datajoint/element-calcium-imaging issues and pull requests

#94 - Update version

Pull Request - State: closed - Opened by kabilar almost 2 years ago

#93 - Add `GOOGLE_ANALYTICS_KEY` to CICD

Pull Request - State: closed - Opened by kabilar almost 2 years ago

#92 - Add docs

Pull Request - State: closed - Opened by tdincer almost 2 years ago

#91 - Calcium imaging visualization tool

Pull Request - State: closed - Opened by tdincer almost 2 years ago - 1 comment

#90 - PrairieView Acq added

Pull Request - State: closed - Opened by kushalbakshi almost 2 years ago - 2 comments

#89 - Calcium imaging curation widget

Pull Request - State: closed - Opened by tdincer about 2 years ago

#88 - Integrity protections matching loaded data with `paramset`

Issue - State: open - Opened by CBroz1 about 2 years ago - 1 comment
Labels: enhancement

#87 - bugfix in auto generate ProcessingTask

Pull Request - State: closed - Opened by ttngu207 about 2 years ago

#86 - Simplify `key_source`

Issue - State: open - Opened by dimitri-yatsenko about 2 years ago - 1 comment

#85 - Add installation of external packages

Issue - State: closed - Opened by kabilar about 2 years ago

#84 - Add reusable CICD with test release

Pull Request - State: closed - Opened by yambottle over 2 years ago

#83 - Add `imaging_preprocess` module

Pull Request - State: closed - Opened by kabilar over 2 years ago - 4 comments
Labels: enhancement

#82 - Query simplifications, edits in table explanations, some code refactoring

Pull Request - State: closed - Opened by tdincer over 2 years ago - 11 comments
Labels: enhancement

#81 - Apply the fix scan duration & code refactoring to this branch

Pull Request - State: closed - Opened by tdincer over 2 years ago - 1 comment
Labels: bug

#80 - Add documentation on `imaging_no_curation` module

Issue - State: closed - Opened by kabilar over 2 years ago - 1 comment
Labels: documentation

#79 - Add `ActivityExtractionParamSet` table and fix Nikon scan duration calculation

Pull Request - State: closed - Opened by tdincer over 2 years ago - 3 comments

#78 - blackify

Pull Request - State: closed - Opened by tdincer over 2 years ago

#77 - Update changelog and version for release

Pull Request - State: closed - Opened by kabilar over 2 years ago

#76 - [WIP] Create `imaging_preprocess` module

Pull Request - State: closed - Opened by kabilar over 2 years ago - 1 comment

#75 - Update with `black` code formatting

Issue - State: closed - Opened by CBroz1 over 2 years ago

#72 - Update README

Pull Request - State: closed - Opened by kabilar over 2 years ago - 4 comments
Labels: documentation

#71 - mention Nikon NIS support in the readme

Pull Request - State: closed - Opened by tdincer over 2 years ago

#70 - Scan duration

Issue - State: open - Opened by tdincer over 2 years ago
Labels: enhancement

#69 - bug fix: parenthesis misplacement

Pull Request - State: closed - Opened by tdincer over 2 years ago

#68 - scan duration estimations

Pull Request - State: closed - Opened by tdincer over 2 years ago

#67 - introduced ActivityExtractionParamSet

Pull Request - State: closed - Opened by ttngu207 over 2 years ago - 3 comments

#66 - Remove extra outputdir definitions in the processing

Pull Request - State: closed - Opened by tdincer over 2 years ago - 1 comment

#65 - extra use of output_dir in the Processing

Issue - State: closed - Opened by tdincer over 2 years ago
Labels: high priority

#64 - assign suite2p par fs within the Processing

Pull Request - State: closed - Opened by tdincer over 2 years ago - 1 comment

#63 - add `scan_datetime` and `scan_duration`

Pull Request - State: closed - Opened by ttngu207 over 2 years ago - 2 comments

#62 - Make attributes nullable for the case when `motor_position_at_zero` is empty

Pull Request - State: closed - Opened by kabilar over 2 years ago - 5 comments

#61 - Nikon-related changes & auto_generate functions

Pull Request - State: closed - Opened by tdincer over 2 years ago - 4 comments

#60 - add module for imaging with no curation

Pull Request - State: closed - Opened by ttngu207 over 2 years ago

#59 - Add automated mask classification

Issue - State: closed - Opened by kabilar over 2 years ago - 1 comment

#58 - Added trigger support to run caiman analysis pipeline

Pull Request - State: closed - Opened by tdincer over 2 years ago - 4 comments

#57 - Updated element-calcium-imaging diagram

Pull Request - State: closed - Opened by tdincer over 2 years ago - 1 comment

#56 - Rename `element-data-loader` to `element-interface`

Pull Request - State: closed - Opened by kabilar over 2 years ago

#55 - Trigger Suite2p in a resumable fashion

Issue - State: closed - Opened by kabilar over 2 years ago - 1 comment
Labels: enhancement

#54 - Bug in the `Processing`'s make function when there is no processed image.

Issue - State: closed - Opened by tdincer over 2 years ago - 1 comment

#53 - Trigger suite2p within the element

Pull Request - State: closed - Opened by tdincer over 2 years ago - 1 comment

#52 - Expand `Equipment` mention in `README`

Issue - State: open - Opened by CBroz1 almost 3 years ago - 2 comments
Labels: documentation

#51 - Add specificity in `scan.py/activate` docstring regarding `linking_module`

Issue - State: closed - Opened by CBroz1 almost 3 years ago - 2 comments
Labels: documentation, good first issue

#49 - Create multi-scan processing imaging module

Issue - State: closed - Opened by kabilar almost 3 years ago - 1 comment
Labels: enhancement

#48 - Use `get_session_directory` function

Issue - State: open - Opened by kabilar about 3 years ago
Labels: enhancement

#47 - Add quality control metrics

Issue - State: closed - Opened by kabilar about 3 years ago - 2 comments
Labels: enhancement

#45 - Add support for `element-data-loader`; Version lock requirements

Pull Request - State: closed - Opened by kabilar over 3 years ago

#44 - bugfix in multi-scan ingestion - added tests in workflow

Pull Request - State: closed - Opened by ttngu207 over 3 years ago

#34 - Update `element-calcium-imaging` diagrams

Issue - State: closed - Opened by kabilar over 3 years ago - 4 comments
Labels: documentation

#33 - Add support for Inscopix analysis package

Issue - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: enhancement

#31 - Add process for versioning and releasing package

Issue - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: documentation

#30 - Add contribution guidelines, code of conduct, issue templates

Issue - State: closed - Opened by kabilar over 3 years ago
Labels: documentation

#28 - Add support for loader developed by user

Issue - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: enhancement

#25 - Add support for manually curated masks

Issue - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: enhancement

#22 - Add support to run CaImAn analysis

Issue - State: closed - Opened by kabilar over 3 years ago
Labels: enhancement, high priority

#21 - Add support to run Suite2p analysis

Issue - State: closed - Opened by kabilar over 3 years ago
Labels: enhancement

#19 - Add support for MiniAn analysis package

Issue - State: closed - Opened by kabilar over 3 years ago - 1 comment
Labels: enhancement

#16 - Extract and store additional data recorded in the aux channels

Issue - State: open - Opened by ttngu207 over 3 years ago
Labels: enhancement

#14 - Add support for CellReg analysis package

Issue - State: closed - Opened by kabilar over 3 years ago - 3 comments
Labels: enhancement

#13 - Save version of analysis package

Issue - State: open - Opened by kabilar over 3 years ago - 3 comments
Labels: enhancement

#10 - added support for ScanBox

Pull Request - State: closed - Opened by ttngu207 over 3 years ago

GitHub / datajoint/element-calcium-imaging issues and pull requests