dan2097/opsin issues and pull requests

#214 - Inference Speed /Optimization Tips

Issue - State: open - Opened by sauhaardac over 1 year ago - 2 comments

#213 - Error when parsing "undecahectane".

Issue - State: closed - Opened by iclkevin over 1 year ago - 1 comment

#212 - wrong enantiomer when converting to CML

Issue - State: open - Opened by karpanGit over 1 year ago - 1 comment

#211 - Minor dep updates

Pull Request - State: closed - Opened by mjw99 over 1 year ago

#210 - Unable to generate name for one of the C5H isomers

Issue - State: closed - Opened by vthimmakondu over 1 year ago - 2 comments

#209 - Prefix form of lutidine, i.e. 2,3-lutidin-4-yl

Issue - State: closed - Opened by rogersayle over 1 year ago - 2 comments

#208 - Failed on trying the example file

Issue - State: closed - Opened by wenchangzhou-qtx over 1 year ago - 3 comments

#207 - Reverse OPSIN?

Issue - State: open - Opened by simonmb almost 2 years ago - 4 comments

#206 - Security Vulnerabilities in Apache Dependency Libraries (commons-net and commons-io)

Issue - State: closed - Opened by manuelschwarze almost 2 years ago - 2 comments

#205 - Various dep updates

Pull Request - State: closed - Opened by mjw99 almost 2 years ago

#204 - Bump woodstox-core from 6.3.0 to 6.4.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment

#203 - Bump woodstox-core from 6.3.0 to 6.4.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 2 comments
Labels: dependencies

#202 - (benzene-1,2-dicarboximido)methane

Issue - State: closed - Opened by rogersayle almost 2 years ago

#201 - Phthalhydrazide

Issue - State: closed - Opened by IngvarLa almost 2 years ago - 2 comments

#200 - Enhancement to returned data

Issue - State: open - Opened by stuchalk about 2 years ago

#199 - Enhancement to the success HTML page

Issue - State: closed - Opened by stuchalk about 2 years ago - 1 comment

#198 - Improvement to API

Issue - State: closed - Opened by stuchalk about 2 years ago - 2 comments

#197 - Optional N-locant for isocyanate

Issue - State: open - Opened by IngvarLa about 2 years ago

#196 - Various dep upgrades

Pull Request - State: closed - Opened by mjw99 about 2 years ago

#195 - Updated Log4J2

Pull Request - State: closed - Opened by Mailaender about 2 years ago

#194 - CVE-2021-44832

Issue - State: closed - Opened by Mailaender about 2 years ago - 7 comments

#193 - Placement of Cl in L-Asparaginium chloride monohydrate

Issue - State: closed - Opened by vaitkus about 2 years ago - 2 comments

#192 - Add test case for radical attachment points in CXSMILES.

Pull Request - State: closed - Opened by johnmay about 2 years ago

#191 - t-Butyl N-(1-oxo-4-nitroisoindolin-2-yl)-L-glutamine interpreted different from ChemDraw (and what the authors intended)

Issue - State: open - Opened by IngvarLa about 2 years ago - 2 comments

#190 - StatusLogger messages printed to console by opsin-core

Issue - State: open - Opened by jasondbiggs over 2 years ago - 1 comment

#189 - OPSIN website not funcitonal

Issue - State: closed - Opened by stuchalk over 2 years ago - 2 comments

#188 - How to get substituent parsing result

Issue - State: closed - Opened by colormeblue1013 over 2 years ago - 2 comments

#187 - Unexpected H-count from lamda nomenclature

Issue - State: closed - Opened by IngvarLa over 2 years ago - 2 comments

#186 - Correct IUPAC name for one of the C11H8 carbenes

Issue - State: closed - Opened by vthimmakondu over 2 years ago - 4 comments

#185 - Minor dep updates

Pull Request - State: closed - Opened by mjw99 over 2 years ago

#184 - Various dep updates

Pull Request - State: closed - Opened by mjw99 over 2 years ago - 1 comment

#183 - n-amyl not recognized, though amyl and n-pentyl are

Issue - State: closed - Opened by FiroStefani over 2 years ago - 2 comments

#182 - "pentdec should not have been lexed as two tokens" error

Issue - State: open - Opened by rogersayle over 2 years ago - 1 comment

#181 - Update dk.brics.automaton to 1.12-4

Pull Request - State: closed - Opened by mjw99 over 2 years ago

#180 - Bump log4j-core from 2.17.0 to 2.17.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#179 - Bump log4j-api from 2.17.0 to 2.17.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#178 - Minor deps updates

Pull Request - State: closed - Opened by mjw99 almost 3 years ago

#177 - Bump log4j-core from 2.16.0 to 2.17.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#176 - Bump log4j-api from 2.16.0 to 2.17.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#175 - Bump log4j-api from 2.15.0 to 2.16.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#174 - Log4J Security Vulnerability CVE-2021-44228

Issue - State: closed - Opened by manuelschwarze almost 3 years ago - 10 comments

#173 - oss-parent is deprecated

Issue - State: closed - Opened by dan2097 almost 3 years ago
Labels: enhancement

#172 - Various minor dep updates

Pull Request - State: closed - Opened by mjw99 almost 3 years ago - 1 comment

#171 - Bump log4j-core from 2.14.1 to 2.15.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#170 - Bump log4j-api from 2.14.1 to 2.15.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#169 - Spelling error on front page

Issue - State: closed - Opened by stuchalk almost 3 years ago - 1 comment

#168 - Small molecule polymer not processing

Issue - State: closed - Opened by stuchalk almost 3 years ago - 2 comments

#167 - Substituted thiooxime misinterpreted

Issue - State: closed - Opened by dan2097 almost 3 years ago
Labels: bug

#166 - Some constructs chemists tend to get wrong

Issue - State: open - Opened by IngvarLa almost 3 years ago - 1 comment

#165 - Improved interpretation (and/or warning for) bis(2-hydroxyethyl)oleylamine

Issue - State: closed - Opened by rogersayle almost 3 years ago - 1 comment

#164 - A space difference will create two different structure

Issue - State: closed - Opened by leonqli almost 3 years ago - 2 comments

#163 - Nitride unparsable

Issue - State: open - Opened by lordlouckster almost 3 years ago

#162 - Minor dep updates

Pull Request - State: closed - Opened by mjw99 almost 3 years ago

#161 - parsing error

Issue - State: closed - Opened by thegodone about 3 years ago - 1 comment

#160 - Migrate to JUnit 5

Pull Request - State: closed - Opened by mjw99 about 3 years ago - 1 comment

#159 - Various deps updates

Pull Request - State: closed - Opened by mjw99 over 3 years ago - 1 comment

#159 - Various deps updates

Pull Request - State: closed - Opened by mjw99 over 3 years ago - 1 comment

#158 - Set scope for testing deps

Pull Request - State: closed - Opened by mjw99 over 3 years ago

#157 - Use diamond operator

Pull Request - State: closed - Opened by mjw99 over 3 years ago

#156 - Consider switching to JAVA 8

Issue - State: closed - Opened by mjw99 over 3 years ago - 1 comment

#155 - Migrate from Apache log4j 1.2 to 2.14

Issue - State: closed - Opened by manuelschwarze over 3 years ago - 2 comments

#155 - Migrate from Apache log4j 1.2 to 2.14

Issue - State: closed - Opened by manuelschwarze over 3 years ago - 2 comments

#154 - Make use of Actions CI

Pull Request - State: closed - Opened by mjw99 over 3 years ago - 1 comment

#154 - Make use of Actions CI

Pull Request - State: closed - Opened by mjw99 over 3 years ago - 1 comment

#153 - Correctly bracket alkyldialkylsilylalkyl

Issue - State: closed - Opened by dan2097 over 3 years ago - 1 comment
Labels: bug

#152 - Handle more variants of lipid nomenclature, e.g. sn-glycero-3-phosphate

Issue - State: closed - Opened by rogersayle over 3 years ago - 2 comments

#152 - Handle more variants of lipid nomenclature, e.g. sn-glycero-3-phosphate

Issue - State: closed - Opened by rogersayle over 3 years ago - 2 comments

#151 - Improve handling of superfluous hyphens when implicit bracketting

Issue - State: open - Opened by dan2097 over 3 years ago
Labels: enhancement

#151 - Improve handling of superfluous hyphens when implicit bracketting

Issue - State: open - Opened by dan2097 over 3 years ago
Labels: enhancement

#151 - Improve handling of superfluous hyphens when implicit bracketting

Issue - State: open - Opened by dan2097 over 3 years ago
Labels: enhancement

#150 - Correct structure for ionic liquid cation?

Issue - State: closed - Opened by simonmb over 3 years ago - 6 comments

#149 - Bump commons-io from 2.6 to 2.7

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#149 - Bump commons-io from 2.6 to 2.7

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#148 - Deaza

Pull Request - State: closed - Opened by johnmay over 3 years ago - 4 comments

#147 - Allow "alanine nitrile" as a peptide suffix.

Pull Request - State: closed - Opened by johnmay over 3 years ago

#147 - Allow "alanine nitrile" as a peptide suffix.

Pull Request - State: closed - Opened by johnmay over 3 years ago

#146 - Mercury(I) salts return empirical rather than molecular formulas

Issue - State: open - Opened by jsonnenb over 3 years ago - 2 comments

#146 - Mercury(I) salts return empirical rather than molecular formulas

Issue - State: open - Opened by jsonnenb over 3 years ago - 2 comments

#146 - Mercury(I) salts return empirical rather than molecular formulas

Issue - State: open - Opened by jsonnenb over 3 years ago - 2 comments

#145 - Stereogrps2

Pull Request - State: closed - Opened by johnmay over 3 years ago - 9 comments

#145 - Stereogrps2

Pull Request - State: closed - Opened by johnmay over 3 years ago - 9 comments

#145 - Stereogrps2

Pull Request - State: closed - Opened by johnmay over 3 years ago - 9 comments

#144 - Potassium Osmate

Issue - State: open - Opened by paconius over 3 years ago - 2 comments
Labels: bug

#144 - Potassium Osmate

Issue - State: open - Opened by paconius over 3 years ago - 2 comments
Labels: bug

#143 - (tert-butoxy)carbohydrazide mistranslation

Issue - State: closed - Opened by paconius over 3 years ago - 2 comments

#143 - (tert-butoxy)carbohydrazide mistranslation

Issue - State: closed - Opened by paconius over 3 years ago - 2 comments

#143 - (tert-butoxy)carbohydrazide mistranslation

Issue - State: closed - Opened by paconius over 3 years ago - 2 comments

#142 - Nitrate salt incorrectly(?) connected to compound in opsin 2.5.0

Issue - State: open - Opened by greglandrum over 3 years ago - 1 comment
Labels: bug

#142 - Nitrate salt incorrectly(?) connected to compound in opsin 2.5.0

Issue - State: open - Opened by greglandrum over 3 years ago - 1 comment
Labels: bug

#142 - Nitrate salt incorrectly(?) connected to compound in opsin 2.5.0

Issue - State: open - Opened by greglandrum over 3 years ago - 1 comment
Labels: bug

GitHub / dan2097/opsin issues and pull requests