Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / darwin-eu/CodelistGenerator issues and pull requests

#119 - make sure getDrugIngredients returns integers

Issue - State: closed - Opened by edward-burn 8 months ago - 1 comment

#118 - omopgenerics support

Pull Request - State: closed - Opened by edward-burn 8 months ago

#117 - Find orphan codes returs an error

Issue - State: closed - Opened by albertpratsu 8 months ago - 1 comment

#116 - achillesCodeUse to return empty dataframe with same columns

Issue - State: closed - Opened by albertpratsu 8 months ago - 2 comments

#115 - including examples and returns

Pull Request - State: closed - Opened by xihang-chen 8 months ago

#114 - make sure all exported functions have examples

Issue - State: closed - Opened by edward-burn 8 months ago

#113 - Add gh link to DESCRIPTION

Pull Request - State: closed - Opened by olivroy 8 months ago - 1 comment

#112 - remove arrow dependency

Pull Request - State: closed - Opened by catalamarti 9 months ago

#111 - codelist diagnostics

Pull Request - State: closed - Opened by edward-burn 9 months ago

#110 - Achilles code use

Pull Request - State: closed - Opened by edward-burn 10 months ago

#108 - Missing Function Explanation

Issue - State: closed - Opened by PRijnbeek 10 months ago - 1 comment

#107 - ingredient count plus readme

Pull Request - State: closed - Opened by edward-burn 10 months ago

#106 - get drug ingredient descendants without combination concepts ids

Issue - State: closed - Opened by tiozab 10 months ago - 3 comments

#105 - fix for empty edge case

Pull Request - State: closed - Opened by edward-burn 11 months ago

#104 - support device concepts in summarise code use

Pull Request - State: closed - Opened by edward-burn 11 months ago

#103 - Codes from cohort - arrow or local

Issue - State: open - Opened by edward-burn 11 months ago
Labels: enhancement

#102 - Include source codes when summarising code use

Issue - State: closed - Opened by edward-burn 12 months ago - 1 comment

#101 - Sort the codelist alphabetically when read with codesFromConceptSet or codesFromCohort

Issue - State: closed - Opened by catalamarti 12 months ago - 1 comment
Labels: enhancement

#100 - various updates for v2.0

Pull Request - State: closed - Opened by edward-burn 12 months ago

#99 - update to duckdb v0.9

Issue - State: open - Opened by edward-burn about 1 year ago

#98 - tidywords UTF-8 error

Issue - State: closed - Opened by albertpratsu about 1 year ago - 2 comments

#97 - Changes to CDM Connector may have broken connecting to a CDM from files

Issue - State: open - Opened by albertpratsu about 1 year ago - 2 comments

#96 - fix for capr json

Pull Request - State: closed - Opened by edward-burn about 1 year ago

#95 - v1.7.0

Pull Request - State: closed - Opened by edward-burn about 1 year ago

#94 - updated_dependencies

Pull Request - State: closed - Opened by edward-burn about 1 year ago

#93 - add codesFromCohort function

Pull Request - State: closed - Opened by catalamarti about 1 year ago

#92 - have addRoute as a new argument

Issue - State: open - Opened by tiozab about 1 year ago - 1 comment
Labels: enhancement

#91 - error to compute the ATC codes

Issue - State: closed - Opened by catalamarti about 1 year ago - 1 comment

#90 - NA name of concepts in summariseCodeUse

Issue - State: closed - Opened by albertpratsu about 1 year ago - 1 comment

#89 - codesFromConceptSet

Pull Request - State: closed - Opened by edward-burn about 1 year ago

#88 - Update readConcepts.R

Pull Request - State: closed - Opened by catalamarti about 1 year ago - 1 comment

#87 - remove data frame checks

Pull Request - State: closed - Opened by edward-burn about 1 year ago

#86 - additional os

Pull Request - State: closed - Opened by edward-burn about 1 year ago

#85 - cranfix

Pull Request - State: closed - Opened by ablack3 about 1 year ago - 1 comment

#84 - Add function to export vocab tables

Issue - State: open - Opened by edward-burn about 1 year ago

#83 - Add ICD10 codes as data in the package

Issue - State: open - Opened by ilovemane over 1 year ago

#82 - icd_to_snomed

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#81 - AI assisted search strategy

Issue - State: closed - Opened by edward-burn over 1 year ago

#80 - v1.5

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#79 - remove cdm_tables

Pull Request - State: closed - Opened by ablack3 over 1 year ago

#78 - Breaking change in CDMConnector v1.0

Issue - State: closed - Opened by ablack3 over 1 year ago - 1 comment

#77 - Export codelist

Issue - State: closed - Opened by edward-burn over 1 year ago - 1 comment

#76 - Representing a codelist

Issue - State: closed - Opened by edward-burn over 1 year ago - 1 comment

#75 - codelist and codelistSet

Issue - State: closed - Opened by edward-burn over 1 year ago - 1 comment

#74 - move functions from DrugUtilisation

Pull Request - State: closed - Opened by catalamarti over 1 year ago

#73 - v1.4.0

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#72 - v1.3

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#71 - v1.2

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#70 - v1.1.0

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#69 - Consider merging searchInSynonyms and searchViaSynonyms

Issue - State: open - Opened by edward-burn over 1 year ago - 1 comment
Labels: question

#68 - includeSequela option

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#67 - document compareCodelists

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#66 - exact match option

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#65 - "restrict on dose form" in vignette

Issue - State: closed - Opened by tiozab over 1 year ago - 2 comments
Labels: documentation

#64 - medicine not working

Issue - State: closed - Opened by tiozab over 1 year ago - 5 comments
Labels: bug

#63 - tiny words

Issue - State: closed - Opened by tiozab over 1 year ago - 1 comment
Labels: enhancement

#62 - comparing searches

Issue - State: closed - Opened by tiozab over 1 year ago - 5 comments
Labels: documentation

#61 - vignette synonyms

Issue - State: closed - Opened by tiozab over 1 year ago - 2 comments
Labels: question

#60 - Have option to include/exclude sequelae

Issue - State: closed - Opened by catalamarti over 1 year ago - 4 comments
Labels: enhancement

#59 - Do we want to add optimization function?

Issue - State: closed - Opened by catalamarti over 1 year ago - 3 comments
Labels: question

#58 - Filter by fixed combination of ingredients

Issue - State: open - Opened by catalamarti over 1 year ago - 3 comments
Labels: enhancement

#57 - Add number of ingredients as filter search strategy

Issue - State: closed - Opened by catalamarti over 1 year ago - 1 comment
Labels: enhancement

#56 - Create a junk list

Issue - State: closed - Opened by catalamarti over 1 year ago - 3 comments
Labels: enhancement

#55 - Search synonyms via source codes

Issue - State: closed - Opened by catalamarti over 1 year ago - 1 comment
Labels: question

#54 - have an exact match

Issue - State: closed - Opened by tiozab over 1 year ago - 2 comments
Labels: enhancement

#53 - library(kableExtra) needs installation first

Issue - State: closed - Opened by tiozab over 1 year ago - 2 comments

#52 - Verion 1.0

Pull Request - State: closed - Opened by edward-burn over 1 year ago

#51 - Code counts

Issue - State: closed - Opened by edward-burn over 1 year ago - 1 comment
Labels: enhancement

#50 - Drug Codelist generator features

Issue - State: closed - Opened by albertpratsu over 1 year ago - 11 comments
Labels: enhancement

#49 - Map from codelist using a non-standard vocabulary to a standard vocabulary

Issue - State: closed - Opened by edward-burn almost 2 years ago - 3 comments
Labels: enhancement

#48 - Add benchmark function

Issue - State: closed - Opened by edward-burn almost 2 years ago
Labels: enhancement

#47 - Addition of a codelist suggestions feature

Issue - State: closed - Opened by albertpratsu almost 2 years ago - 2 comments
Labels: enhancement

#46 - Submit to CRAN

Issue - State: closed - Opened by ablack3 almost 2 years ago - 1 comment

#45 - Vignette on benchmaking

Issue - State: closed - Opened by edward-burn almost 2 years ago

#44 - Add a function to create a simple cohort

Issue - State: closed - Opened by catalamarti almost 2 years ago - 2 comments

#43 - add information from drug_strength table

Pull Request - State: closed - Opened by Xintong-Li-ZnCu almost 2 years ago - 4 comments

#42 - vignette typo fixed

Pull Request - State: closed - Opened by Xintong-Li-ZnCu almost 2 years ago

#41 - Adding drug strength info for drug concepts

Issue - State: closed - Opened by edward-burn almost 2 years ago

#40 - Export json file

Issue - State: closed - Opened by catalamarti almost 2 years ago - 9 comments

#39 - check needed tables

Issue - State: closed - Opened by catalamarti almost 2 years ago - 1 comment
Labels: enhancement

#38 - CodelistGenerator - incorrect syntax for getCandidateCodes argument for vignette section03

Issue - State: closed - Opened by daniellenewby almost 2 years ago - 1 comment
Labels: bug

#37 - Cdm connector

Pull Request - State: closed - Opened by edward-burn about 2 years ago

#36 - Use CDMConnector to manage database connections

Issue - State: closed - Opened by edward-burn about 2 years ago

#35 - Clarification on synonym search

Issue - State: closed - Opened by edward-burn about 2 years ago - 7 comments

#34 - CodelistGenerator Code Review

Issue - State: closed - Opened by ablack3 about 2 years ago - 1 comment

#33 - Rename functions for consistent naming conventions

Issue - State: closed - Opened by ablack3 about 2 years ago - 3 comments

#31 - Suggested edits from code review

Pull Request - State: closed - Opened by ablack3 about 2 years ago - 1 comment

#30 - Add column to getCandidateCodes() indicating how the code was found

Issue - State: closed - Opened by edward-burn about 2 years ago - 1 comment

#27 - get_candidate_codes with search_synonyms = TRUE giving unrelated concepts

Issue - State: closed - Opened by daniellenewby about 2 years ago - 4 comments
Labels: question

#26 - Add conceptClassId option

Issue - State: closed - Opened by edward-burn about 2 years ago - 1 comment
Labels: enhancement

#25 - show mappings function source vocab input

Issue - State: closed - Opened by daniellenewby about 2 years ago - 2 comments

#24 - Evaluate use of Andromeda

Issue - State: closed - Opened by edward-burn over 2 years ago - 1 comment
Labels: question

#23 - kable in readme needs to have library specified

Issue - State: closed - Opened by rossdwilliams over 2 years ago - 2 comments
Labels: bug

#22 - Add explain function

Issue - State: closed - Opened by edward-burn over 2 years ago - 1 comment
Labels: enhancement

#20 - Update compare_codelists.R

Pull Request - State: closed - Opened by ilovemane over 2 years ago

#19 - compare_codelists() function

Issue - State: closed - Opened by edward-burn over 2 years ago - 1 comment
Labels: good first issue

#18 - Add cost and ignore case for fuzzy matching

Pull Request - State: closed - Opened by MimiYuchenGuo over 2 years ago - 1 comment

#17 - Failing test for fuzzy search

Issue - State: closed - Opened by edward-burn over 2 years ago - 1 comment