Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / dattalab/keypoint-moseq issues and pull requests

#179 - View keypoint video + ethogram/syllables interactively?

Issue - State: open - Opened by tuanpham96 17 days ago - 1 comment

#177 - Kernel crashing for large datasets initialization

Issue - State: open - Opened by JSignoretGenest about 1 month ago - 2 comments

#176 - New data fit the old model brought more syllables.

Issue - State: open - Opened by seesaw1992 about 1 month ago - 3 comments

#175 - pass video_extension in calibration

Pull Request - State: closed - Opened by calebweinreb about 1 month ago

#173 - No matching video found when generating grid movie

Issue - State: open - Opened by Chap5732 about 2 months ago - 9 comments

#172 - refactored downsampling and added trimming options

Pull Request - State: closed - Opened by calebweinreb about 2 months ago

#171 - Determining window size for grid videos

Issue - State: open - Opened by ylvabremer about 2 months ago - 3 comments

#170 - Importing CSV keypoint data from SLEAP

Issue - State: open - Opened by smasri09 about 2 months ago - 11 comments

#169 - Trim tracking data while loading

Issue - State: open - Opened by LeonardoLupori 2 months ago - 6 comments

#168 - reshaping problem in Gibbs sampler for n_lag=1

Issue - State: closed - Opened by heikestein 2 months ago - 1 comment

#166 - the input of the model in parsing behavior of multi-animal interactions

Issue - State: closed - Opened by wefvdge 2 months ago - 2 comments

#165 - Description of statistical methods

Issue - State: open - Opened by tianheng833 3 months ago

#164 - Error with Calibration step

Issue - State: closed - Opened by danielpollak 3 months ago - 2 comments

#163 - correct processing of axis order from sleap_io.Labels.numpy()

Pull Request - State: closed - Opened by calebweinreb 3 months ago

#162 - try except in keypoint loader reraises exception

Pull Request - State: closed - Opened by calebweinreb 3 months ago

#161 - NVCC version issue

Issue - State: open - Opened by simonlsp 3 months ago - 1 comment

#160 - Help Needed: Data Loader for 3D Posture Data from DANNCE

Issue - State: closed - Opened by v738301 3 months ago - 6 comments

#159 - Question: what if not all behaviors are present in all videos?

Issue - State: closed - Opened by SusanL82 3 months ago - 1 comment

#157 - Getting a "UnboundLocalError" when trying to load data.

Issue - State: closed - Opened by Zaher503 4 months ago - 3 comments

#156 - Zebra finch optimal kappa value

Issue - State: closed - Opened by birdguy3227 4 months ago - 4 comments

#155 - HPC issues "Could not load dynamic library libcudart"

Issue - State: closed - Opened by KarinHellevik 4 months ago - 7 comments

#154 - Using keypoint-moseq for keypoint post processing

Issue - State: closed - Opened by adrianloy 5 months ago - 1 comment

#153 - downsampling causes errors in calibration

Issue - State: open - Opened by mshallow 6 months ago - 45 comments

#152 - calibration widget error

Issue - State: open - Opened by vvostrikov10 6 months ago - 5 comments

#151 - stats_df in statistical analysis

Issue - State: closed - Opened by cgeorgelou 6 months ago - 4 comments

#150 - Problems importing Keypoint-MoSeq on Jupyter Notebook

Issue - State: closed - Opened by JorgeVindelAlfageme 7 months ago - 7 comments

#149 - Slicing grid movies

Issue - State: closed - Opened by au183 7 months ago - 14 comments

#148 - Applying to videos from different setups

Issue - State: closed - Opened by giacomovec 7 months ago - 3 comments

#147 - issue importing keypoint data from a separate folder.

Issue - State: closed - Opened by quemelabune 7 months ago - 2 comments

#146 - Better error catching + change default iters for apply_model

Pull Request - State: closed - Opened by calebweinreb 7 months ago

#145 - merge dev into main

Pull Request - State: closed - Opened by versey-sherry 7 months ago

#144 - Analysis fix

Pull Request - State: closed - Opened by versey-sherry 7 months ago

#143 - Apply_model does not yield same outputs as the trained model

Issue - State: closed - Opened by gourie 8 months ago - 1 comment

#142 - Interactive widgets not loading

Issue - State: open - Opened by mshallow 8 months ago - 12 comments

#141 - Problem with launching jupyter notebook in anaconda prompt or navigator

Issue - State: closed - Opened by eva10j 8 months ago - 2 comments

#140 - plotting functions to compare between groups error at several steps

Issue - State: closed - Opened by mshallow 9 months ago - 18 comments

#139 - Problems with Initializing Model

Issue - State: closed - Opened by afbrokaw 9 months ago - 3 comments

#138 - Sleap io requires python 3.9 but KPMS requires 3.8

Issue - State: closed - Opened by jonahpearl 9 months ago - 1 comment

#136 - Ideal sampling rate for training data

Issue - State: closed - Opened by mshallow 9 months ago - 5 comments

#135 - Freipose loader

Pull Request - State: closed - Opened by calebweinreb 9 months ago

#134 - Inconsistent Conda GPU environment

Issue - State: closed - Opened by rjd55 9 months ago - 1 comment

#133 - `update_config` not working from a DLC config file

Issue - State: closed - Opened by rjd55 9 months ago - 1 comment

#132 - etils TypeError

Issue - State: closed - Opened by rjd55 9 months ago - 1 comment

#131 - Grid Movies & Syllable Dendrogram After Applying a Network to New Data

Issue - State: closed - Opened by mbcooper97 10 months ago - 6 comments

#130 - Error trying to use a trained model on new data

Issue - State: closed - Opened by mbcooper97 10 months ago - 4 comments

#129 - Linux GPU install error

Issue - State: closed - Opened by bainro 10 months ago - 4 comments

#128 - ValueError in loading keypoints from maDeepLabCut dataset

Issue - State: closed - Opened by mshallow 10 months ago - 14 comments

#126 - TypeError: 'NoneType' object is not subscriptable

Issue - State: closed - Opened by kjmartin44 10 months ago - 1 comment

#125 - Installation on Linux x86_64 with NVIDIA GPU

Issue - State: closed - Opened by dsanmiguel 10 months ago

#124 - Question on performance the test dataset

Issue - State: open - Opened by vigji 10 months ago

#123 - enforce z order with bokeh hook

Pull Request - State: closed - Opened by calebweinreb 10 months ago

#122 - calibration stalls, or only shows keypoints in first frame

Issue - State: closed - Opened by csoneson 11 months ago - 15 comments

#121 - 'TypeError: unsupported operand type(s)' when importing kpms in Jupyter

Issue - State: closed - Opened by MiceOnDrugs 11 months ago - 4 comments

#120 - Bugfixes (linestyle and extract results)

Pull Request - State: closed - Opened by calebweinreb 11 months ago

#119 - UnboundLocalError when plotting transition matrices

Issue - State: closed - Opened by mjin1812 11 months ago - 7 comments

#118 - Dev

Pull Request - State: closed - Opened by calebweinreb 12 months ago

#117 - Location aware

Pull Request - State: closed - Opened by calebweinreb 12 months ago

#116 - add build_node_hierarchy from keypoint_sort

Pull Request - State: closed - Opened by jonahpearl 12 months ago

#114 - fix: change moseq_df function to work with 3d keypoints

Pull Request - State: closed - Opened by versey-sherry about 1 year ago

#113 - Update install.rst

Pull Request - State: closed - Opened by wingillis about 1 year ago

#112 - Trajectory Plots not Displaying Properly

Issue - State: closed - Opened by Bojun-Feng about 1 year ago - 5 comments

#111 - Multi-GPU not supported for Windows

Issue - State: open - Opened by KonradDanielewski about 1 year ago - 2 comments

#110 - Fix installation for GPU on Windows

Pull Request - State: closed - Opened by KonradDanielewski about 1 year ago - 12 comments

#109 - Loading my own keypoint tracking data

Issue - State: closed - Opened by liwei4932 about 1 year ago - 8 comments

#107 - cuSolver internal error

Issue - State: closed - Opened by lihao881230 about 1 year ago - 5 comments

#106 - Return sampled instances in generate_grid_movies

Pull Request - State: closed - Opened by NeuTTH about 1 year ago

#105 - Data loader

Issue - State: closed - Opened by Aexolowski about 1 year ago - 3 comments

#104 - KeyError at the 'Generate Dataframes' step

Issue - State: closed - Opened by ryanschwark about 1 year ago - 1 comment

#103 - cuSolver internal error

Issue - State: closed - Opened by wula2048 about 1 year ago - 7 comments

#102 - importing tracking data from the Livemousetracker in Moseq ?

Issue - State: closed - Opened by dhuzard about 1 year ago - 3 comments

#101 - Error message during model initiation

Issue - State: closed - Opened by Aexolowski about 1 year ago - 5 comments

#100 - Non interact analysis + fixing syll usage ordering

Pull Request - State: closed - Opened by versey-sherry about 1 year ago

#99 - GPU not being utilized during model training

Issue - State: closed - Opened by ryanschwark about 1 year ago - 2 comments

#98 - KeyError when generating dataframes for newly added data

Issue - State: closed - Opened by ryanschwark about 1 year ago - 2 comments

#97 - NameError: name 'model_name' is not defined

Issue - State: closed - Opened by ryanschwark about 1 year ago - 2 comments

#96 - NameError: name 'name' is not defined

Issue - State: closed - Opened by ryanschwark about 1 year ago - 2 comments

#95 - ValueError: not enough values to unpack (expected 3, got 2)

Issue - State: closed - Opened by ryanschwark about 1 year ago - 1 comment

#94 - installing jupyter nbextensions

Issue - State: closed - Opened by ligeralde about 1 year ago - 2 comments

#93 - Conflicts when installing numpy 1.24

Issue - State: closed - Opened by marytast about 1 year ago - 1 comment

#92 - Error when loading multianimal DLC data

Issue - State: closed - Opened by alisabak about 1 year ago - 2 comments

#91 - 3 dplotting refactor

Pull Request - State: closed - Opened by calebweinreb about 1 year ago

#90 - codespell: config, workflow + typos fixed

Pull Request - State: closed - Opened by yarikoptic about 1 year ago - 3 comments

#89 - chore: Update LICENSE.md

Pull Request - State: closed - Opened by versey-sherry about 1 year ago

#88 - Import error: Numba needs Numpy 1.24 or less

Issue - State: closed - Opened by JohannaMankel over 1 year ago - 2 comments

#87 - CUDA Illegal Memory Access Issue

Issue - State: closed - Opened by sean-afshar over 1 year ago - 1 comment

#86 - bugfixes in continue fitting code example

Pull Request - State: closed - Opened by calebweinreb over 1 year ago

#85 - bugfixes

Pull Request - State: closed - Opened by calebweinreb over 1 year ago

#83 - Issue downloading the jupyter extensions in python.

Issue - State: closed - Opened by rdemann over 1 year ago - 5 comments

#82 - Error installing jupyter notebook extensions

Issue - State: closed - Opened by ryanschwark over 1 year ago - 10 comments

#81 - Estimated bodyparts missing from kpms 2.0

Issue - State: closed - Opened by ellaksay over 1 year ago - 2 comments

#80 - Updating to keypoint_moseq 2.0

Issue - State: closed - Opened by ellaksay over 1 year ago - 4 comments