Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / datirium/workflows issues and pull requests
#215 - SDAP-1245 heatmap new base image for vst zscore
Pull Request -
State: closed - Opened by robert-player 23 days ago
#214 - Check webhook
Pull Request -
State: closed - Opened by galio12 about 1 month ago
#213 - SDAP-1249 filter diffbind peaks
Pull Request -
State: closed - Opened by robert-player about 2 months ago
#212 - sc tools docker image version update v0.0.39 -> v0.0.41
Pull Request -
State: open - Opened by michael-kotliar 2 months ago
#211 - Update DiffBind to not fail when generating bigBed tracks
Pull Request -
State: closed - Opened by michael-kotliar 2 months ago
#210 - valeriis deseq update for db changes and minor cutandrun manorm2 updates
Pull Request -
State: closed - Opened by robert-player 2 months ago
#209 - DESeq2 updated to v.28
Pull Request -
State: closed - Opened by NDeeSeee 2 months ago
#208 - Single-Cell Workflows Update
Pull Request -
State: closed - Opened by michael-kotliar 3 months ago
#207 - SDAP-1159 minor script parameter typo fix
Pull Request -
State: closed - Opened by robert-player 3 months ago
#206 - SDAP-1243 genelist heatmap for rna-seq data only
Pull Request -
State: closed - Opened by robert-player 4 months ago
#205 - SDAP-1211 added binsize param
Pull Request -
State: closed - Opened by robert-player 4 months ago
#204 - SDAP-1211 added subcommand options
Pull Request -
State: closed - Opened by robert-player 5 months ago
#203 - SDAP-1123 sigfig fix from 3 to 9 digits for scaling factor
Pull Request -
State: closed - Opened by robert-player 5 months ago
#202 - SDAP-1229 diffbind spikein norm workflow etc
Pull Request -
State: closed - Opened by robert-player 5 months ago
#201 - SDAP-1236 fastq download filename fix
Pull Request -
State: closed - Opened by robert-player 6 months ago
#200 - SDAP-1211 deeptools heatmap
Pull Request -
State: closed - Opened by robert-player 6 months ago
#199 - Add Single-Cell ATAC-Seq Filtering Analysis pipeline
Pull Request -
State: closed - Opened by michael-kotliar 6 months ago
#198 - SDAP-1227 cutandrun updates and chipseq spikein workflow
Pull Request -
State: closed - Opened by robert-player 6 months ago
#197 - SDAP-1211 tag density heatmap updates
Pull Request -
State: closed - Opened by robert-player 7 months ago
#196 - SDAP-1211 tag denisty heatmap updates
Pull Request -
State: closed - Opened by robert-player 7 months ago
#195 - SDAP-1226 unaligned reads fix for rna-seq workflows and ercc updates
Pull Request -
State: closed - Opened by robert-player 7 months ago
#194 - Update sc tools to use v0.0.34 docker image
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#193 - All changes
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#192 - Pr 1 4 merged
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#191 - Pr 5 problematic updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#190 - Pr 4 sc tools updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#189 - Pr 3 cellranger updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#188 - Pr 2 delete old sc workflows
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#187 - Pr 1 not sc updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#186 - Pr 1 not sc updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#184 - Pr 1 not sc updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#182 - Pr 4 sc tools updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#181 - Pr 3 cellranger updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#180 - Pr 2 delete old sc workflows
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#179 - Pr 1 not sc updates
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#178 - Revert "Single-Cell Workflows PR Fix"
Pull Request -
State: closed - Opened by scrowley-Datirium 7 months ago
#177 - Single-Cell Workflows PR Fix
Pull Request -
State: closed - Opened by michael-kotliar 7 months ago
#176 - Revert 138
Pull Request -
State: closed - Opened by scrowley-Datirium 7 months ago
#175 - Check webhook
Pull Request -
State: closed - Opened by galio12 7 months ago
#174 - check pr
Pull Request -
State: closed - Opened by galio12 8 months ago
#173 - Second attempt to merge all single-cell workflows
Pull Request -
State: closed - Opened by michael-kotliar 8 months ago
- 1 comment
#172 - SDAP-1217 kallisto update with group isoforms
Pull Request -
State: closed - Opened by robert-player 8 months ago
#171 - SDAP-1217 added kallisto to deseq multi factor wf
Pull Request -
State: closed - Opened by robert-player 8 months ago
#170 - SDAP-1216 filter peaks PR redo
Pull Request -
State: closed - Opened by robert-player 9 months ago
#169 - SDAP-1217 kallisto deseq mf merge
Pull Request -
State: closed - Opened by robert-player 9 months ago
- 1 comment
#168 - SDAP-1216 filter peaks update
Pull Request -
State: closed - Opened by robert-player 9 months ago
- 1 comment
#167 - SDAP-1212 updates to ercc and gseapy
Pull Request -
State: closed - Opened by robert-player 9 months ago
#166 - SDAP-1207 homer upstream input updates
Pull Request -
State: closed - Opened by robert-player 9 months ago
#165 - Remove multiple format fields from the inputs
Pull Request -
State: closed - Opened by michael-kotliar 9 months ago
#164 - SDAP-1197-1199 ercc spikein norm and de workflows
Pull Request -
State: closed - Opened by robert-player 9 months ago
#163 - Sdap 1195 heatmap clustering
Pull Request -
State: closed - Opened by robert-player 11 months ago
#162 - SDAP-1186 diffbind file name fix
Pull Request -
State: closed - Opened by robert-player 11 months ago
#161 - SDAP-1186 diffbind update for setops
Pull Request -
State: closed - Opened by robert-player 11 months ago
#160 - Sdap 1196 kallisto updates
Pull Request -
State: closed - Opened by robert-player 11 months ago
#159 - SDAP-1194 updated dockerfile base and made some inputs optional
Pull Request -
State: closed - Opened by robert-player 11 months ago
#158 - SDAP-1186 setops for peak overlaps
Pull Request -
State: closed - Opened by robert-player 11 months ago
#157 - SDAP-1192 genelist heatmap updates
Pull Request -
State: closed - Opened by robert-player 11 months ago
#156 - Sdap 1167 setops
Pull Request -
State: closed - Opened by robert-player 12 months ago
#155 - SDAP-1178 kallisto transcript quant workflow
Pull Request -
State: closed - Opened by robert-player 12 months ago
#154 - ATAC and ChIP workflows update
Pull Request -
State: closed - Opened by michael-kotliar about 1 year ago
#153 - Sdap 1161 qiime aggregate trim trunc input fix
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#152 - SDAP-1161 qiime aggregate inputs
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#151 - Update DESeq2 workflow to use Combat-Seq for batch effect removal
Pull Request -
State: closed - Opened by michael-kotliar about 1 year ago
#150 - SDAP-1161 qiime aggregate workflow
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#149 - Sdap 1161 qiime aggregate
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#148 - SDAP-1176 added cutandrun macs2 and seacr to ma norm
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#147 - SDAP-1170 deseq changes to work with quantseq outputs
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#146 - SDAP-1170 quantseq bambai pair fix and genelist updates
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#145 - Volcano plot update
Pull Request -
State: closed - Opened by michael-kotliar about 1 year ago
#144 - SDAP-1159 qiime2
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#143 - SDAP-1045 gene details output and combined snps and indels
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#142 - SDAP-1045 vcf extensions
Pull Request -
State: closed - Opened by robert-player about 1 year ago
#141 - SDAP-1107 genelists update
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#140 - SDAP-1107 genelists heatmap
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#139 - Make DESeq Multi Factor Analysis not fail with non-unique RefseqIDs when grouping by transcripts
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#138 - To collect all minor changes that will be included in publication
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
- 1 comment
#137 - Update Single-Cell workflows to the latest versions. Mark deprecated pipelines
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#136 - SDAP-1123-third scaled bigwig fix
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#135 - Update Fastq Download Workflow with Cell Ranger BamToFastq support
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#134 - SDAP-1123-second removed relaxed peaks from IGV
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#133 - SDAP-1123 cutandrun seacr bed file updates
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#132 - Make Fastq Download workflow support multiple SRR identifiers
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#131 - Make DESeq Multi-Factor run LRT test by default
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#130 - Copied deeptools heatmap and diffbind filter workflows from the custom to this repo
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#129 - Add samples order explanation to DiffBind Multi-Factor Analysis
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#128 - SDAP-849 preseq sam clean fix
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#127 - SDAP-1070 temp changes
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#126 - Sdap 1070 - mirna workflow updates
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#125 - Sdap 1095 deseq count table fix for gsea
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#124 - Meaningless changes
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#123 - Sdap 1070 miRNA workflow
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#122 - Updated set of single-cell workflows
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#121 - Add DiffBind Multi-factor Analysis workflow
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#120 - SDAP-1045 germline variant calling workflow
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#119 - Make DiffBind to produce files with unique names
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#118 - SDAP-1058 cutandrun workflow bifurcation
Pull Request -
State: closed - Opened by robert-player over 1 year ago
#117 - Bump werkzeug from 1.0.1 to 2.2.3 in /dockerfiles/requirements
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python
#116 - Bump http-cache-semantics from 4.1.0 to 4.1.1 in /tests
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, javascript
#115 - MA-plot
Pull Request -
State: closed - Opened by michael-kotliar over 1 year ago
#114 - SDAP-1040 fix IGV sample comparison
Pull Request -
State: closed - Opened by robert-player over 1 year ago