daler/gffutils issues and pull requests

#128 - Spaces in attributes field prevents create_db from adding parent relationships

Issue - State: closed - Opened by mglubber over 5 years ago - 5 comments
Labels: v0.11

#126 - Add link to repo on read the docs or pythonhosted

Issue - State: closed - Opened by innovate-invent over 5 years ago

#120 - a way of importing ABCs is deprecaited and will stop working in python 3.8

Issue - State: closed - Opened by elhossary almost 6 years ago - 2 comments

#119 - ID collision resolution broken

Issue - State: closed - Opened by innovate-invent almost 6 years ago - 8 comments

#118 - FeatureDB update() returns incorrect type

Issue - State: closed - Opened by innovate-invent almost 6 years ago

#114 - gffutils.FeatureDB.children missing children for non-exon featuretypes

Issue - State: closed - Opened by lee-van almost 6 years ago - 1 comment

#112 - Error in specific line(s): sqlite3.InterfaceError: Error binding parameter 11 - probably unsupported type.

Issue - State: closed - Opened by ieguinoa almost 6 years ago - 4 comments

#111 - create_introns() stalls on GRCz11 GFF

Issue - State: closed - Opened by mmattocks almost 6 years ago - 1 comment

#109 - [performance feature] You should create the DB in memory first, and use prepared SQL statements

Issue - State: closed - Opened by yurivict about 6 years ago - 8 comments

#103 - spliced sequence extraction

Issue - State: open - Opened by daler about 7 years ago - 2 comments
Labels: feature request

#91 - Tests fail on Debian Unstable

Issue - State: closed - Opened by mr-c almost 8 years ago - 2 comments

#90 - chr5 transcript inferred on chr4 feature

Issue - State: closed - Opened by olgabot almost 8 years ago - 5 comments

#89 - improve gffwriter

Issue - State: open - Opened by daler about 8 years ago - 1 comment
Labels: feature request

#84 - Insert features at a specific level without destroying structure?

Issue - State: closed - Opened by olgabot about 8 years ago - 2 comments

#74 - Add foreign keys to relations table

Pull Request - State: closed - Opened by arnikz over 8 years ago - 5 comments

#73 - Guarantee referential integrity of the generated SQLite db.

Issue - State: closed - Opened by arnikz over 8 years ago - 3 comments

#53 - Iterators

Pull Request - State: closed - Opened by daler almost 9 years ago

#52 - Port GFF to TBL script

Issue - State: closed - Opened by daler over 9 years ago - 10 comments

#18 - Generating DataTables from GFF database

Issue - State: closed - Opened by yarden over 11 years ago
Labels: feature request

#17 - Error handling for missing/empty/non-GFF files

Issue - State: closed - Opened by yarden over 11 years ago - 1 comment
Labels: feature request

#11 - UCSC convention: end_included=false

Issue - State: closed - Opened by alexpenson over 11 years ago - 2 comments
Labels: feature request

#4 - Dealing with 'hybrid' bedtools gff/bed files?

Issue - State: closed - Opened by yarden over 11 years ago - 2 comments
Labels: design

Ecosyste.ms: Issues

GitHub / daler/gffutils issues and pull requests