Ecosyste.ms: Issues

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GitHub / davidlougheed/strkit issues and pull requests

#9 - feat: basic VCF output + allele consensus calculation

Pull Request - State: closed - Opened by davidlougheed 8 months ago

#8 - Show k-mer histogram in visualize

Issue - State: closed - Opened by davidlougheed almost 2 years ago

#7 - take advantage of nearby SNPs to assign reads to peaks if hard to separate

Issue - State: closed - Opened by davidlougheed almost 2 years ago

#6 - optional k-mer computation

Issue - State: closed - Opened by davidlougheed almost 2 years ago

#5 - allow seeding all RNG for replicability

Issue - State: closed - Opened by davidlougheed almost 2 years ago - 1 comment

#4 - generate partial-copy candidate repeats for more accurate peak calling?

Issue - State: closed - Opened by davidlougheed almost 2 years ago

#3 - t-test for MI module to test difference parent->child using read level counts

Issue - State: closed - Opened by davidlougheed almost 2 years ago

#2 - Switch to generating CIs from final model rather than from all model estimates

Issue - State: closed - Opened by davidlougheed almost 2 years ago

#1 - Write command to do population-wide callign and report generation

Issue - State: open - Opened by davidlougheed almost 2 years ago