Ecosyste.ms: Issues

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GitHub / datajoint/element-array-ephys issues and pull requests

#212 - fix: fix release titles in Changelog

Pull Request - State: closed - Opened by MilagrosMarin 20 days ago

#211 - fix: revert Changelog style

Pull Request - State: closed - Opened by MilagrosMarin about 1 month ago

#210 - Fix(spikeglx): robust IMAX value detection from IMEC file

Pull Request - State: closed - Opened by kushalbakshi 4 months ago

#209 - Implement robust IMAX value detection from IMEC file

Pull Request - State: closed - Opened by kushalbakshi 4 months ago

#208 - update downstream ephys tables ingestion when NO UNIT found

Pull Request - State: closed - Opened by ttngu207 4 months ago

#207 - Update tests to also run on Python 3.9-3.12 like `datajoint/datajoint-python`

Issue - State: open - Opened by tabedzki 5 months ago
Labels: enhancement

#206 - `ProbeType.create_neuropixels_probe` warning message improvements

Issue - State: open - Opened by tabedzki 5 months ago
Labels: bug

#205 - chore(.github): add new GitHub Action callers

Pull Request - State: closed - Opened by MilagrosMarin 5 months ago

#204 - Pull from `main`

Pull Request - State: closed - Opened by ttngu207 5 months ago

#203 - Pull from `main`

Pull Request - State: closed - Opened by ttngu207 5 months ago

#198 - Fix regex patterns and add minimum version for scikit-image

Pull Request - State: closed - Opened by tabedzki 6 months ago - 4 comments

#197 - fix: recording_extractor_full_dict is deprecated

Pull Request - State: closed - Opened by ttngu207 8 months ago

#195 - feat: separate `export` (phy and report) into a separate table

Pull Request - State: closed - Opened by ttngu207 8 months ago

#194 - fix: remove `job_kwargs` for sparsity calculation - memory error in linux container

Pull Request - State: closed - Opened by ttngu207 9 months ago - 1 comment

#192 - fix: use relative path for phy output

Pull Request - State: closed - Opened by ttngu207 9 months ago

#191 - code cleanup + bugfix

Pull Request - State: closed - Opened by ttngu207 9 months ago - 1 comment

#190 - Dev spikeinterface v101

Pull Request - State: closed - Opened by ttngu207 9 months ago

#189 - refactor: quality metrics

Pull Request - State: closed - Opened by MilagrosMarin 10 months ago - 2 comments

#188 - [WIP] Refactor: quality metrics

Pull Request - State: closed - Opened by MilagrosMarin 10 months ago

#186 - Pull from `main` - minor bugfix

Pull Request - State: closed - Opened by ttngu207 10 months ago

#185 - Add pytest

Pull Request - State: closed - Opened by JaerongA 11 months ago

#184 - Fix & cleanup ephys_no_curation.py & si_spike_sorting.py

Pull Request - State: closed - Opened by JaerongA 11 months ago
Labels: enhancement

#183 - Minor change: remove pypi release from `release.yaml`

Pull Request - State: closed - Opened by MilagrosMarin about 1 year ago

#180 - Update `ephys_acute` to latest version in `modular-clustering`

Pull Request - State: closed - Opened by kushalbakshi about 1 year ago

#179 - SpikeInterface integration (WIP)

Pull Request - State: closed - Opened by JaerongA about 1 year ago - 1 comment

#178 - Update CHANGELOG and `version.py`

Pull Request - State: closed - Opened by MilagrosMarin about 1 year ago

#177 - spike interface integration

Pull Request - State: closed - Opened by JaerongA about 1 year ago - 2 comments

#176 - Update setup dependencies + tutorial setup + fix diagram

Pull Request - State: closed - Opened by kushalbakshi about 1 year ago

#175 - revert: :memo: revert docs dark mode cell text color

Pull Request - State: closed - Opened by A-Baji over 1 year ago
Labels: bug, documentation

#174 - Improvements in `element-array-ephys` tutorial and README

Pull Request - State: closed - Opened by MilagrosMarin over 1 year ago

#173 - Add DevContainers + Codespaces tutorial

Pull Request - State: closed - Opened by kushalbakshi over 1 year ago - 1 comment

#172 - bugfix - support older python versions

Pull Request - State: closed - Opened by ttngu207 over 1 year ago - 1 comment

#171 - update spikeglx loader to handle spikeglx ver 20230202

Pull Request - State: closed - Opened by ttngu207 over 1 year ago

#170 - Pull from `main`

Pull Request - State: closed - Opened by ttngu207 over 1 year ago - 1 comment

#169 - New spikeglx and probeinterface

Pull Request - State: closed - Opened by ttngu207 over 1 year ago - 1 comment

#168 - Compatibility with SpikeGLX 20230202-phase30 or later

Issue - State: closed - Opened by ttngu207 over 1 year ago
Labels: enhancement

#167 - Fix catGT rerun condition

Pull Request - State: closed - Opened by sidhulyalkar over 1 year ago

#166 - Add license scan report and status

Pull Request - State: closed - Opened by fossabot over 1 year ago - 1 comment

#165 - Patch issue with nullable attributes

Pull Request - State: closed - Opened by kabilar over 1 year ago - 1 comment

#164 - Integrate `workflow-array-ephys`'s tutorial environment, notebooks, and tests

Pull Request - State: closed - Opened by kabilar over 1 year ago - 1 comment

#163 - NWB-export.ipynb error

Issue - State: open - Opened by JaerongA almost 2 years ago
Labels: bug

#162 - Cannot find query.csv

Issue - State: open - Opened by JaerongA almost 2 years ago
Labels: bug

#161 - Current `pipeline.py` logic launches error if `ephys_mode` not `no_curation`

Issue - State: open - Opened by CBroz1 over 2 years ago
Labels: bug

#160 - Add 3D probe trajectory plots to `08-electrode-localization.ipynb`

Issue - State: open - Opened by kabilar almost 3 years ago
Labels: enhancement, good first issue

#159 - Add additional NWB export pytests

Issue - State: open - Opened by kabilar almost 3 years ago - 1 comment
Labels: good first issue, NWB

#158 - Add NWB export pytest to verify LFP data is the same for both export functions

Issue - State: open - Opened by kabilar almost 3 years ago
Labels: good first issue, NWB

#157 - Simply pytests `subjects_csv` and `sessions_csv` by removing pandas dependency

Issue - State: open - Opened by CBroz1 about 3 years ago - 1 comment
Labels: enhancement, good first issue

#156 - Cannot parse filename for probe insertion number for SpikeGLX Phase 3A probes

Issue - State: open - Opened by kabilar over 3 years ago
Labels: bug

#155 - Create light dataset that can be used as demo with `workflow-array-ephys`

Issue - State: open - Opened by kabilar over 3 years ago - 2 comments

#154 - FileNotFoundError in demo_prepare.ipynb

Issue - State: open - Opened by vncntprvst almost 2 years ago - 1 comment
Labels: bug

#153 - Updates to fix catGT processing

Pull Request - State: closed - Opened by sidhulyalkar over 1 year ago

#152 - Changes to fit DeAngelis pipeline

Pull Request - State: closed - Opened by JaerongA over 1 year ago

#151 - Fix readability of tables in dark mode

Pull Request - State: closed - Opened by kabilar over 1 year ago - 1 comment

#150 - Add Kilosort, NWB, and DANDI citations

Pull Request - State: closed - Opened by kabilar over 1 year ago

#149 - Fix notebook output in dark mode

Pull Request - State: closed - Opened by kushalbakshi almost 2 years ago

#148 - Fix docs tutorials in dark mode

Pull Request - State: closed - Opened by kushalbakshi almost 2 years ago

#147 - Tutorial notebook renders incorrectly in dark mode

Issue - State: closed - Opened by kushalbakshi almost 2 years ago - 1 comment

#146 - Remap `metrics.csv` column names

Pull Request - State: closed - Opened by JaerongA almost 2 years ago

#145 - change attribute names

Pull Request - State: closed - Opened by JaerongA almost 2 years ago
Labels: bug

#144 - lowercase all column names in metrics.csv

Pull Request - State: closed - Opened by JaerongA almost 2 years ago
Labels: bug

#143 - Update version and changelog for release

Pull Request - State: closed - Opened by kabilar almost 2 years ago - 1 comment

#142 - Update kilosort_triggering.py

Pull Request - State: closed - Opened by ttngu207 almost 2 years ago - 3 comments

#141 - pull from main

Pull Request - State: closed - Opened by ttngu207 almost 2 years ago

#140 - better logging of exec duration

Pull Request - State: closed - Opened by ttngu207 almost 2 years ago

#139 - Modular clustering SpikeGLX update

Pull Request - State: closed - Opened by sidhulyalkar almost 2 years ago

#138 - Update docs for quality metrics

Pull Request - State: closed - Opened by JaerongA almost 2 years ago - 6 comments
Labels: documentation

#137 - Update requirements for plotting widget

Pull Request - State: closed - Opened by kabilar almost 2 years ago - 1 comment

#136 - modules_input_hash computed from just the parameters, not including t…

Pull Request - State: closed - Opened by ttngu207 almost 2 years ago

#135 - decouple the step to check the median subtraction status + bugfixes

Pull Request - State: closed - Opened by ttngu207 almost 2 years ago

#134 - minor bugfix

Pull Request - State: closed - Opened by ttngu207 almost 2 years ago

#133 - Modular clustering - fix incorrect delete of `continuous.dat`

Pull Request - State: closed - Opened by ttngu207 almost 2 years ago

#132 - Add 0.2.3 release date

Pull Request - State: closed - Opened by CBroz1 about 2 years ago

#131 - Parametrize Modules

Pull Request - State: closed - Opened by sidhulyalkar about 2 years ago

#130 - Modular clustering

Pull Request - State: closed - Opened by ttngu207 about 2 years ago - 1 comment

#129 - Modular clustering

Pull Request - State: closed - Opened by ttngu207 about 2 years ago - 1 comment

#128 - fix removing outdated files/directory

Pull Request - State: closed - Opened by ttngu207 about 2 years ago

#127 - Fix to only remove specified ks output files

Pull Request - State: closed - Opened by sidhulyalkar about 2 years ago - 1 comment

#126 - Fix multiple hash kilosort output issue

Pull Request - State: closed - Opened by sidhulyalkar about 2 years ago

#125 - Adjusting pyopenephys requirement for pypi publication

Pull Request - State: closed - Opened by CBroz1 about 2 years ago - 1 comment

#124 - Cleanup docstrings, add notebook render

Pull Request - State: closed - Opened by CBroz1 about 2 years ago - 1 comment

#123 - nwb dependency update

Issue - State: closed - Opened by CBroz1 about 2 years ago
Labels: bug

#122 - Revert import order

Pull Request - State: closed - Opened by JaerongA about 2 years ago
Labels: bug

#120 - Docstring changes for docs API

Pull Request - State: closed - Opened by kushalbakshi about 2 years ago - 3 comments

#119 - Add QC dashboard

Pull Request - State: closed - Opened by CBroz1 about 2 years ago - 1 comment

#118 - Add pre-commit & update docstrings & various fixes

Pull Request - State: closed - Opened by JaerongA about 2 years ago - 7 comments

#116 - modify build_electrodes function

Pull Request - State: closed - Opened by JaerongA about 2 years ago - 5 comments
Labels: enhancement

#115 - Remove ibllib dependency

Pull Request - State: closed - Opened by iamamutt about 2 years ago

#114 - Various fixes and improvements - no new feature

Pull Request - State: closed - Opened by ttngu207 about 2 years ago - 1 comment

#113 - Update README.md

Pull Request - State: closed - Opened by tdincer about 2 years ago