Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / daniel-liu-c0deb0t/umicollapse issues and pull requests

#32 - Remove redundant BAM file open in paired mode

Pull Request - State: open - Opened by siddharthab about 2 months ago - 3 comments

#31 - Very slow paired reads mode for transcriptome

Issue - State: open - Opened by siddharthab about 2 months ago - 1 comment

#29 - Error while running umicollapse

Issue - State: open - Opened by ancient-learner 3 months ago - 4 comments

#28 - Does this tool compute a consensus sequence?

Issue - State: closed - Opened by xiechangxiao 5 months ago - 4 comments

#27 - UMIcollapse check issue

Issue - State: closed - Opened by MardahlM 8 months ago - 12 comments

#26 - Support for pipes

Issue - State: open - Opened by gcambray over 1 year ago - 2 comments

#25 - bioconda for nf-core module

Issue - State: closed - Opened by CharlotteAnne over 1 year ago - 1 comment

#24 - Unable to access jarfile umicollapse.jar when running from another directory

Issue - State: closed - Opened by divibisan over 1 year ago - 1 comment

#23 - difference in deduplicated read numbers between BAM and FASTQ

Issue - State: closed - Opened by ajjeon over 1 year ago - 2 comments

#22 - Read duplication ?

Issue - State: open - Opened by karlkashofer almost 2 years ago - 1 comment

#21 - Please could you add version releases to the repo?

Issue - State: open - Opened by RachelDuffin almost 2 years ago - 1 comment

#20 - Number of unique reads fastq mode

Issue - State: open - Opened by lisagrigoreva almost 2 years ago - 3 comments

#19 - 2 input fastq files

Issue - State: open - Opened by a-pelissou about 2 years ago

#18 - Any chance of making a Conda package?

Issue - State: open - Opened by CharlotteAnne over 2 years ago - 9 comments

#17 - fastq processing

Issue - State: open - Opened by MardahlM over 2 years ago - 2 comments

#16 - parallelization ?

Issue - State: open - Opened by karlkashofer over 2 years ago - 1 comment

#15 - keep unmapped reads

Issue - State: open - Opened by karlkashofer over 2 years ago - 1 comment

#14 - Java heap space

Issue - State: open - Opened by karlkashofer over 2 years ago - 4 comments

#13 - feature request: option to look for UMI in sam tag

Issue - State: open - Opened by eboyden almost 3 years ago - 1 comment

#12 - Percentage parameter

Issue - State: open - Opened by gouinK almost 3 years ago - 1 comment

#11 - Interpreting log output

Issue - State: open - Opened by abracarambar over 3 years ago - 3 comments

#10 - can umicollapse be used for single umi and duplex umi data

Issue - State: open - Opened by worker000000 over 3 years ago - 16 comments

#9 - fastq file command

Issue - State: closed - Opened by abracarambar over 3 years ago - 16 comments

#8 - Problem executing umicollapse.jar

Issue - State: open - Opened by osvaldogc almost 4 years ago - 3 comments

#7 - Subtle annoyances with `umiDist` and `charSet`

Issue - State: open - Opened by Daniel-Liu-c0deb0t almost 4 years ago

#6 - fastq mode output

Issue - State: closed - Opened by coffeebond almost 4 years ago - 15 comments

#5 - Feature request: deduplication of read pairs

Issue - State: closed - Opened by ju-mu about 4 years ago - 5 comments

#4 - Memory issues

Issue - State: closed - Opened by ju-mu about 4 years ago - 9 comments

#3 - java.lang.NoClassDefFoundError: htsjdk/samtools/SamReaderFactory

Issue - State: closed - Opened by umasstr about 4 years ago - 1 comment

#2 - java.lang.StackOverflowError

Issue - State: closed - Opened by cagaser over 4 years ago - 6 comments

#1 - umi collapse fails with fastq input

Issue - State: closed - Opened by gfialk over 4 years ago - 6 comments
Labels: enhancement, help wanted