Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / dalmolingroup/euryale issues and pull requests

#29 - feat: Add kraken2 taxonomy option

Pull Request - State: closed - Opened by jvfe about 1 year ago

#28 - docs: Add diagram and logo

Pull Request - State: closed - Opened by jvfe about 1 year ago

#27 - refactor: Use names.dmp in kaiju2table

Pull Request - State: closed - Opened by jvfe about 1 year ago

#26 - refactor: Gzip DIAMOND outs

Pull Request - State: closed - Opened by jvfe about 1 year ago

#25 - Enable gzip compression for DIAMOND/annotate

Issue - State: closed - Opened by jvfe about 1 year ago

#24 - refactor: Make annotate run one-at-a-time

Pull Request - State: closed - Opened by jvfe about 1 year ago

#23 - refactor: Add option for prebuilt bowtie2 index

Pull Request - State: closed - Opened by jvfe about 1 year ago

#22 - refactor: Change diamond options

Pull Request - State: closed - Opened by jvfe about 1 year ago

#21 - feat: Add params to skip pipeline steps

Pull Request - State: closed - Opened by jvfe about 1 year ago

#20 - docs: Improve docs

Pull Request - State: closed - Opened by jvfe about 1 year ago

#19 - refactor: Upgrade base time requirements

Pull Request - State: closed - Opened by jvfe over 1 year ago

#18 - feat: Add save_dbs param to save diamond_db to output

Pull Request - State: closed - Opened by jvfe over 1 year ago

#17 - refactor: Update time labels

Pull Request - State: closed - Opened by jvfe over 1 year ago

#16 - refactor: Remove requirement for --genome param

Pull Request - State: closed - Opened by jvfe over 1 year ago

#15 - refactor: Increase memory for a few processes

Pull Request - State: closed - Opened by jvfe over 1 year ago

#14 - refactor: Update process labels for untar and gunzip

Pull Request - State: closed - Opened by jvfe over 1 year ago

#13 - refactor: Improve functional subworkflow

Pull Request - State: closed - Opened by jvfe over 1 year ago

#12 - refactor: Use assembly outputs downstream with 'assembly_based'

Pull Request - State: closed - Opened by jvfe over 1 year ago

#11 - refactor: Add correct host-read removal workflow

Pull Request - State: closed - Opened by jvfe over 1 year ago

#10 - docs: Update documentation

Pull Request - State: closed - Opened by jvfe over 1 year ago

#9 - feat: Add annotate

Pull Request - State: closed - Opened by jvfe over 1 year ago

#8 - feat: Add dictionary creation

Pull Request - State: closed - Opened by jvfe over 1 year ago

#7 - feat: Allow for pre-built diamond references

Pull Request - State: closed - Opened by jvfe over 1 year ago

#6 - feat: Add diamond modules

Pull Request - State: closed - Opened by jvfe over 1 year ago

#5 - feat: Add FastX Collapser

Pull Request - State: closed - Opened by jvfe over 1 year ago

#4 - feat: Add host read removal subwf

Pull Request - State: closed - Opened by jvfe over 1 year ago

#3 - feat: Add MEGAHIT assembly subwf

Pull Request - State: closed - Opened by jvfe over 1 year ago

#2 - ci: Add pipeline test run to CI

Pull Request - State: closed - Opened by jvfe over 1 year ago

#1 - Add Preprocessing subwf

Pull Request - State: closed - Opened by jvfe over 1 year ago