Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / datajoint/element-calcium-imaging issues and pull requests
#196 - Improve plotting in tutorial and minor updates to standardize with other Elements
Pull Request -
State: closed - Opened by MilagrosMarin 4 months ago
#195 - fix: skip ingesting for rigid motion correction - suite2p no longer output the shifts
Pull Request -
State: closed - Opened by ttngu207 5 months ago
#194 - fix: robust handling of paths between steps (tables)
Pull Request -
State: closed - Opened by ttngu207 6 months ago
#193 - fix: bugfix getting abs path
Pull Request -
State: closed - Opened by ttngu207 6 months ago
#192 - Add ROI drawing widget
Pull Request -
State: closed - Opened by kushalbakshi 6 months ago
#191 - fix(field_processing): fix key_source to multi-field only
Pull Request -
State: closed - Opened by ttngu207 6 months ago
#190 - Minor fix: infer/make output dir and improve key_source
Pull Request -
State: closed - Opened by ttngu207 6 months ago
#189 - Add ROI drawing widget for manual curation
Pull Request -
State: closed - Opened by kushalbakshi 6 months ago
- 1 comment
#188 - Add pytest
Pull Request -
State: closed - Opened by ttngu207 7 months ago
#187 - Image processing / segmentation on a per-field basis
Pull Request -
State: closed - Opened by ttngu207 7 months ago
#186 - Image processing / segmentation on a per-field basis
Pull Request -
State: closed - Opened by ttngu207 7 months ago
#185 - make output_dir if not exist for task_mode="trigger" & update ScanInfo for mesocans
Pull Request -
State: closed - Opened by ttngu207 8 months ago
#184 - Update element-interface to `staging` branch
Pull Request -
State: closed - Opened by kushalbakshi 8 months ago
#183 - Caiman per plane processing
Pull Request -
State: closed - Opened by ttngu207 8 months ago
#182 - Fix merge conflict
Pull Request -
State: closed - Opened by ttngu207 8 months ago
#181 - pull from main
Pull Request -
State: closed - Opened by ttngu207 8 months ago
#180 - Fix - Remove `plane_idx` from `write_single_bigtiff()`
Pull Request -
State: closed - Opened by kushalbakshi 8 months ago
#179 - Adding New Acquisition Software, ThorImage
Issue -
State: open - Opened by Paschas 8 months ago
Labels: enhancement
#176 - Minor fixes to notebooks
Pull Request -
State: closed - Opened by kushalbakshi 9 months ago
#175 - Update tutorial notebook and minor fixes
Pull Request -
State: closed - Opened by kushalbakshi 10 months ago
#174 - Add multi-plane processing using CaImAn
Pull Request -
State: closed - Opened by kushalbakshi 10 months ago
#173 - revert: :memo: revert docs dark mode cell text color
Pull Request -
State: closed - Opened by A-Baji 11 months ago
Labels: bug, documentation
#172 - Revert old `slice` commit
Pull Request -
State: closed - Opened by kushalbakshi 12 months ago
#171 - Formatting + Fix typo indicies -> indices
Pull Request -
State: closed - Opened by kushalbakshi 12 months ago
#170 - Add motion correction indicies to caiman params
Pull Request -
State: closed - Opened by kushalbakshi 12 months ago
- 1 comment
#169 - Fix docs - Missing left navigation sidebar
Pull Request -
State: closed - Opened by kabilar about 1 year ago
Labels: bug
#168 - Update `mkdocs.yaml` and typo in `setup.py`
Pull Request -
State: closed - Opened by MilagrosMarin about 1 year ago
#167 - Hard fix 'force_sktiff' suite2p parameter
Pull Request -
State: closed - Opened by sidhulyalkar about 1 year ago
#166 - Fix `PrairieViewMeta` import statements
Pull Request -
State: closed - Opened by kushalbakshi about 1 year ago
#165 - bugfix in infer_output_dir
Pull Request -
State: closed - Opened by ttngu207 about 1 year ago
#164 - bugfix in `infer_output_dir`
Pull Request -
State: closed - Opened by ttngu207 about 1 year ago
#163 - pull from upsteam main
Pull Request -
State: closed - Opened by ttngu207 about 1 year ago
#162 - pull from `main`
Pull Request -
State: closed - Opened by ttngu207 about 1 year ago
#161 - Per plane processing
Pull Request -
State: closed - Opened by ttngu207 about 1 year ago
#160 - Bugfix: rename get_image_files to get_calcium_imaging_files
Pull Request -
State: closed - Opened by sidhulyalkar about 1 year ago
- 4 comments
#159 - Add z drift metrics to `imaging.py`
Pull Request -
State: open - Opened by kushalbakshi about 1 year ago
#158 - Update `get_calcium_imaging_files` and installation instructions
Pull Request -
State: closed - Opened by kabilar about 1 year ago
#157 - Update version for release
Pull Request -
State: closed - Opened by kabilar about 1 year ago
#156 - Export from DataJoint Element to NWB
Pull Request -
State: closed - Opened by kushalbakshi about 1 year ago
#155 - Update import statement for prairie_view_loader
Pull Request -
State: closed - Opened by kushalbakshi about 1 year ago
- 1 comment
#154 - Update GitHub Actions, Dev Container, and dependencies
Pull Request -
State: closed - Opened by kabilar about 1 year ago
#153 - Add license scan report and status
Pull Request -
State: closed - Opened by fossabot about 1 year ago
- 1 comment
#152 - Update README and Dev Container
Pull Request -
State: closed - Opened by kabilar about 1 year ago
- 1 comment
#151 - Patch issue with nullable attributes
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#150 - Update requirements
Pull Request -
State: closed - Opened by kabilar over 1 year ago
#149 - Update Codespace configuration
Pull Request -
State: closed - Opened by kabilar over 1 year ago
#148 - Remove requirements
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#147 - Remove host requirements
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#146 - Fix output of cells in `tutorial` notebook
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#145 - Update tutorial notebook
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#144 - Fix docs and `get_imaging_root_data_dir` function
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#143 - Use `get_session_directory` function
Issue -
State: closed - Opened by kabilar about 3 years ago
- 1 comment
Labels: enhancement
#142 - Add pytests for trial-based experiments
Issue -
State: open - Opened by kabilar almost 3 years ago
- 2 comments
Labels: enhancement
#141 - Add pytest for multiple root data directories
Issue -
State: open - Opened by kabilar over 2 years ago
#140 - Add an upstream table for `scan.ScanLocation`
Issue -
State: open - Opened by CBroz1 over 2 years ago
Labels: bug
#139 - Remove order requirements for `test_pipeline_generation.py`
Issue -
State: closed - Opened by CBroz1 over 2 years ago
Labels: bug
#138 - Pytest QOL improvements
Issue -
State: open - Opened by CBroz1 over 2 years ago
Labels: enhancement
#137 - Add pytests for CaImAn 2D and 3D datasets
Issue -
State: open - Opened by kabilar over 3 years ago
Labels: enhancement
#136 - Add CaImAn, Suite2p, and EXTRACT citations
Pull Request -
State: closed - Opened by kabilar over 1 year ago
#135 - Integrate `workflow-calcium-imaging`'s tutorial environment, notebooks, and tests
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#134 - Update docs
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#133 - Fix dark mode and CI/CD issues
Pull Request -
State: closed - Opened by kushalbakshi over 1 year ago
#132 - Fix docs tutorials in dark mode
Pull Request -
State: closed - Opened by kushalbakshi over 1 year ago
#131 - Tutorial notebook renders incorrectly in dark mode
Issue -
State: closed - Opened by kushalbakshi over 1 year ago
- 1 comment
#130 - Add quality metrics
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#129 - Update version for element-interface requirement
Pull Request -
State: closed - Opened by kushalbakshi over 1 year ago
#128 - New activity
Pull Request -
State: closed - Opened by ttngu207 over 1 year ago
- 1 comment
#127 - Issue #49
Pull Request -
State: closed - Opened by MauryaRitesh over 1 year ago
- 2 comments
#126 - Fix bug with docs release
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#125 - Add requirement for `ipywidgets`
Pull Request -
State: closed - Opened by kushalbakshi over 1 year ago
- 1 comment
#124 - Update `requirements.txt` and `scan.py`
Pull Request -
State: closed - Opened by virenvarma007 over 1 year ago
- 4 comments
#123 - Fix to render images inline
Pull Request -
State: closed - Opened by kabilar over 1 year ago
- 1 comment
#122 - Update changelog and version for new release
Pull Request -
State: closed - Opened by sidhulyalkar over 1 year ago
#121 - fix Tuple ()->[] bug
Pull Request -
State: closed - Opened by sidhulyalkar over 1 year ago
- 1 comment
#120 - Notebook rendering and linting
Pull Request -
State: closed - Opened by CBroz1 over 1 year ago
- 6 comments
#119 - Looking for contacts in France
Issue -
State: closed - Opened by phanhuynh over 1 year ago
- 3 comments
#118 - Update version.py
Pull Request -
State: closed - Opened by kushalbakshi over 1 year ago
#117 - Update CHANGELOG
Pull Request -
State: closed - Opened by kushalbakshi over 1 year ago
#116 - Fix docs link
Pull Request -
State: closed - Opened by kabilar over 1 year ago
#115 - bugfix, detect and infer empty-string outputdir
Pull Request -
State: closed - Opened by ttngu207 over 1 year ago
#114 - add caiman processing on interleaved data
Pull Request -
State: closed - Opened by tdincer over 1 year ago
#113 - Rearrange requirements installation
Pull Request -
State: closed - Opened by tdincer over 1 year ago
- 1 comment
#112 - Broken link fix.
Pull Request -
State: closed - Opened by tdincer over 1 year ago
#111 - Error fix in `ScanInfo` for PrairieView scans
Pull Request -
State: closed - Opened by kushalbakshi over 1 year ago
- 5 comments
#110 - bugfix, store output_dir as relative path
Pull Request -
State: closed - Opened by ttngu207 over 1 year ago
- 4 comments
#109 - Add imports for Bruker PrairieView data
Pull Request -
State: closed - Opened by kushalbakshi almost 2 years ago
- 2 comments
#108 - Add support to run EXTRACT
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
- 3 comments
#107 - Add quality metrics
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
- 9 comments
#106 - add missing "unique index (param_set_hash)"
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
#105 - limit TraceReport to the masks with traces
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
#104 - bugfix comment
Pull Request -
State: closed - Opened by ttngu207 almost 2 years ago
#103 - fix image scaling
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
#102 - suite2p - update params with: fs, nplanes, nchannels
Pull Request -
State: closed - Opened by ttngu207 almost 2 years ago
#101 - Mkdocs deplpoyment + styling
Pull Request -
State: closed - Opened by CBroz1 almost 2 years ago
- 2 comments
#100 - bug fix: np.quantile input
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
#99 - remove cv2 import
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
#98 - parse scan datetime from nd2 files
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
#97 - version.py updated for previous merge
Pull Request -
State: closed - Opened by kushalbakshi almost 2 years ago
#96 - add plotting package in requirements
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
#95 - Documentation
Pull Request -
State: closed - Opened by tdincer almost 2 years ago
- 1 comment