datalad/datalad-container issues and pull requests

#268 - MNT: Account for a number of deprecations in core

Pull Request - State: closed - Opened by adswa 15 days ago - 2 comments
Labels: patch

#267 - 3 tests started to fail due to expired shub https certificate!

Issue - State: closed - Opened by yarikoptic about 1 month ago - 1 comment

#266 - Support having multiple versions of containers, and specification of version upon execution

Issue - State: open - Opened by yarikoptic 5 months ago
Labels: enhancement

#265 - Fix lint errors other than line length

Pull Request - State: closed - Opened by asmacdo 7 months ago - 2 comments

#264 - CI/tools: Add fuse2fs dependency for singularity installation

Pull Request - State: closed - Opened by adswa 8 months ago - 3 comments
Labels: tests

#263 - Singularity installation fails with missing dependency

Issue - State: open - Opened by adswa 8 months ago

#262 - Improving documentation for --url parameter

Pull Request - State: closed - Opened by mhaid 8 months ago - 3 comments
Labels: documentation

#261 - Add changelog entry for isort PR

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 1 comment
Labels: release, documentation

#260 - Run isort across entire codebase

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 3 comments
Labels: release, internal

#259 - Hardcode the name of the package in release action to avoid needing setuptools and invocation of setup.py

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 3 comments
Labels: internal

#258 - just for cleanness -- make lint free

Issue - State: closed - Opened by yarikoptic 9 months ago - 1 comment

#257 - BF: move check for metalad before import of meta_extract

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 3 comments
Labels: release, tests

#256 - Move versioneer configuration from setup.cfg to pyproject.toml

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 4 comments
Labels: release, internal

#255 - Workaround for now missing setuptools which are used in setup.py

Pull Request - State: closed - Opened by yarikoptic 9 months ago - 2 comments
Labels: release, internal

#254 - release fails since build dependencies aren't installed while asking for the version

Issue - State: closed - Opened by yarikoptic 9 months ago - 2 comments

#253 - [gh-actions](deps): Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 3 comments
Labels: release, internal

#252 - Bring in sync with updates to `datalad-extension-template`

Pull Request - State: closed - Opened by jsheunis 11 months ago - 2 comments

#251 - `containers-run` command not recognized in venv installation on mac

Issue - State: closed - Opened by jsheunis 12 months ago - 11 comments

#250 - Stop substitution `{python}` at `containers-run` runtime

Pull Request - State: open - Opened by mih 12 months ago - 5 comments

#249 - `{python}` placeholder implementation non-portable

Issue - State: open - Opened by mih 12 months ago

#248 - Add documentation on using the docker adapter manually

Issue - State: open - Opened by mih 12 months ago - 1 comment

#247 - Add protection against invalid image path declarations for `add`

Pull Request - State: closed - Opened by mih 12 months ago - 5 comments
Labels: patch

#246 - Docker adaptor can retrieve an image from the local docker service

Pull Request - State: open - Opened by mih 12 months ago - 5 comments
Labels: patch

#245 - RF `containers_remove` to not need a `remove` call

Pull Request - State: closed - Opened by mih 12 months ago - 2 comments
Labels: internal

#244 - Replace custom configuration definition with standard approach

Pull Request - State: closed - Opened by mih 12 months ago - 2 comments
Labels: internal

#243 - Unconditionally store image path in POSIX notation in configuration

Pull Request - State: closed - Opened by mih 12 months ago - 3 comments
Labels: windows, patch

#242 - Single-point for reading container configuration

Pull Request - State: closed - Opened by mih 12 months ago - 2 comments
Labels: internal

#241 - Missing `result_renderer='disabled'` for internal datalad command execution

Issue - State: open - Opened by mih 12 months ago

#240 - Discontinue use of `datalad-remove` in `containers-remove`

Issue - State: closed - Opened by mih 12 months ago

#239 - Start using `register_config()`

Issue - State: closed - Opened by mih 12 months ago

#238 - Implement standard utility to read container config

Issue - State: closed - Opened by mih 12 months ago

#237 - Fix scriv issue/pr URL templates

Pull Request - State: closed - Opened by mih 12 months ago - 2 comments

#236 - Scriv changelog template points to datalad-next issues

Issue - State: closed - Opened by mih 12 months ago

#235 - Log into docker to avoid hitting IP-based rate limits

Pull Request - State: closed - Opened by mih 12 months ago - 3 comments

#234 - Bump minimum datalad version?

Issue - State: closed - Opened by mih 12 months ago - 2 comments

#233 - Test battery assumes `singularity` to be installed

Issue - State: open - Opened by mih 12 months ago - 2 comments

#232 - Upgrade versioneer

Pull Request - State: closed - Opened by mih 12 months ago - 2 comments

#231 - Versioneer installation incompatible with Python 3.12

Issue - State: closed - Opened by mih 12 months ago

#230 - Increase Dockerhub rate limit with authentication?

Issue - State: closed - Opened by adswa 12 months ago - 1 comment

#229 - Update appveyor CI to perform non-linux tests too

Issue - State: open - Opened by mih 12 months ago

#228 - DOC: Add example URLs to parameter docstring

Pull Request - State: closed - Opened by adswa 12 months ago - 1 comment

#227 - Support `{python}` placeholder

Pull Request - State: closed - Opened by mih 12 months ago - 8 comments
Labels: minor

#226 - Support `{python}` placeholder for `cmdspec`

Issue - State: closed - Opened by mih 12 months ago

#225 - `containers-add -u docker://...` insufficient permissions

Issue - State: closed - Opened by mih 12 months ago - 2 comments

#224 - `containers-add` produces platform-specific configuration

Issue - State: closed - Opened by mih 12 months ago - 4 comments

#223 - Link essential user documentation

Pull Request - State: closed - Opened by mih 12 months ago - 2 comments

#222 - Update Travis badge

Pull Request - State: closed - Opened by mih 12 months ago - 2 comments

#221 - Robustify installation of singularity (install libfuse2)

Pull Request - State: closed - Opened by yarikoptic almost 1 year ago - 3 comments
Labels: release, internal

#220 - Add readthedocs.yml config file from extension template

Pull Request - State: closed - Opened by adswa about 1 year ago - 3 comments

#219 - No commandline documentation in this extension

Issue - State: closed - Opened by adswa about 1 year ago - 2 comments

#218 - [gh-actions](deps): Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 4 comments
Labels: internal

#217 - BF: make it [] in case of None being returned

Pull Request - State: closed - Opened by yarikoptic about 1 year ago - 3 comments
Labels: patch, release

#216 - test_load_multi_image started to fail

Issue - State: closed - Opened by yarikoptic about 1 year ago

#215 - Add [extras] extras_require with datalad-metalad and add all those extras to [devel]

Pull Request - State: closed - Opened by yarikoptic about 1 year ago - 4 comments
Labels: internal

#214 - test_container_files and test_run_no_explicit_dataset started to fail

Issue - State: closed - Opened by yarikoptic about 1 year ago - 2 comments
Labels: tests

#213 - Fix docs builds

Pull Request - State: closed - Opened by jwodder over 1 year ago - 2 comments
Labels: documentation

#212 - Make install-singularity.sh fail if any step fails

Pull Request - State: closed - Opened by jwodder over 1 year ago - 5 comments
Labels: tests

#211 - Trigger a test CI run

Pull Request - State: closed - Opened by jwodder over 1 year ago - 1 comment

#210 - Remove travis CI

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 6 comments
Labels: tests

#209 - BF: by default stop containers-run on error, to not proceed to save

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 6 comments
Labels: patch, release

#208 - Capture stderr as well while trying for singularity or apptainer to avoid spurious stderr display

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 4 comments
Labels: patch

#207 - Add codespell action,config and fix 1 typo

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 3 comments
Labels: release, internal

#206 - Make `datalad_container.adapters.docker save` assume `latest` if no image version given

Pull Request - State: closed - Opened by jwodder over 1 year ago - 3 comments
Labels: patch

#205 - Add --assume-ready for image and extra-inputs

Pull Request - State: open - Opened by bpinsard over 1 year ago - 4 comments
Labels: minor

#204 - add procedure to configure non-annexing of docker metadata

Pull Request - State: open - Opened by bpinsard over 1 year ago - 5 comments

#203 - Eliminate use of distutils

Pull Request - State: closed - Opened by jwodder over 1 year ago - 4 comments
Labels: internal

#202 - Add `--repo-tag` and `--config` to `datalad_container.adapters.docker run`

Pull Request - State: closed - Opened by jwodder over 1 year ago - 3 comments
Labels: minor

#201 - Introduce {cont_dspath} to contain what {img_dspath} was and fix {img_dspath}

Pull Request - State: open - Opened by yarikoptic over 1 year ago - 2 comments
Labels: minor

#200 - Add singularity inspect metalad extractor

Pull Request - State: closed - Opened by asmacdo over 1 year ago - 7 comments
Labels: minor

#199 - docker: do not get layers if present in local docker service

Issue - State: open - Opened by bpinsard over 1 year ago - 6 comments
Labels: docker

#198 - ENH: Add "container metadata extractor"

Issue - State: closed - Opened by asmacdo over 1 year ago - 6 comments

#197 - gitattributes to not annex docker metadata

Issue - State: open - Opened by bpinsard over 1 year ago - 6 comments
Labels: docker

#196 - Add black and isort with pre-commit?

Issue - State: open - Opened by yarikoptic over 1 year ago
Labels: DX

#195 - RFE: Add --dry-run

Issue - State: open - Opened by asmacdo over 1 year ago - 1 comment

#194 - RFE: Add environment variables option

Issue - State: closed - Opened by asmacdo over 1 year ago - 2 comments

#193 - scriv.ini: Provide full relative path to the templates

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 3 comments
Labels: release, internal

#192 - Account for move of @eval_results in datalad core

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 5 comments
Labels: release, internal

#191 - Add Python 3.9-3.11 to CI to ensure compatibility

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 3 comments
Labels: tests

#190 - Add `--extra-inputs` to `containers-add`

Pull Request - State: closed - Opened by nobodyinperson over 1 year ago - 18 comments
Labels: minor

#189 - Specifying more `extra_inputs` like overlays

Issue - State: closed - Opened by nobodyinperson over 1 year ago - 1 comment

#188 - Install Singularity 3 from an official .deb, use newer ubuntu (jammy) on travis

Pull Request - State: closed - Opened by bpoldrack almost 2 years ago - 12 comments
Labels: tests

#187 - CVE-2007-4559 Patch

Pull Request - State: closed - Opened by TrellixVulnTeam almost 2 years ago - 1 comment

#186 - Fix the "bump" level for breaking changes in .datalad-release-action.yaml

Pull Request - State: closed - Opened by jwodder almost 2 years ago - 6 comments
Labels: internal

#185 - Update GitHub Actions action versions

Pull Request - State: closed - Opened by jwodder almost 2 years ago - 3 comments
Labels: internal

#184 - codespell fix some typos

Pull Request - State: closed - Opened by yarikoptic almost 2 years ago - 3 comments
Labels: release, documentation

#183 - Use datalad/release-action instead of auto

Pull Request - State: closed - Opened by jwodder almost 2 years ago - 3 comments
Labels: internal

#182 - Replace `simplejson` with `json`

Pull Request - State: closed - Opened by christian-monch about 2 years ago - 6 comments

#181 - Replace `simplejson` with `json`

Issue - State: closed - Opened by christian-monch about 2 years ago - 1 comment

#180 - Reenabling tests using SingularityHub

Pull Request - State: closed - Opened by yarikoptic about 2 years ago - 3 comments
Labels: tests

#179 - nose -> pytest, isort imports in tests, unify requirements-devel to correspond to the form as in core

Pull Request - State: closed - Opened by yarikoptic about 2 years ago - 3 comments
Labels: release, tests

#178 - DOC: Set language in Sphinx config to en

Pull Request - State: closed - Opened by adswa over 2 years ago - 1 comment

#177 - Mention that could be installed from conda-forge

Pull Request - State: closed - Opened by yarikoptic over 2 years ago - 2 comments
Labels: release, documentation

#176 - Support for apptainer

Issue - State: open - Opened by adswa over 2 years ago
Labels: singularity

#175 - BF: Disable subdataset result rendering

Pull Request - State: closed - Opened by adswa over 2 years ago - 3 comments

#174 - ``containers-run`` renders internal ``subdatasets`` call

Issue - State: closed - Opened by adswa over 2 years ago - 1 comment

#173 - DOC: A few typos in comments/docstrings

Pull Request - State: closed - Opened by yarikoptic over 2 years ago - 2 comments

GitHub / datalad/datalad-container issues and pull requests