dbbs-lab/bsb-hdf5 issues and pull requests

#39 - Write Lock issue with many MPI cores

Issue - State: open - Opened by drodarie 12 days ago - 1 comment
Labels: bug, help wanted

#38 - fix: add handles

Pull Request - State: closed - Opened by drodarie 14 days ago
Labels: fix

#37 - fix: BSB version dependencies

Pull Request - State: closed - Opened by drodarie about 1 month ago
Labels: fix

#36 - refactor!: mpi hdf5

Pull Request - State: closed - Opened by drodarie 2 months ago - 3 comments
Labels: refactor, breaking change

#35 - error when retriving size of MPI

Issue - State: closed - Opened by danilobenozzo 3 months ago - 1 comment

#34 - fix: forward mpi comm to lock system

Pull Request - State: closed - Opened by drodarie 4 months ago
Labels: fix

#33 - feat: implement auto-release GHA and conventional commits.

Pull Request - State: closed - Opened by drodarie 4 months ago
Labels: feat

#32 - Update to latest bsb

Issue - State: closed - Opened by Helveg 11 months ago

#31 - Add function to update morphology metadata.

Pull Request - State: closed - Opened by drodarie over 1 year ago

#30 - Change `_get_morphology_loaders` to preload required morphologies once

Pull Request - State: closed - Opened by drodarie over 1 year ago

#29 - Fix placement_set.py for entities.

Pull Request - State: closed - Opened by drodarie over 1 year ago - 1 comment

#28 - Fix/morpho loaders

Pull Request - State: closed - Opened by drodarie over 1 year ago - 1 comment

#27 - Fixed bug in get_global_chunks

Pull Request - State: closed - Opened by alessiomarta over 1 year ago

#26 - Improve scalability of metadata reading with large n morphologies

Pull Request - State: closed - Opened by Helveg over 1 year ago - 7 comments

#25 - Fix placement_set.py for entities.

Pull Request - State: closed - Opened by drodarie almost 2 years ago

#24 - Demux problem

Issue - State: closed - Opened by Helveg almost 2 years ago - 1 comment

#23 - Improved morphology meta using JSON for nested structures

Pull Request - State: closed - Opened by Helveg almost 2 years ago - 1 comment

#22 - Fixed error when using empty `pad_by` dataset

Pull Request - State: closed - Opened by Helveg almost 2 years ago - 1 comment

#21 - PlacementSet._track_add does not handle numpy.int64

Issue - State: closed - Opened by drodarie almost 2 years ago

#20 - Re-evaluate PlacementSet.append_data usages

Issue - State: closed - Opened by drodarie almost 2 years ago

#19 - Allow orientations of cells without morphologies. Fix dbbs-lab/bsb#678

Pull Request - State: closed - Opened by drodarie about 2 years ago - 1 comment

#18 - v0.6 - Simulation

Pull Request - State: closed - Opened by Helveg about 2 years ago - 1 comment

#17 - Fixed typo in connectivity_set.py

Pull Request - State: closed - Opened by alessiomarta about 2 years ago

#16 - Clear chunk size

Issue - State: closed - Opened by Helveg over 2 years ago

#15 - Fixed empty CS block read and added OOB check for write

Pull Request - State: closed - Opened by Helveg over 2 years ago - 1 comment

#14 - Raise `DatasetNotFoundError`s when loading morphologies or rotations that aren't there

Pull Request - State: closed - Opened by Helveg over 2 years ago - 1 comment

#13 - If ps is a `PlacementSet` of an `Entity`, len(ps) returns zero instead of the number of entities which have been created

Issue - State: open - Opened by alessiomarta over 2 years ago

#12 - 0.4 - CSet & Labels

Pull Request - State: closed - Opened by Helveg over 2 years ago

#11 - `cells` group still in HDF5

Issue - State: closed - Opened by Helveg over 2 years ago
Labels: good first issue

#10 - Reuse the `_Labels` encoding for labels

Issue - State: closed - Opened by Helveg over 2 years ago - 1 comment
Labels: nice-to-have

#9 - Make a decorator to handle handles

Issue - State: closed - Opened by Helveg over 2 years ago - 1 comment
Labels: nice-to-have

#8 - Rework `ChunkedProperty` and `ChunkedCollection`

Issue - State: open - Opened by Helveg over 2 years ago
Labels: nice-to-have

#7 - Added block sorted connection API

Pull Request - State: closed - Opened by Helveg over 2 years ago - 1 comment

#6 - Optimize len queries with cached attributes

Issue - State: open - Opened by Helveg over 2 years ago

#5 - Storage read-only mode

Issue - State: closed - Opened by Helveg over 2 years ago

#4 - Profile

Issue - State: open - Opened by Helveg over 2 years ago

#3 - Cooperate with bsb alpha 29

Pull Request - State: closed - Opened by Helveg over 2 years ago - 1 comment

#2 - Fix first branch empty on load

Pull Request - State: closed - Opened by Helveg over 2 years ago - 1 comment

#1 - Transactional under MPI

Pull Request - State: closed - Opened by Helveg over 2 years ago - 1 comment

GitHub / dbbs-lab/bsb-hdf5 issues and pull requests