Ecosyste.ms: Issues

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GitHub / dawe/schist issues and pull requests

#64 - AttributeError: module 'schist' has no attribute 'inference'

Issue - State: closed - Opened by ngvananh2508 over 1 year ago - 3 comments

#63 - Merge from devel

Pull Request - State: closed - Opened by dawe almost 2 years ago

#62 - KeyError

Issue - State: open - Opened by imerelli almost 2 years ago - 1 comment

#61 - Fix draw_tree

Issue - State: open - Opened by dawe about 2 years ago

#60 - Label transfer crashes when too many cells are there

Issue - State: closed - Opened by dawe over 2 years ago - 3 comments

#59 - scs.tl.label_transfer error

Issue - State: closed - Opened by vgiansanti about 3 years ago - 2 comments

#58 - Remove `unknown` if `use_best` in label transfer

Issue - State: closed - Opened by dawe about 3 years ago - 1 comment

#57 - Deprecate functions

Issue - State: open - Opened by dawe about 3 years ago

#56 - Broken docs

Issue - State: closed - Opened by dawe about 3 years ago
Labels: documentation

#55 - draw_tree error, adata.uns['schist']['state'] is not assigned

Issue - State: closed - Opened by neurOnur about 3 years ago - 3 comments
Labels: bug

#54 - label transfer tutorial

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#53 - clustering tutorial finished

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#52 - added images and nested model to clustering tutorial

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#51 - first part of tutorial section

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#50 - first try with tutorial section

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#49 - Update functions.rst

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#48 - super idea

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#47 - new try old method scanpy sucks >:(

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#46 - first try with scnapy as template6

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#45 - first try with scnapy as template5

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#44 - first try with scnapy as template4

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#43 - first try with scnapy as template3

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#42 - first try with scnapy as template

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#41 - first try with scnapy as template

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#40 - readme.rst file in docs/source, pointing at original readme.rst

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#39 - added excluded extensions in docs/conf.py

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#38 - fixed some bugs in docs/conf.py

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#37 - changed files in generated folders

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#36 - include readme.rst in index.rst

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#35 - changed path of readme.rst

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#34 - readme file as the first file in docs

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#33 - readme file in docs

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#32 - last chance

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#31 - only graphtool in surce/conf.py

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#30 - requirements path changed in readthedocs.yaml file

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#29 - changed .readthedocs.yaml

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#28 - added graph-tool to mock import

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#27 - I cannot believe autodoc works only locally 5

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#25 - I cannot believe autodoc works only locally 3

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#24 - I cannot believe autodoc works only locally 2

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#23 - I cannot believe autodoc works only locally

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#22 - fixed the readthedocs.yaml file, indicating requirements.txr

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#21 - added the readthedocs.yaml file

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#20 - firs try, new doc

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#19 - docs adj

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#18 - Update index.rst

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#17 - myst parser deleted from config.py

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#16 - docs correction

Pull Request - State: closed - Opened by leomorelli over 3 years ago

#15 - Performance degradation after updating graph-tool

Issue - State: closed - Opened by dawe over 3 years ago - 1 comment

#14 - Documentation generated with sphinx

Pull Request - State: closed - Opened by leomorelli almost 4 years ago

#13 - Do the docs

Issue - State: closed - Opened by dawe almost 4 years ago
Labels: documentation

#12 - Remove `state` from unstructured data and `IO` functions

Issue - State: closed - Opened by dawe almost 4 years ago - 2 comments
Labels: enhancement

#11 - draw_tree is broken

Issue - State: closed - Opened by dawe almost 4 years ago - 3 comments
Labels: bug

#10 - Add parallel processing options

Issue - State: closed - Opened by dawe almost 4 years ago - 2 comments
Labels: enhancement

#9 - Font size in plotting functions

Issue - State: closed - Opened by leomorelli about 4 years ago - 1 comment
Labels: enhancement

#8 - Fix graph-tool install command

Pull Request - State: closed - Opened by stuarteberg over 4 years ago

#7 - Alternative approach based on greedy merge-split MCMC

Issue - State: closed - Opened by count0 over 4 years ago - 3 comments

#6 - Improved graph-tool installation instructions

Issue - State: closed - Opened by count0 over 4 years ago - 2 comments

#5 - graph-tool patch no longer needed

Issue - State: closed - Opened by count0 over 4 years ago - 2 comments

#4 - No I/O for ppbm

Issue - State: closed - Opened by dawe over 4 years ago

#3 - Error with nested_model() options

Issue - State: closed - Opened by vgiansanti over 4 years ago - 5 comments

#2 - RuntimeError when using schist.tl.select_affinity() a level is specified

Issue - State: closed - Opened by leomorelli over 4 years ago - 1 comment

#1 - Change name to schist

Pull Request - State: closed - Opened by dawe over 4 years ago