Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / datirium/workflows issues and pull requests

#215 - SDAP-1245 heatmap new base image for vst zscore

Pull Request - State: closed - Opened by robert-player 23 days ago

#214 - Check webhook

Pull Request - State: closed - Opened by galio12 about 1 month ago

#213 - SDAP-1249 filter diffbind peaks

Pull Request - State: closed - Opened by robert-player about 2 months ago

#212 - sc tools docker image version update v0.0.39 -> v0.0.41

Pull Request - State: open - Opened by michael-kotliar 2 months ago

#211 - Update DiffBind to not fail when generating bigBed tracks

Pull Request - State: closed - Opened by michael-kotliar 2 months ago

#209 - DESeq2 updated to v.28

Pull Request - State: closed - Opened by NDeeSeee 2 months ago

#208 - Single-Cell Workflows Update

Pull Request - State: closed - Opened by michael-kotliar 3 months ago

#207 - SDAP-1159 minor script parameter typo fix

Pull Request - State: closed - Opened by robert-player 3 months ago

#206 - SDAP-1243 genelist heatmap for rna-seq data only

Pull Request - State: closed - Opened by robert-player 4 months ago

#205 - SDAP-1211 added binsize param

Pull Request - State: closed - Opened by robert-player 4 months ago

#204 - SDAP-1211 added subcommand options

Pull Request - State: closed - Opened by robert-player 5 months ago

#203 - SDAP-1123 sigfig fix from 3 to 9 digits for scaling factor

Pull Request - State: closed - Opened by robert-player 5 months ago

#202 - SDAP-1229 diffbind spikein norm workflow etc

Pull Request - State: closed - Opened by robert-player 5 months ago

#201 - SDAP-1236 fastq download filename fix

Pull Request - State: closed - Opened by robert-player 6 months ago

#200 - SDAP-1211 deeptools heatmap

Pull Request - State: closed - Opened by robert-player 6 months ago

#199 - Add Single-Cell ATAC-Seq Filtering Analysis pipeline

Pull Request - State: closed - Opened by michael-kotliar 6 months ago

#198 - SDAP-1227 cutandrun updates and chipseq spikein workflow

Pull Request - State: closed - Opened by robert-player 6 months ago

#197 - SDAP-1211 tag density heatmap updates

Pull Request - State: closed - Opened by robert-player 7 months ago

#196 - SDAP-1211 tag denisty heatmap updates

Pull Request - State: closed - Opened by robert-player 7 months ago

#194 - Update sc tools to use v0.0.34 docker image

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#193 - All changes

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#192 - Pr 1 4 merged

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#191 - Pr 5 problematic updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#190 - Pr 4 sc tools updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#189 - Pr 3 cellranger updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#188 - Pr 2 delete old sc workflows

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#187 - Pr 1 not sc updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#186 - Pr 1 not sc updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#184 - Pr 1 not sc updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#182 - Pr 4 sc tools updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#181 - Pr 3 cellranger updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#180 - Pr 2 delete old sc workflows

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#179 - Pr 1 not sc updates

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#178 - Revert "Single-Cell Workflows PR Fix"

Pull Request - State: closed - Opened by scrowley-Datirium 7 months ago

#177 - Single-Cell Workflows PR Fix

Pull Request - State: closed - Opened by michael-kotliar 7 months ago

#176 - Revert 138

Pull Request - State: closed - Opened by scrowley-Datirium 7 months ago

#175 - Check webhook

Pull Request - State: closed - Opened by galio12 7 months ago

#174 - check pr

Pull Request - State: closed - Opened by galio12 8 months ago

#173 - Second attempt to merge all single-cell workflows

Pull Request - State: closed - Opened by michael-kotliar 8 months ago - 1 comment

#172 - SDAP-1217 kallisto update with group isoforms

Pull Request - State: closed - Opened by robert-player 8 months ago

#171 - SDAP-1217 added kallisto to deseq multi factor wf

Pull Request - State: closed - Opened by robert-player 8 months ago

#170 - SDAP-1216 filter peaks PR redo

Pull Request - State: closed - Opened by robert-player 9 months ago

#169 - SDAP-1217 kallisto deseq mf merge

Pull Request - State: closed - Opened by robert-player 9 months ago - 1 comment

#168 - SDAP-1216 filter peaks update

Pull Request - State: closed - Opened by robert-player 9 months ago - 1 comment

#167 - SDAP-1212 updates to ercc and gseapy

Pull Request - State: closed - Opened by robert-player 9 months ago

#166 - SDAP-1207 homer upstream input updates

Pull Request - State: closed - Opened by robert-player 9 months ago

#165 - Remove multiple format fields from the inputs

Pull Request - State: closed - Opened by michael-kotliar 9 months ago

#164 - SDAP-1197-1199 ercc spikein norm and de workflows

Pull Request - State: closed - Opened by robert-player 9 months ago

#163 - Sdap 1195 heatmap clustering

Pull Request - State: closed - Opened by robert-player 11 months ago

#162 - SDAP-1186 diffbind file name fix

Pull Request - State: closed - Opened by robert-player 11 months ago

#161 - SDAP-1186 diffbind update for setops

Pull Request - State: closed - Opened by robert-player 11 months ago

#160 - Sdap 1196 kallisto updates

Pull Request - State: closed - Opened by robert-player 11 months ago

#158 - SDAP-1186 setops for peak overlaps

Pull Request - State: closed - Opened by robert-player 11 months ago

#157 - SDAP-1192 genelist heatmap updates

Pull Request - State: closed - Opened by robert-player 11 months ago

#156 - Sdap 1167 setops

Pull Request - State: closed - Opened by robert-player 12 months ago

#155 - SDAP-1178 kallisto transcript quant workflow

Pull Request - State: closed - Opened by robert-player 12 months ago

#154 - ATAC and ChIP workflows update

Pull Request - State: closed - Opened by michael-kotliar about 1 year ago

#153 - Sdap 1161 qiime aggregate trim trunc input fix

Pull Request - State: closed - Opened by robert-player about 1 year ago

#152 - SDAP-1161 qiime aggregate inputs

Pull Request - State: closed - Opened by robert-player about 1 year ago

#150 - SDAP-1161 qiime aggregate workflow

Pull Request - State: closed - Opened by robert-player about 1 year ago

#149 - Sdap 1161 qiime aggregate

Pull Request - State: closed - Opened by robert-player about 1 year ago

#148 - SDAP-1176 added cutandrun macs2 and seacr to ma norm

Pull Request - State: closed - Opened by robert-player about 1 year ago

#147 - SDAP-1170 deseq changes to work with quantseq outputs

Pull Request - State: closed - Opened by robert-player about 1 year ago

#146 - SDAP-1170 quantseq bambai pair fix and genelist updates

Pull Request - State: closed - Opened by robert-player about 1 year ago

#145 - Volcano plot update

Pull Request - State: closed - Opened by michael-kotliar about 1 year ago

#144 - SDAP-1159 qiime2

Pull Request - State: closed - Opened by robert-player about 1 year ago

#143 - SDAP-1045 gene details output and combined snps and indels

Pull Request - State: closed - Opened by robert-player about 1 year ago

#142 - SDAP-1045 vcf extensions

Pull Request - State: closed - Opened by robert-player about 1 year ago

#141 - SDAP-1107 genelists update

Pull Request - State: closed - Opened by robert-player over 1 year ago

#140 - SDAP-1107 genelists heatmap

Pull Request - State: closed - Opened by robert-player over 1 year ago

#138 - To collect all minor changes that will be included in publication

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago - 1 comment

#136 - SDAP-1123-third scaled bigwig fix

Pull Request - State: closed - Opened by robert-player over 1 year ago

#134 - SDAP-1123-second removed relaxed peaks from IGV

Pull Request - State: closed - Opened by robert-player over 1 year ago

#133 - SDAP-1123 cutandrun seacr bed file updates

Pull Request - State: closed - Opened by robert-player over 1 year ago

#132 - Make Fastq Download workflow support multiple SRR identifiers

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago

#131 - Make DESeq Multi-Factor run LRT test by default

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago

#129 - Add samples order explanation to DiffBind Multi-Factor Analysis

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago

#128 - SDAP-849 preseq sam clean fix

Pull Request - State: closed - Opened by robert-player over 1 year ago

#127 - SDAP-1070 temp changes

Pull Request - State: closed - Opened by robert-player over 1 year ago

#126 - Sdap 1070 - mirna workflow updates

Pull Request - State: closed - Opened by robert-player over 1 year ago

#125 - Sdap 1095 deseq count table fix for gsea

Pull Request - State: closed - Opened by robert-player over 1 year ago

#124 - Meaningless changes

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago

#123 - Sdap 1070 miRNA workflow

Pull Request - State: closed - Opened by robert-player over 1 year ago

#122 - Updated set of single-cell workflows

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago

#121 - Add DiffBind Multi-factor Analysis workflow

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago

#120 - SDAP-1045 germline variant calling workflow

Pull Request - State: closed - Opened by robert-player over 1 year ago

#119 - Make DiffBind to produce files with unique names

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago

#118 - SDAP-1058 cutandrun workflow bifurcation

Pull Request - State: closed - Opened by robert-player over 1 year ago

#117 - Bump werkzeug from 1.0.1 to 2.2.3 in /dockerfiles/requirements

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#116 - Bump http-cache-semantics from 4.1.0 to 4.1.1 in /tests

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, javascript

#115 - MA-plot

Pull Request - State: closed - Opened by michael-kotliar over 1 year ago

#114 - SDAP-1040 fix IGV sample comparison

Pull Request - State: closed - Opened by robert-player over 1 year ago