Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / databio/bedshift issues and pull requests
#50 - bedshift is using an outdated pandas API
Issue -
State: open - Opened by nleroy917 over 1 year ago
#50 - bedshift is using an outdated pandas API
Issue -
State: open - Opened by nleroy917 over 1 year ago
#49 - Bedshift seems to produce invalid regions
Issue -
State: open - Opened by nleroy917 over 1 year ago
- 1 comment
#49 - Bedshift seems to produce invalid regions
Issue -
State: open - Opened by nleroy917 over 1 year ago
- 1 comment
#48 - Release 1.1.1 -- Fix documentation
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#48 - Release 1.1.1 -- Fix documentation
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#47 - add cython for pyranges?
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#47 - add cython for pyranges?
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#46 - master to dev
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#46 - master to dev
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#45 - implemented seed for reproducibility
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#45 - implemented seed for reproducibility
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#44 - added seed and included last commit on master
Pull Request -
State: closed - Opened by berkuva over 3 years ago
- 3 comments
#44 - added seed and included last commit on master
Pull Request -
State: closed - Opened by berkuva over 3 years ago
- 3 comments
#43 - Version 1.1.0
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
- 5 comments
#43 - Version 1.1.0
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
- 5 comments
#42 - Simple output
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#42 - Simple output
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#41 - Name of replicate files
Issue -
State: closed - Opened by nsheff over 3 years ago
- 1 comment
#41 - Name of replicate files
Issue -
State: closed - Opened by nsheff over 3 years ago
- 1 comment
#40 - displayed outputfiles are incorrect with repetitions
Issue -
State: closed - Opened by nsheff over 3 years ago
- 1 comment
#40 - displayed outputfiles are incorrect with repetitions
Issue -
State: closed - Opened by nsheff over 3 years ago
- 1 comment
#39 - fix shift_from_file and drop_from_file
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#39 - fix shift_from_file and drop_from_file
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#38 - Code cleanup
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#38 - Code cleanup
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#37 - fix bugs in shift_from_file and drop_from_file
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#37 - fix bugs in shift_from_file and drop_from_file
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#36 - Shift from file and Drop from file logic
Issue -
State: closed - Opened by aaron-gu over 3 years ago
Labels: bug
#36 - Shift from file and Drop from file logic
Issue -
State: closed - Opened by aaron-gu over 3 years ago
Labels: bug
#35 - Fix reading BED file and deleting header row.
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#35 - Fix reading BED file and deleting header row.
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#34 - Systematize change notification
Issue -
State: closed - Opened by nsheff over 3 years ago
#34 - Systematize change notification
Issue -
State: closed - Opened by nsheff over 3 years ago
#33 - apply black linter
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#33 - apply black linter
Pull Request -
State: closed - Opened by nsheff over 3 years ago
#32 - Passing list-likes to .loc or [] with any missing labels is no longer supported.
Issue -
State: closed - Opened by nsheff over 3 years ago
- 6 comments
#32 - Passing list-likes to .loc or [] with any missing labels is no longer supported.
Issue -
State: closed - Opened by nsheff over 3 years ago
- 6 comments
#31 - make required folders
Issue -
State: closed - Opened by nsheff over 3 years ago
- 2 comments
#31 - make required folders
Issue -
State: closed - Opened by nsheff over 3 years ago
- 2 comments
#30 - Docs
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#30 - Docs
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#29 - Testing
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#29 - Testing
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#28 - Code cleanup
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#28 - Code cleanup
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#27 - fix #26
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#27 - fix #26
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#26 - Addfile bug
Issue -
State: closed - Opened by aaron-gu over 3 years ago
- 5 comments
Labels: bug
#26 - Addfile bug
Issue -
State: closed - Opened by aaron-gu over 3 years ago
- 5 comments
Labels: bug
#25 - add valid regions
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
- 1 comment
#25 - add valid regions
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
- 1 comment
#24 - included shift_from_file
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#24 - included shift_from_file
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#23 - Add from valid regions
Issue -
State: closed - Opened by aaron-gu over 3 years ago
Labels: enhancement
#23 - Add from valid regions
Issue -
State: closed - Opened by aaron-gu over 3 years ago
Labels: enhancement
#22 - Reported regions changed are inaccurate if regions are outside chrom sizes
Issue -
State: closed - Opened by nsheff over 3 years ago
- 1 comment
Labels: bug
#22 - Reported regions changed are inaccurate if regions are outside chrom sizes
Issue -
State: closed - Opened by nsheff over 3 years ago
- 1 comment
Labels: bug
#21 - size of test file
Issue -
State: closed - Opened by nsheff over 3 years ago
- 2 comments
Labels: bug, enhancement
#21 - size of test file
Issue -
State: closed - Opened by nsheff over 3 years ago
- 2 comments
Labels: bug, enhancement
#20 - Move chrom_lengths
Issue -
State: closed - Opened by nsheff over 3 years ago
Labels: enhancement
#20 - Move chrom_lengths
Issue -
State: closed - Opened by nsheff over 3 years ago
Labels: enhancement
#19 - bedshift can't handle numeric chroms
Issue -
State: closed - Opened by nsheff over 3 years ago
Labels: bug
#19 - bedshift can't handle numeric chroms
Issue -
State: closed - Opened by nsheff over 3 years ago
Labels: bug
#18 - show default output file when not specified
Issue -
State: closed - Opened by nsheff over 3 years ago
- 1 comment
Labels: bug
#18 - show default output file when not specified
Issue -
State: closed - Opened by nsheff over 3 years ago
- 1 comment
Labels: bug
#17 - drop_from_file and yaml_config for bedshift and unittests
Pull Request -
State: closed - Opened by berkuva over 3 years ago
- 3 comments
#17 - drop_from_file and yaml_config for bedshift and unittests
Pull Request -
State: closed - Opened by berkuva over 3 years ago
- 3 comments
#16 - drop_from_file, yaml, other small fixes
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#16 - drop_from_file, yaml, other small fixes
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#15 - add drop_from_file and yaml unittests
Pull Request -
State: closed - Opened by berkuva over 3 years ago
- 1 comment
#15 - add drop_from_file and yaml unittests
Pull Request -
State: closed - Opened by berkuva over 3 years ago
- 1 comment
#14 - drop_from_file and yaml_config
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#14 - drop_from_file and yaml_config
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#13 - fix #10; add selects chromosome proportional to chromosome lengths
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
- 5 comments
#13 - fix #10; add selects chromosome proportional to chromosome lengths
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
- 5 comments
#12 - Random seed
Issue -
State: closed - Opened by aaron-gu over 3 years ago
- 1 comment
Labels: enhancement
#12 - Random seed
Issue -
State: closed - Opened by aaron-gu over 3 years ago
- 1 comment
Labels: enhancement
#11 - Shift is too slow
Issue -
State: open - Opened by aaron-gu over 3 years ago
- 2 comments
Labels: enhancement
#11 - Shift is too slow
Issue -
State: open - Opened by aaron-gu over 3 years ago
- 2 comments
Labels: enhancement
#10 - Add does not add proportionally to each chromosome
Issue -
State: closed - Opened by aaron-gu over 3 years ago
Labels: bug
#9 - Add yaml feature and drop_from_file
Pull Request -
State: closed - Opened by berkuva over 3 years ago
#8 - add unittests
Pull Request -
State: closed - Opened by aaron-gu over 3 years ago
#7 - Documentation
Pull Request -
State: closed - Opened by aaron-gu over 4 years ago
#6 - fix #5 changed regions reporting bug
Pull Request -
State: closed - Opened by aaron-gu over 4 years ago
#5 - bug in calculation of regions changed?
Issue -
State: closed - Opened by nsheff over 4 years ago
- 6 comments
Labels: bug
#4 - Chromosome sizes file
Pull Request -
State: closed - Opened by aaron-gu over 4 years ago
- 9 comments
#3 - Write doc guides
Issue -
State: closed - Opened by aaron-gu over 4 years ago
- 6 comments
Labels: documentation, help wanted
#2 - Refgenie integration
Issue -
State: closed - Opened by aaron-gu over 4 years ago
- 6 comments
#1 - Performance improvement
Issue -
State: open - Opened by aaron-gu almost 5 years ago
- 2 comments
Labels: enhancement