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GitHub / databiosphere/dog-aging-ingest issues and pull requests

#231 - New samples refresh workflow

Pull Request - State: closed - Opened by quazi-h almost 3 years ago - 1 comment

#230 - Resolving github actions error

Pull Request - State: closed - Opened by quazi-h almost 3 years ago - 1 comment

#229 - Update required fields for Samples

Pull Request - State: closed - Opened by quazi-h almost 3 years ago - 1 comment

#228 - Bugfix for samples production pipeline

Pull Request - State: closed - Opened by quazi-h about 3 years ago - 1 comment

#226 - Added a filter on the samples pipeline for k1_tube_serial

Pull Request - State: closed - Opened by quazi-h over 3 years ago - 2 comments

#225 - AFUS Dog Transformations

Pull Request - State: open - Opened by quazi-h over 3 years ago

#224 - Force TSV Column Order + Process AfusOwner Data

Pull Request - State: open - Opened by quazi-h over 3 years ago - 1 comment

#223 - AFUS Transformation Pipeline and AfusOwner Transformations

Pull Request - State: closed - Opened by quazi-h over 3 years ago - 1 comment

#218 - Update TSV output for Firecloud compatibility

Pull Request - State: closed - Opened by quazi-h almost 4 years ago - 1 comment

#199 - Upload files to a GCS bucket at the end of a refresh

Pull Request - State: closed - Opened by quazi-h almost 4 years ago - 1 comment

#198 - Updating Samples CRON Schedule

Pull Request - State: closed - Opened by quazi-h almost 4 years ago - 1 comment

#196 - Automate weekly sample refresh runs

Pull Request - State: closed - Opened by quazi-h almost 4 years ago - 1 comment

#191 - Automate DAP sample TSV weekly

Pull Request - State: closed - Opened by eparkmonster about 4 years ago - 1 comment

#189 - Fix Environment Extraction Pipeline

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 1 comment

#188 - Rename EOLS Variable

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 1 comment

#187 - Fix github action

Pull Request - State: closed - Opened by aherbst-broad about 4 years ago - 1 comment

#186 - Add tests for the transformation pipelines

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 1 comment

#185 - Refactor TruncatedDecimalError as a warning

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 2 comments

#184 - Add sample and EOLS dagster dap orchestration to pipeline

Pull Request - State: closed - Opened by eparkmonster about 4 years ago - 1 comment

#183 - Refactor EOLS Extraction Filters and fix transformation issues

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 1 comment

#182 - Extend EOLS transformations code to process illness fields

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 2 comments

#181 - Create Death transformation EOLS DAP

Pull Request - State: closed - Opened by eparkmonster about 4 years ago - 1 comment

#180 - Extend EOLS transformations code to process euthanasia fields

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 1 comment

#179 - Extend EOLS transformations code to process eol_med_symptoms fields

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 2 comments

#178 - EOLS new Condition transformation DAP pipeline

Pull Request - State: closed - Opened by eparkmonster about 4 years ago - 1 comment

#177 - Extend EOLS transformations code to process recent_aging_characteristics fields

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 2 comments

#176 - [DSPDC-1817] Refactor common transformation record grouping code

Pull Request - State: closed - Opened by aherbst-broad about 4 years ago - 2 comments

#175 - Update sample table primary key and update column names

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 2 comments

#174 - Group CSLB records by record, redcap_event_name

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 1 comment

#172 - [DSPDC-1771] Add explicit inter-solid dependencies

Pull Request - State: closed - Opened by aherbst-broad about 4 years ago - 1 comment

#171 - Mapping CSV Tool and EOLS General Transformations Code

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 2 comments

#170 - ra dspdc 1786 purge argo orchestration code

Pull Request - State: closed - Opened by raaidbroad about 4 years ago - 2 comments

#169 - Update DAP docs to reflect reality

Pull Request - State: closed - Opened by quazi-h about 4 years ago - 2 comments

#168 - Upgrade ingest-utils

Pull Request - State: closed - Opened by aherbst-broad about 4 years ago - 1 comment

#167 - Add sample to refresh and tsv scripts DAP

Pull Request - State: closed - Opened by eparkmonster about 4 years ago - 1 comment

#166 - Create sample transformation pipeline

Pull Request - State: closed - Opened by eparkmonster about 4 years ago - 1 comment

#165 - Add repository + workspace yaml for refresh execution from cli

Pull Request - State: closed - Opened by aherbst-broad about 4 years ago

#164 - Refactor DAP beam runners and import dagster_utils

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 4 comments

#161 - [DSPDC-1711] Create toplevel condition dummy records when needed

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#160 - DAP Dagster Refresh Pipeline

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#159 - Update weekly refresh logic

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#155 - Update Pipeline Calls

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#154 - Primary Dog Activity Level

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#153 - Fix DAP ID Issues (primary keys)

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#151 - Add a new column to hles_health_condition

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#150 - Revise Eye Condition Causes

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#148 - Single TSV for hles_dog

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 4 comments

#144 - Allow specifying which pipelines to refresh when invoking manual refresh

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 1 comment

#143 - Created sample tracking table

Pull Request - State: closed - Opened by eparkmonster over 4 years ago - 1 comment

#142 - Added new TSV validations

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#141 - Update country counter integers

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#139 - Removing past residence country 3-10

Pull Request - State: closed - Opened by eparkmonster over 4 years ago - 2 comments

#138 - update logic and tests for single past country

Pull Request - State: closed - Opened by raaidbroad over 4 years ago - 1 comment

#137 - Expanded integration tests for DAP extraction pipeline

Pull Request - State: closed - Opened by eparkmonster over 4 years ago - 1 comment

#134 - Add new columns for past country residence

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 2 comments

#133 - Undo changes to activity parser

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#132 - Add data validation test

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#130 - Fix comment format

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#129 - Pull correct spay neuter age RC variables

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#128 - Pull in upgraded ingest-utils to fix missing docker image

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#127 - Update fs_pcvet_email_yn to pass through numeric value of 1/7/8 instead of boolean

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 1 comment

#126 - Un-negate 'without owner' dog activity questions to be 'with owner' instead

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 1 comment

#125 - Do not filter out 0s for these values

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#124 - Remove redundant st_batch_label variable

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#123 - Allow specifying state when 'US-born' is set to 'unknown'

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 1 comment

#122 - Fix date-based filtering in CSLB by moving date filter back one second

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 1 comment

#121 - Fixed inconsistencies in activities parser

Pull Request - State: closed - Opened by eparkmonster over 4 years ago - 1 comment

#120 - Update deprecated address fields for past dog residences

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#119 - Removing duplicated address fields between two tables

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 2 comments

#118 - Added new columns for "none" options on shampoo types used

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#116 - Add new columns for supplement gating questions

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#115 - Add a new field hles_dog field "hs_alternative_care_none"

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#113 - qh-dspdc-1461-mapping-table-bugs

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 2 comments

#112 - Point at correct redcap variable for expected weight

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#111 - Add back dePastResidenceZipCount

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#109 - Qh dspdc 1445 inject puppy weight

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 2 comments

#107 - Strip newline and tab characters from all free description fields

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 3 comments

#106 - Use all address fields for environment table tsv primary key

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 1 comment

#103 - Strip DOS and UNIX carriage returns

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 2 comments

#98 - Strip newlines from cslb_other_changes

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 2 comments

#97 - Add support for reading directly from GCS to convert-output-to-tsv script

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 1 comment

#96 - Remove all zip code fields from transformation code and schema

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 1 comment

#93 - Remove codecov config

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#92 - Add flag to parse and truncate floating point decimals in numeric field values

Pull Request - State: closed - Opened by ThePletch over 4 years ago - 2 comments

#90 - Add okhttp logging interceptor

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#89 - Updating the RC variable name being pulled

Pull Request - State: closed - Opened by quazi-h over 4 years ago

#88 - Update RC variable being queried for stuffed toys

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#85 - Add DAP ENV transformation code

Pull Request - State: closed - Opened by quazi-h over 4 years ago - 1 comment

#84 - Fix ITs

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago - 1 comment

#83 - Upgrade to ingest-utils 2.1.6 to pull in latest scio

Pull Request - State: closed - Opened by aherbst-broad over 4 years ago

#82 - Add extraction code to pull environment data

Pull Request - State: closed - Opened by quazi-h over 4 years ago

#80 - Add environment data schema

Pull Request - State: closed - Opened by quazi-h over 4 years ago

#77 - [DSPDC-1331] Implement DAP pack filtering

Pull Request - State: closed - Opened by aherbst-broad almost 5 years ago

#76 - Shift to new ingest-utils json parsing method

Pull Request - State: closed - Opened by aherbst-broad almost 5 years ago - 1 comment

#75 - Update PULL_REQUEST_TEMPLATE.md

Pull Request - State: closed - Opened by aherbst-broad almost 5 years ago - 1 comment

#74 - Add codepath for CSLB conversion to TSV

Pull Request - State: closed - Opened by aherbst-broad almost 5 years ago

#73 - Add pull request template

Pull Request - State: closed - Opened by aherbst-broad almost 5 years ago - 1 comment