Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / darwin-eu/CodelistGenerator issues and pull requests

#219 - merge main

Pull Request - State: closed - Opened by edward-burn 7 days ago

#218 - cran v3.2.0

Pull Request - State: open - Opened by edward-burn 7 days ago

#217 - merge main

Pull Request - State: closed - Opened by edward-burn 7 days ago

#216 - Update tables

Pull Request - State: closed - Opened by nmercadeb 7 days ago

#215 - Update summariseAchillesCodeUse.R

Pull Request - State: closed - Opened by edward-burn 7 days ago

#214 - add Nuria as aut/ctb

Issue - State: open - Opened by catalamarti 8 days ago

#213 - helper functions

Pull Request - State: closed - Opened by xihang-chen 27 days ago

#212 - Error in `auto_copy()`: when searchInSynonyms is FALSE

Issue - State: open - Opened by zcuccu about 2 months ago

#211 - remove magrittr dependency

Issue - State: open - Opened by edward-burn 2 months ago

#210 - move RJSONIO to suggests

Issue - State: open - Opened by edward-burn 2 months ago

#209 - Running into limitations with very large concept sets

Issue - State: open - Opened by ablack3 2 months ago - 1 comment

#207 - tracking codelist attrition

Issue - State: open - Opened by edward-burn 3 months ago

#206 - Error when using summariseOrphanCodes() function

Issue - State: closed - Opened by xihang-chen 3 months ago

#205 - Output of codesFromConceptSet

Issue - State: closed - Opened by catalamarti 3 months ago - 2 comments

#204 - Return

Pull Request - State: closed - Opened by edward-burn 3 months ago

#203 - 3.1.0

Pull Request - State: closed - Opened by edward-burn 3 months ago

#202 - stratifyByConcept

Pull Request - State: closed - Opened by edward-burn 3 months ago

#201 - categories all as snake case

Pull Request - State: closed - Opened by edward-burn 3 months ago

#199 - type argument

Pull Request - State: closed - Opened by edward-burn 3 months ago

#198 - doseUnit argument

Pull Request - State: closed - Opened by edward-burn 3 months ago

#197 - Dose unit

Pull Request - State: closed - Opened by edward-burn 3 months ago

#196 - add type argument throughout

Issue - State: closed - Opened by edward-burn 3 months ago

#195 - Cse

Pull Request - State: closed - Opened by edward-burn 3 months ago

#194 - use concept_recommended from phoebe when available

Pull Request - State: closed - Opened by edward-burn 3 months ago

#193 - getDrugIngredientCodes - all codes returned should be standard

Issue - State: closed - Opened by edward-burn 3 months ago - 1 comment

#192 - merge main

Pull Request - State: closed - Opened by edward-burn 3 months ago

#191 - orphan_domains

Pull Request - State: closed - Opened by edward-burn 3 months ago

#190 - Stratify keep original

Pull Request - State: closed - Opened by edward-burn 3 months ago - 1 comment

#189 - Should subset/stratify functions have an option to keep the original codelist?

Issue - State: closed - Opened by catalamarti 3 months ago - 1 comment
Labels: enhancement

#188 - route categories as snakecase

Pull Request - State: closed - Opened by edward-burn 3 months ago

#187 - add stratifyByRouteCategory

Pull Request - State: closed - Opened by edward-burn 3 months ago

#186 - add subsetToCodesInUse, deprecate restrictToCodesInUse

Pull Request - State: closed - Opened by edward-burn 3 months ago

#185 - fix action

Pull Request - State: closed - Opened by edward-burn 3 months ago

#184 - Route category in get codes

Pull Request - State: closed - Opened by edward-burn 3 months ago

#183 - web references

Pull Request - State: closed - Opened by edward-burn 3 months ago

#182 - remove experimental badge from tables

Pull Request - State: closed - Opened by edward-burn 3 months ago

#181 - start subset on route category

Pull Request - State: closed - Opened by edward-burn 3 months ago

#180 - subsetToCodesInUse

Issue - State: closed - Opened by edward-burn 3 months ago

#179 - subsetOnRouteCategory

Issue - State: closed - Opened by edward-burn 3 months ago

#178 - subsetOnRoute

Issue - State: closed - Opened by edward-burn 3 months ago

#177 - subsetOnDoseForm

Issue - State: closed - Opened by edward-burn 3 months ago

#176 - subsetOnDoseUnit

Issue - State: closed - Opened by edward-burn 3 months ago - 1 comment

#175 - doseUnit option in drug codelist functions

Issue - State: closed - Opened by edward-burn 3 months ago

#173 - getDoseUnit(cdm)

Issue - State: closed - Opened by edward-burn 3 months ago

#172 - additional drug arguments

Pull Request - State: closed - Opened by edward-burn 3 months ago

#171 - make sure results are from specified domain

Pull Request - State: closed - Opened by edward-burn 3 months ago

#170 - simplify and speed up orphan concepts

Pull Request - State: closed - Opened by edward-burn 3 months ago

#169 - achilles codes in use and various docs

Pull Request - State: closed - Opened by edward-burn 3 months ago

#168 - restrictToCodesInUse

Issue - State: closed - Opened by edward-burn 3 months ago

#167 - getRoutes()

Issue - State: closed - Opened by ilovemane 3 months ago

#166 - export route data

Pull Request - State: closed - Opened by ilovemane 3 months ago

#165 - Have route as internal data file and export

Issue - State: closed - Opened by ilovemane 3 months ago

#164 - no leftover tables

Pull Request - State: closed - Opened by edward-burn 3 months ago

#163 - getDrugIngredientCodes result in name with curly bracket "{"

Issue - State: closed - Opened by MimiYuchenGuo 3 months ago - 1 comment

#160 - summariseOrphanCodes() error with three codes

Issue - State: closed - Opened by xihang-chen 4 months ago - 1 comment

#159 - exclude a symbol in getCandidateCodes()

Issue - State: open - Opened by Xintong-Li-ZnCu 4 months ago

#158 - Helper function for icd names

Issue - State: closed - Opened by edward-burn 4 months ago - 1 comment

#157 - Helper function for atc names

Issue - State: closed - Opened by edward-burn 4 months ago

#156 - Helper function for ingredient names

Issue - State: closed - Opened by edward-burn 4 months ago

#155 - No duplicates

Pull Request - State: closed - Opened by xihang-chen 4 months ago - 3 comments

#154 - codelistToConceptSetExpression and conceptSetExpressionToCodelist

Issue - State: open - Opened by edward-burn 4 months ago
Labels: enhancement

#152 - Organise website references

Issue - State: closed - Opened by edward-burn 4 months ago
Labels: documentation

#151 - V3.0

Pull Request - State: closed - Opened by edward-burn 4 months ago

#150 - update gha

Pull Request - State: closed - Opened by edward-burn 4 months ago

#149 - Gh actions

Pull Request - State: closed - Opened by edward-burn 4 months ago

#148 - remove use of copy + true

Pull Request - State: closed - Opened by edward-burn 4 months ago

#147 - CodeCov not updated

Issue - State: open - Opened by PRijnbeek 4 months ago - 1 comment
Labels: documentation

#146 - function to summarise code use from phoebe csv

Issue - State: closed - Opened by nmercadeb 4 months ago - 7 comments
Labels: enhancement, question

#145 - question about summariseCodeUse()

Issue - State: closed - Opened by tiozab 4 months ago - 1 comment

#144 - add function to stratify a codelist

Issue - State: open - Opened by catalamarti 4 months ago - 2 comments
Labels: enhancement

#143 - check codesFrom* functions can handle int64

Issue - State: closed - Opened by edward-burn 5 months ago - 1 comment

#142 - remove copy = true in summarise code use

Issue - State: closed - Opened by dandedman 5 months ago

#141 - test is integer

Pull Request - State: closed - Opened by edward-burn 5 months ago

#140 - license statements and dbms tests

Pull Request - State: closed - Opened by edward-burn 5 months ago

#139 - duckdb and cdmconnector to suggests

Pull Request - State: closed - Opened by edward-burn 5 months ago

#138 - duckdb as suggests

Issue - State: closed - Opened by edward-burn 5 months ago - 1 comment

#137 - Not working with Databricks

Issue - State: open - Opened by laacdm 6 months ago - 2 comments
Labels: bug, question

#136 - Include MedDRA codelists

Issue - State: open - Opened by edward-burn 6 months ago - 2 comments
Labels: enhancement

#135 - #131

Pull Request - State: closed - Opened by xihang-chen 6 months ago

#134 - Check license statements

Issue - State: closed - Opened by PRijnbeek 7 months ago - 1 comment

#133 - Add a benchmarking function

Issue - State: open - Opened by edward-burn 7 months ago
Labels: enhancement

#132 - Add vignette on code counts

Issue - State: open - Opened by edward-burn 7 months ago
Labels: documentation

#131 - Add vignette on vocab based codelists

Issue - State: closed - Opened by edward-burn 7 months ago
Labels: documentation

#130 - entire search in same source

Pull Request - State: closed - Opened by edward-burn 7 months ago

#129 - getRelationshipId

Pull Request - State: closed - Opened by edward-burn 7 months ago

#128 - v2.2.3

Pull Request - State: closed - Opened by edward-burn 7 months ago

#127 - rename achillesCodeUse to summariseAchillesCodeUse

Issue - State: closed - Opened by edward-burn 7 months ago - 1 comment
Labels: enhancement

#126 - summarised result format

Pull Request - State: closed - Opened by edward-burn 7 months ago - 1 comment

#124 - v2.2.2

Pull Request - State: closed - Opened by edward-burn 7 months ago

#123 - incorporate concept relationships into orphan concepts

Issue - State: closed - Opened by edward-burn 7 months ago
Labels: enhancement

#122 - fix for multiple exclusion edge case

Pull Request - State: closed - Opened by edward-burn 8 months ago

#121 - Exclusion criteria not working correctly in getCandidateCodes

Issue - State: closed - Opened by daniellenewby 8 months ago - 1 comment

#120 - restrictToCodesInUse - behaviour when no codes being used for an item

Issue - State: closed - Opened by edward-burn 8 months ago
Labels: question