Ecosyste.ms: Issues

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GitHub / datajoint/element-miniscope issues and pull requests

#58 - Remove curation table + update tutorial & devcontainer

Pull Request - State: open - Opened by kushalbakshi 3 months ago

#56 - Add Inscopix metadata ingestion & update table definitions and make functions

Pull Request - State: closed - Opened by kushalbakshi 3 months ago - 1 comment

#55 - Update package requirements + format with `black`

Pull Request - State: closed - Opened by kushalbakshi 8 months ago

#54 - Fix declaration of `get_miniscope_root_data_dir`

Pull Request - State: closed - Opened by MilagrosMarin 9 months ago - 5 comments

#53 - Add Codespaces + update tutorial notebook

Pull Request - State: closed - Opened by kushalbakshi 11 months ago

#52 - revert: :memo: revert docs dark mode cell text color

Pull Request - State: closed - Opened by A-Baji 11 months ago
Labels: bug, documentation

#51 - Add opencv-python to requirements.txt

Pull Request - State: closed - Opened by kushalbakshi about 1 year ago

#50 - Add license scan report and status

Pull Request - State: closed - Opened by fossabot about 1 year ago - 2 comments

#49 - Fix docs formatting

Pull Request - State: closed - Opened by kabilar over 1 year ago

#48 - fix: 🐛 increase git push post buffer size

Pull Request - State: closed - Opened by yambottle over 1 year ago

#47 - Add CaImAn citation

Pull Request - State: closed - Opened by kabilar over 1 year ago

#46 - Remove `Mask` quality metrics table

Pull Request - State: closed - Opened by kabilar over 1 year ago

#45 - Add quality metrics

Pull Request - State: closed - Opened by kabilar over 1 year ago

#44 - Fix dark mode and CI/CD issues

Pull Request - State: closed - Opened by kushalbakshi over 1 year ago

#43 - Fix docs tutorials in dark mode

Pull Request - State: closed - Opened by kushalbakshi over 1 year ago

#42 - Tutorial notebook renders incorrectly in dark mode

Issue - State: closed - Opened by kushalbakshi over 1 year ago - 1 comment

#41 - Add interface to requirements

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#40 - optional caiman pip installation

Pull Request - State: closed - Opened by tdincer over 1 year ago - 1 comment

#39 - Add CaImAn QC metrics

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#38 - Table redesign, Tutorial docs

Pull Request - State: closed - Opened by CBroz1 over 1 year ago

#37 - Add support for MiniAn

Issue - State: open - Opened by CBroz1 almost 2 years ago
Labels: enhancement

#36 - Add NWB export

Issue - State: open - Opened by CBroz1 almost 2 years ago
Labels: enhancement

#35 - Add QC dashboard

Issue - State: closed - Opened by CBroz1 almost 2 years ago
Labels: enhancement

#34 - Add notebook rendering as mkdocs tutorial pages

Issue - State: closed - Opened by CBroz1 almost 2 years ago
Labels: enhancement

#33 - Linting and various cleaning

Pull Request - State: closed - Opened by CBroz1 almost 2 years ago

#32 - Fix broken link in readme

Pull Request - State: closed - Opened by tdincer almost 2 years ago

#31 - Update logo/styling. Add diagram

Pull Request - State: closed - Opened by CBroz1 almost 2 years ago

#30 - Docs tutorial info added

Pull Request - State: closed - Opened by kushalbakshi almost 2 years ago - 4 comments

#29 - Update CICD, Changelog, Code of Conduct for PyPI release

Pull Request - State: closed - Opened by CBroz1 almost 2 years ago - 1 comment

#28 - Added docs + docstrings

Pull Request - State: closed - Opened by kushalbakshi almost 2 years ago - 5 comments

#27 - blackify

Pull Request - State: closed - Opened by CBroz1 over 2 years ago - 3 comments

#26 - Revise variable names to align with changes to `element-calcium-imaging`

Issue - State: closed - Opened by CBroz1 over 2 years ago - 6 comments
Labels: enhancement

#25 - Minor PEP8/Cleaning changes

Pull Request - State: closed - Opened by CBroz1 over 2 years ago - 3 comments

#24 - Null defaults in `Mask` table

Issue - State: closed - Opened by CBroz1 over 2 years ago - 1 comment
Labels: bug

#23 - Review options for ingesting `fps`

Issue - State: closed - Opened by CBroz1 over 2 years ago
Labels: enhancement

#22 - Insert `recording_datetime` into `RecordingInfo` table

Issue - State: closed - Opened by kabilar over 2 years ago - 1 comment
Labels: enhancement

#21 - Fix typo

Pull Request - State: closed - Opened by kabilar over 2 years ago

#20 - Move `recording_directory` to `Recording` part table

Issue - State: closed - Opened by kabilar over 2 years ago - 2 comments
Labels: enhancement

#19 - Obtain RRID

Issue - State: closed - Opened by kabilar over 2 years ago - 3 comments

#18 - Add support for trial-based experiments

Issue - State: closed - Opened by kabilar almost 3 years ago - 1 comment

#17 - Add support for CaImAn CNMF-E analysis package

Issue - State: closed - Opened by kabilar over 3 years ago

#16 - Add support for Miniscope-DAQ-QT V4 acquisition system

Issue - State: closed - Opened by kabilar over 3 years ago

#15 - update requirements

Pull Request - State: closed - Opened by iamamutt almost 3 years ago - 1 comment

#14 - Update requirements.txt

Pull Request - State: closed - Opened by davidgodinez almost 3 years ago - 2 comments

#13 - Add `Miniscope-DAQ-V4` and `CaImAn` trigger

Pull Request - State: closed - Opened by kabilar almost 3 years ago - 3 comments

#12 - Update requirements.txt

Pull Request - State: closed - Opened by davidgodinez almost 3 years ago

#11 - Add support for multiple planes/depths

Issue - State: closed - Opened by kabilar about 3 years ago - 1 comment
Labels: enhancement

#10 - Add quality control metrics

Issue - State: closed - Opened by kabilar about 3 years ago - 2 comments
Labels: enhancement

#9 - Add support for `MiniAn` analysis package

Issue - State: closed - Opened by kabilar about 3 years ago - 1 comment
Labels: enhancement

#8 - Add support for `CaImAn` analysis package

Issue - State: closed - Opened by kabilar about 3 years ago - 1 comment
Labels: enhancement, Epic

#7 - remove 2p terms and adapt with inscopix miniscope

Pull Request - State: closed - Opened by shenshan over 3 years ago - 2 comments

#6 - Table design issues

Issue - State: closed - Opened by shenshan over 3 years ago - 2 comments

#5 - Add support for `Inscopix` acquisition system

Issue - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: enhancement

#4 - Add support for `Inscopix` analysis package

Issue - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: enhancement

#3 - Fix bugs discovered during ingestion of sample dataset

Pull Request - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: bug

#2 - Add support for Miniscope-DAQ-V3 and MiniscopeAnalysis. Update readme and background.

Pull Request - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: documentation, enhancement

#1 - Clone `elements-imaging` into this repository

Issue - State: closed - Opened by kabilar over 3 years ago - 1 comment