Opened by dmichaels-harvard about 1 year ago

#24 - Get Magma ready for SMaHT

Pull Request - State: closed - Opened by alexander-veit about 1 year ago

#23 - Upgrade Python 3.11

Pull Request - State: closed - Opened by dmichaels-harvard over 1 year ago

#22 - Validation Updates + Dimensionality Tweaks

Pull Request - State: closed - Opened by drio18 over 1 year ago

#21 - added gather_input and fixed shards defintion

Pull Request - State: closed - Opened by B3rse over 1 year ago - 3 comments

#20 - Somatic Analysis MWFR Creation

Pull Request - State: closed - Opened by drio18 over 1 year ago

#19 - Added publish

Pull Request - State: closed - Opened by dmichaels-harvard over 1 year ago

#18 - CohortAnalysis MWFRs

Pull Request - State: closed - Opened by drio18 almost 2 years ago

#16 - Just dcicutils version update

Pull Request - State: closed - Opened by dmichaels-harvard almost 2 years ago

#15 - Cost fix via Tibanna update

Pull Request - State: closed - Opened by drio18 almost 2 years ago

#14 - Generic MWFR creation

Pull Request - State: closed - Opened by drio18 almost 2 years ago

#13 - SampleProcessing Inputs + File Dimensionality

Pull Request - State: closed - Opened by drio18 about 2 years ago

#12 - Allow utils 6.0.0

Pull Request - State: closed - Opened by willronchetti about 2 years ago

#10 - VCF Input + CRAM Updates

Pull Request - State: closed - Opened by drio18 over 2 years ago

#9 - added action, updated version and dependencies

Pull Request - State: closed - Opened by B3rse over 2 years ago

#8 - Compute costs whenever MWFR status is checked

Pull Request - State: closed - Opened by alexander-veit over 2 years ago

#7 - MetaWorkflowRun Management Updates

Pull Request - State: closed - Opened by drio18 almost 3 years ago - 1 comment

#6 - added input_dimension

Pull Request - State: closed - Opened by B3rse almost 3 years ago

#4 - updating create_metawfr to allow for SV qc metadata

Pull Request - State: closed - Opened by phil-grayson over 3 years ago

#3 - Robust status

Pull Request - State: closed - Opened by SooLee over 3 years ago

#2 - added magma_ff stuff

Pull Request - State: closed - Opened by SooLee over 3 years ago

#1 - end_workflows as property

Pull Request - State: closed - Opened by SooLee over 3 years ago