daylily-informatics/daylily issues and pull requests

#61 - modify the strobealigner and sentieon workflows to delete their pre-mrkdup bams

Issue - State: open - Opened by iamh2o 14 days ago

#60 - 0.7.35 -- replace bwa-mem2

Pull Request - State: closed - Opened by iamh2o 15 days ago

#59 - Dyly s7 v0.7.33

Pull Request - State: closed - Opened by iamh2o 15 days ago - 1 comment

#57 - Re-work the s3 pubic reference s3 bucket naming

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#56 - Remove cached libs from snakemake and s3

Issue - State: open - Opened by iamh2o 27 days ago
Labels: refactor, v0.7

#55 - Write a sample sheet generator.

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#54 - Create Region Specific pcluster yaml config

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#53 - Explore user pays analysis workflow

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.8

#52 - Document Cloud Monitoring Dashboard

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#51 - Debug budgeting feature

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#50 - Plug in sentieon

Issue - State: open - Opened by iamh2o 27 days ago
Labels: new-feature, v0.7

#49 - Complete strobelighner analysis

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#49 - Complete strobelighner analysis

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#48 - Write up strobealigner analysis results

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#48 - Write up strobealigner analysis results

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#47 - Create v0.7 release

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#47 - Create v0.7 release

Issue - State: open - Opened by iamh2o 27 days ago
Labels: v0.7

#46 - Finalize the v0.7 release

Issue - State: open - Opened by iamh2o 27 days ago

#46 - Finalize the v0.7 release

Issue - State: open - Opened by iamh2o 27 days ago

#45 - Enable Running Cromwell and WDL

Issue - State: open - Opened by iamh2o 27 days ago
Labels: new-feature, v8

#45 - Enable Running Cromwell and WDL

Issue - State: open - Opened by iamh2o 27 days ago
Labels: new-feature, v8

#44 - Move to using snakemake v8 from v7

Issue - State: open - Opened by iamh2o 27 days ago
Labels: refactor, v8

#44 - Move to using snakemake v8 from v7

Issue - State: open - Opened by iamh2o 27 days ago
Labels: refactor, v8

#43 - Test mounting of sample data via rclone mount

Issue - State: open - Opened by iamh2o 27 days ago
Labels: new-feature

#43 - Test mounting of sample data via rclone mount

Issue - State: open - Opened by iamh2o 27 days ago
Labels: new-feature

#42 - Create daylily-VERSION AMIs

Issue - State: open - Opened by iamh2o 27 days ago
Labels: refactor

#42 - Create daylily-VERSION AMIs

Issue - State: open - Opened by iamh2o 27 days ago
Labels: refactor

#41 - Break repo into two parts

Issue - State: open - Opened by iamh2o 27 days ago
Labels: refactor

#41 - Break repo into two parts

Issue - State: open - Opened by iamh2o 27 days ago
Labels: refactor

#40 - Dyly s7 dev

Pull Request - State: closed - Opened by iamh2o about 1 month ago

#40 - Dyly s7 dev

Pull Request - State: closed - Opened by iamh2o about 1 month ago

#39 - Create Tools To Build Budgets & Pull Reports

Issue - State: open - Opened by iamh2o about 1 month ago
Labels: budgets, tagging

#39 - Create Tools To Build Budgets & Pull Reports

Issue - State: open - Opened by iamh2o about 1 month ago
Labels: budgets, tagging

#38 - update cloudstack formation to open slim_goodie ports

Issue - State: open - Opened by iamh2o about 2 months ago

#38 - update cloudstack formation to open slim_goodie ports

Issue - State: open - Opened by iamh2o about 2 months ago

#37 - automate checks for appropriate minimum quotas to run daylily w/192 vcpu

Issue - State: open - Opened by iamh2o about 2 months ago

#37 - automate checks for appropriate minimum quotas to run daylily w/192 vcpu

Issue - State: open - Opened by iamh2o about 2 months ago

#36 - Update quickinstall.md

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#36 - Update quickinstall.md

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#35 - record video of end-to-end setup and cluster deployment

Issue - State: open - Opened by iamh2o about 2 months ago

#35 - record video of end-to-end setup and cluster deployment

Issue - State: open - Opened by iamh2o about 2 months ago

#34 - remove ssh git clone as part of headnode config // bake head/compute node AMIs...

Issue - State: open - Opened by iamh2o about 2 months ago

#34 - remove ssh git clone as part of headnode config // bake head/compute node AMIs...

Issue - State: open - Opened by iamh2o about 2 months ago

#33 - RM edit

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#33 - RM edit

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#32 - X

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#32 - X

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#31 - Rcrf port 20240925

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#31 - Rcrf port 20240925

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#30 - upd copy

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#30 - upd copy

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#29 - closer to fin

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#29 - closer to fin

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#28 - Rcrf port 20240925

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#28 - Rcrf port 20240925

Pull Request - State: closed - Opened by iamh2o about 2 months ago

#27 - Update README.md

Pull Request - State: closed - Opened by iamh2o 3 months ago

#27 - Update README.md

Pull Request - State: closed - Opened by iamh2o 3 months ago

#26 - close branch

Pull Request - State: closed - Opened by iamh2o 3 months ago

#26 - close branch

Pull Request - State: closed - Opened by iamh2o 3 months ago

#25 - Update Install.md

Pull Request - State: closed - Opened by iamh2o 3 months ago

#25 - Update Install.md

Pull Request - State: closed - Opened by iamh2o 3 months ago

#24 - Update README.md

Pull Request - State: closed - Opened by iamh2o 3 months ago

#23 - add 0.6.0

Pull Request - State: closed - Opened by iamh2o 3 months ago

#23 - add 0.6.0

Pull Request - State: closed - Opened by iamh2o 3 months ago

#22 - Cluster creation with Ubuntu2204 working

Pull Request - State: closed - Opened by iamh2o 3 months ago

#22 - Cluster creation with Ubuntu2204 working

Pull Request - State: closed - Opened by iamh2o 3 months ago

#21 - Initial mods to move to ubuntu2204

Pull Request - State: closed - Opened by iamh2o 3 months ago

#21 - Initial mods to move to ubuntu2204

Pull Request - State: closed - Opened by iamh2o 3 months ago

#20 - Install Script Improvements

Issue - State: open - Opened by iamh2o 3 months ago

#20 - Install Script Improvements

Issue - State: open - Opened by iamh2o 3 months ago

#19 - Update README.md

Pull Request - State: closed - Opened by iamh2o 3 months ago

#18 - References Bucket Missing

Issue - State: open - Opened by iamh2o 8 months ago