Ecosyste.ms: Issues

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GitHub / datajoint/element-deeplabcut issues and pull requests

#131 - Semantic release with GitHub app

Pull Request - State: closed - Opened by yambottle 2 months ago

#130 - Main external storage

Pull Request - State: closed - Opened by ttngu207 2 months ago

#129 - fix(dlc_plots): bugfix import errors

Pull Request - State: closed - Opened by ttngu207 2 months ago

#128 - Pull from `main`

Pull Request - State: closed - Opened by ttngu207 2 months ago

#127 - Pull from `main`

Pull Request - State: closed - Opened by ttngu207 2 months ago

#125 - Pull from `main`

Pull Request - State: closed - Opened by ttngu207 3 months ago

#124 - fix(pose_estimation): Save config to outbox as dj_dlc_config

Pull Request - State: closed - Opened by ttngu207 3 months ago

#123 - feat: store output files from `analyze_videos()` as `filepath`

Pull Request - State: closed - Opened by ttngu207 3 months ago

#120 - feat(pose_estimation): use `memoized_results`

Pull Request - State: closed - Opened by ttngu207 4 months ago

#119 - chore: improve imports, avoid circular dependencies

Pull Request - State: closed - Opened by ttngu207 4 months ago

#118 - docs: :bug: update `mkdocs.yaml`

Pull Request - State: closed - Opened by MilagrosMarin 4 months ago

#117 - Difficulty restarting/resuming training

Issue - State: closed - Opened by twheatcroft07 4 months ago - 1 comment
Labels: question

#116 - Create semantic-release-caller.yml

Pull Request - State: closed - Opened by MilagrosMarin 5 months ago

#115 - Update devcontainer-build-publish-caller.yml

Pull Request - State: closed - Opened by MilagrosMarin 5 months ago

#114 - Create mkdocs-release-caller.yml

Pull Request - State: closed - Opened by MilagrosMarin 5 months ago

#113 - Update devcontainer-build-publish-caller.yml

Pull Request - State: closed - Opened by MilagrosMarin 5 months ago

#112 - Create devcontainer-build-publish-caller.yml

Pull Request - State: closed - Opened by MilagrosMarin 5 months ago

#111 - Fix: style tests

Pull Request - State: closed - Opened by MilagrosMarin 5 months ago

#108 - style: black formatting

Pull Request - State: closed - Opened by ttngu207 8 months ago

#106 - Add pytest

Pull Request - State: closed - Opened by ttngu207 8 months ago

#105 - Code cleanup + minor bugfix in cross platform paths formatting

Pull Request - State: closed - Opened by ttngu207 8 months ago

#104 - Update `model.PoseEstimation` to infer_output_dir

Pull Request - State: closed - Opened by sidhulyalkar 11 months ago - 1 comment

#102 - Update yaml safe loading syntax

Pull Request - State: closed - Opened by sidhulyalkar 12 months ago - 1 comment

#101 - Update `snapshotindex` and `latest_snapshot` designation

Pull Request - State: closed - Opened by sidhulyalkar 12 months ago - 1 comment

#100 - Modify training to update init_weights path

Pull Request - State: closed - Opened by sidhulyalkar 12 months ago

#98 - update `setup.py` to fix conflicting dependencies

Pull Request - State: closed - Opened by MilagrosMarin about 1 year ago - 1 comment

#97 - revert: :memo: revert docs dark mode cell text color

Pull Request - State: closed - Opened by A-Baji about 1 year ago
Labels: bug, documentation

#96 - update `snapshotindex` after training

Pull Request - State: closed - Opened by ttngu207 about 1 year ago

#95 - minor changes to standardize the elements

Pull Request - State: closed - Opened by MilagrosMarin about 1 year ago

#94 - update setup and model

Pull Request - State: closed - Opened by MilagrosMarin about 1 year ago

#93 - Update changelog

Pull Request - State: closed - Opened by MilagrosMarin about 1 year ago - 1 comment

#92 - update `model.py`,tutorial notebook,`changelog`, and `version`

Pull Request - State: closed - Opened by MilagrosMarin about 1 year ago

#91 - Update tutorial and codespace

Pull Request - State: closed - Opened by ttngu207 about 1 year ago

#89 - Merge `workflow-deeplabcut`'s tutorial environment

Pull Request - State: closed - Opened by MilagrosMarin about 1 year ago - 1 comment

#88 - Update version for release

Pull Request - State: closed - Opened by kabilar over 1 year ago

#87 - Fix project path in the pose config file

Pull Request - State: closed - Opened by MilagrosMarin over 1 year ago

#86 - Update GitHub Actions and Readme

Pull Request - State: closed - Opened by kabilar over 1 year ago

#85 - Change pytests to run training deterministically

Issue - State: open - Opened by CBroz1 over 2 years ago
Labels: enhancement

#84 - Merge `workflow-deeplabcut`'s tutorial environment, notebooks, and tests

Pull Request - State: closed - Opened by MilagrosMarin over 1 year ago - 2 comments

#83 - Element deeplabcut update merge into main

Pull Request - State: closed - Opened by trose-neuro over 1 year ago - 1 comment

#82 - add recording key restraint to model.get_trajectory

Issue - State: open - Opened by trose-neuro over 1 year ago - 1 comment
Labels: bug

#81 - Add license scan report and status

Pull Request - State: closed - Opened by fossabot over 1 year ago - 2 comments

#80 - Add DeepLabCut, NWB, and DANDI citations

Pull Request - State: closed - Opened by kabilar over 1 year ago

#79 - Fix dark mode and CI/CD issues

Pull Request - State: closed - Opened by kushalbakshi over 1 year ago

#78 - Fix docs tutorials in dark mode

Pull Request - State: closed - Opened by kushalbakshi over 1 year ago

#77 - Tutorial notebook renders incorrectly in dark mode

Issue - State: closed - Opened by kushalbakshi over 1 year ago - 1 comment

#76 - update changelog and version

Pull Request - State: closed - Opened by sidhulyalkar over 1 year ago - 1 comment

#75 - fix bug

Pull Request - State: closed - Opened by ttngu207 over 1 year ago

#74 - DLC bugfix

Pull Request - State: closed - Opened by sidhulyalkar over 1 year ago - 1 comment

#73 - Add interface to requirements

Pull Request - State: closed - Opened by CBroz1 almost 2 years ago - 1 comment

#72 - Move Rest of DLC imports into make functions

Pull Request - State: closed - Opened by sidhulyalkar almost 2 years ago - 3 comments

#71 - Move evaluate_network import into make function in model.py

Pull Request - State: closed - Opened by sidhulyalkar almost 2 years ago

#70 - Move import into make function

Pull Request - State: closed - Opened by sidhulyalkar almost 2 years ago

#69 - improve "insert_estimation_task"; loading DLC results handles multiple DLC output files

Pull Request - State: closed - Opened by ttngu207 almost 2 years ago - 1 comment

#68 - Update tutorial page

Pull Request - State: closed - Opened by kabilar almost 2 years ago

#67 - Fix requirements for DLC setting tensorflow to be a subpackage

Pull Request - State: closed - Opened by sidhulyalkar almost 2 years ago - 2 comments

#66 - [bugfix] Render notebooks as tutorials

Pull Request - State: closed - Opened by CBroz1 almost 2 years ago

#65 - [bugfix] Remove gitignore item for mkdocs notebook deployment

Pull Request - State: closed - Opened by CBroz1 almost 2 years ago

#64 - Fix changelog for CICD

Pull Request - State: closed - Opened by kabilar about 2 years ago

#63 - Update styling for docs launch

Pull Request - State: closed - Opened by kabilar about 2 years ago

#62 - Fix typos

Pull Request - State: closed - Opened by CBroz1 about 2 years ago - 2 comments

#61 - DLC visualization tool

Pull Request - State: closed - Opened by tdincer about 2 years ago - 6 comments

#60 - change nframes from smallint to int data type

Pull Request - State: closed - Opened by sidhulyalkar about 2 years ago

#59 - fix minor typos & data types

Pull Request - State: closed - Opened by JaerongA about 2 years ago

#58 - Version as env variable

Pull Request - State: closed - Opened by CBroz1 about 2 years ago

#57 - Add 404, chatbot. Remove extra CICD items

Pull Request - State: closed - Opened by CBroz1 about 2 years ago - 1 comment

#56 - Add docs

Pull Request - State: closed - Opened by CBroz1 about 2 years ago - 3 comments

#55 - Tutorials folder with rendered notebooks

Pull Request - State: closed - Opened by CBroz1 about 2 years ago - 2 comments

#54 - Prep for pypi publish

Pull Request - State: closed - Opened by CBroz1 about 2 years ago

#53 - Add docs

Pull Request - State: closed - Opened by CBroz1 about 2 years ago - 2 comments

#52 - add opencv-python-headless in requirements

Pull Request - State: closed - Opened by tdincer about 2 years ago - 2 comments

#51 - bug fix: missing f for formatted string

Pull Request - State: closed - Opened by tdincer about 2 years ago

#50 - relocate imports

Pull Request - State: closed - Opened by tdincer over 2 years ago - 5 comments

#49 - Decrease model_description char length

Pull Request - State: closed - Opened by tdincer over 2 years ago

#48 - Increase model description attr's size

Pull Request - State: closed - Opened by tdincer over 2 years ago

#47 - fix(CICD): 🐛 CICD trigger fixed

Pull Request - State: closed - Opened by yambottle over 2 years ago

#46 - Add NWB export function

Pull Request - State: closed - Opened by CBroz1 over 2 years ago - 2 comments
Labels: NWB

#45 - Add timestamps to `RecordingInfo` for more precise timestamp estimation

Issue - State: open - Opened by CBroz1 over 2 years ago
Labels: enhancement

#44 - `DLC2NWB` tool expects inference video in config

Issue - State: open - Opened by CBroz1 over 2 years ago
Labels: NWB

#43 - fix videotype

Pull Request - State: closed - Opened by tdincer over 2 years ago

#42 - `analyze_videos` fails when passed default `None` videotype

Issue - State: closed - Opened by CBroz1 over 2 years ago
Labels: bug

#41 - Current output path configuration causes issues for `create_labeled_video`

Issue - State: closed - Opened by CBroz1 over 2 years ago - 2 comments
Labels: bug, enhancement

#40 - Changes to parallel workflow integration tests

Pull Request - State: closed - Opened by CBroz1 over 2 years ago - 2 comments

#39 - strtobool depreciation in python 3.10

Issue - State: closed - Opened by CBroz1 over 2 years ago
Labels: bug

#38 - element saved `dlc_config_file`

Issue - State: closed - Opened by CBroz1 over 2 years ago
Labels: bug

#37 - Remove direct dependency for PyPI release

Pull Request - State: closed - Opened by kabilar over 2 years ago
Labels: CI/CD

#36 - deeplabcut expects `config["video_sets"]` to be dict, we save as list

Issue - State: closed - Opened by CBroz1 over 2 years ago - 1 comment
Labels: bug

#35 - changelog fix type | add test release cicd

Pull Request - State: closed - Opened by yambottle over 2 years ago

#34 - NWB export tool integration

Issue - State: closed - Opened by CBroz1 over 2 years ago - 1 comment
Labels: enhancement

#33 - Enable reusable CICD

Pull Request - State: closed - Opened by yambottle over 2 years ago

#32 - modify do_pose_estimation to write config.yaml in dlc_project_path

Pull Request - State: closed - Opened by tdincer over 2 years ago

#31 - revert path find

Pull Request - State: closed - Opened by tdincer over 2 years ago - 1 comment