daducci/COMMIT issues and pull requests

#139 - [RELEASE] v2.3.0

Pull Request - State: closed - Opened by nightwnvol 2 days ago

#138 - Multithread

Issue - State: open - Opened by arnaudbore 10 days ago - 2 comments
Labels: help wanted

#137 - [RELEASE] v2.2.0

Pull Request - State: closed - Opened by fullbat 3 months ago

#136 - Release/v2.1.2

Pull Request - State: open - Opened by fullbat 3 months ago

#134 - Errors in COMMIT2 tutorial

Issue - State: closed - Opened by boazkalk 5 months ago - 5 comments
Labels: help wanted

#131 - [RELEASE] v2.1.0

Pull Request - State: closed - Opened by nightwnvol 6 months ago

#129 - [FIX] Fista update

Pull Request - State: closed - Opened by nightwnvol 7 months ago

#128 - [RELEASE] v2.0.2

Pull Request - State: closed - Opened by nightwnvol 7 months ago

#127 - [FIX] Operator is not recompiled when some parameters are changed

Pull Request - State: closed - Opened by daducci 8 months ago
Labels: bug

#126 - Operator is not recompiled when parameters change

Issue - State: closed - Opened by daducci 8 months ago
Labels: bug

#125 - [RELEASE] v2.0.1

Pull Request - State: closed - Opened by nightwnvol 9 months ago

#124 - Building operator A error: no EC compartments

Issue - State: closed - Opened by SebastienDam01 9 months ago - 4 comments
Labels: help wanted

#123 - [RELEASE] v2.0.0

Pull Request - State: closed - Opened by nightwnvol 10 months ago

#122 - v1.6.5

Pull Request - State: closed - Opened by nightwnvol over 1 year ago

#121 - "Inhomogeneous shape error" with Numpy version 1.24.0

Issue - State: closed - Opened by SiemondeLange over 1 year ago - 2 comments
Labels: bug

#120 - v1.6.4

Pull Request - State: closed - Opened by nightwnvol over 1 year ago

#119 - Index is out of bounds for axis 0 in iFOD2 algorithms.

Issue - State: closed - Opened by komabso over 1 year ago - 6 comments
Labels: help wanted

#118 - 1.6.3

Pull Request - State: closed - Opened by daducci over 1 year ago

#117 - Data loading: check for "bad voxels" (NaN or Inf values) when load and pre-process data

Pull Request - State: closed - Opened by nightwnvol over 1 year ago

#116 - Final Output from COMMIT2 Not Aligned

Issue - State: closed - Opened by RaviBot over 1 year ago - 9 comments
Labels: help wanted

#115 - trk2dictionary not working with spyder

Issue - State: closed - Opened by simchahal1127 almost 2 years ago - 2 comments
Labels: help wanted

#114 - Unlike yours, the number of tracks in my tck file decreased

Issue - State: closed - Opened by komabso almost 2 years ago - 2 comments

#113 - From what I see there is no difference between outputs of COMMIT1 and COMMIT2

Issue - State: closed - Opened by komabso about 2 years ago - 18 comments
Labels: help wanted

#112 - It takes too long to fit model.

Issue - State: closed - Opened by komabso about 2 years ago - 20 comments
Labels: help wanted

#111 - Fix affine when loading TCK tractograms

Pull Request - State: closed - Opened by daducci about 2 years ago
Labels: bug

#110 - COMMIT2 on QSIPrep/QSIRecon Outputs

Issue - State: closed - Opened by smeisler over 2 years ago - 14 comments
Labels: help wanted

#109 - [fix] tckedit command in Wiki is too long

Issue - State: closed - Opened by smeisler over 2 years ago - 3 comments
Labels: enhancement

#108 - Numpy version incompatability?

Issue - State: closed - Opened by smeisler over 2 years ago - 2 comments

#107 - Peaks file requirement for COMMIT2

Issue - State: closed - Opened by sidchop over 2 years ago - 3 comments

#106 - Save results format

Pull Request - State: closed - Opened by daducci over 2 years ago
Labels: enhancement

#105 - Improve precision of values stored in file `streamline_weights.txt`

Issue - State: closed - Opened by daducci over 2 years ago - 1 comment
Labels: enhancement

#104 - Improving blur functionality

Pull Request - State: closed - Opened by ilariagabusi over 2 years ago
Labels: enhancement

#103 - Extend get_coeffs to extract coefficients of original/preconditioned problem

Issue - State: closed - Opened by daducci about 3 years ago - 1 comment
Labels: enhancement

#102 - Mapping idxs of structureIC

Pull Request - State: closed - Opened by MarioOcampo about 3 years ago
Labels: bug

#101 - confidence_map from float64 to float32

Pull Request - State: closed - Opened by MarioOcampo about 3 years ago

#100 - Streamline weights in case of blur

Pull Request - State: closed - Opened by daducci about 3 years ago

#99 - Fix trk2dictionary affine bug for TCK tractograms

Pull Request - State: closed - Opened by MarioOcampo over 3 years ago - 3 comments

#98 - Add Tikhonov Regularization

Pull Request - State: open - Opened by ErickHernandezGutierrez over 3 years ago - 1 comment

#97 - How to obtain a file like demo01_fibers_connection.tck when the tractogram and the number of gray-matter ROIs are huge.

Issue - State: closed - Opened by zhanghuinf1980 over 3 years ago - 4 comments
Labels: help wanted

#96 - Verbose bool

Pull Request - State: closed - Opened by MarioOcampo over 3 years ago

#95 - see an error in trk2dictionary

Issue - State: closed - Opened by mohammadhadiaarabi over 3 years ago - 7 comments
Labels: help wanted

#94 - Improve progress bar in Jupyter notebook/labs

Issue - State: closed - Opened by daducci over 3 years ago - 1 comment
Labels: enhancement

#93 - Add integration with Travis CI

Issue - State: open - Opened by daducci over 3 years ago - 1 comment
Labels: enhancement

#92 - COMMIT2

Issue - State: closed - Opened by sarwart over 3 years ago - 8 comments
Labels: help wanted

#91 - Fix blur

Pull Request - State: closed - Opened by daducci over 3 years ago
Labels: bug, enhancement

#90 - Verbose parameter should be bool

Issue - State: closed - Opened by daducci over 3 years ago - 5 comments
Labels: enhancement

#89 - Add confidence map

Pull Request - State: closed - Opened by MarioOcampo over 3 years ago
Labels: enhancement

#88 - Store model parameters to results.pickle

Pull Request - State: closed - Opened by daducci over 3 years ago
Labels: enhancement

#87 - Fix build operator

Pull Request - State: closed - Opened by MarioOcampo over 3 years ago - 1 comment
Labels: bug

#86 - Check for invalid parameter values to the blur

Pull Request - State: closed - Opened by daducci over 3 years ago
Labels: bug

#85 - Fix bug in the blurring functionality (work in progress)

Pull Request - State: closed - Opened by daducci almost 4 years ago
Labels: bug, enhancement

#84 - Fix installation debugger

Pull Request - State: closed - Opened by MarioOcampo almost 4 years ago - 1 comment
Labels: bug

#83 - GPU Version

Pull Request - State: open - Opened by ErickHernandezGutierrez almost 4 years ago - 5 comments
Labels: enhancement

#82 - Mini fix build

Pull Request - State: closed - Opened by frheault about 4 years ago - 4 comments
Labels: bug, enhancement

#81 - Change logic to write xic.txt file

Pull Request - State: closed - Opened by daducci about 4 years ago - 3 comments
Labels: enhancement

#80 - Build operator in any folder

Pull Request - State: closed - Opened by frheault about 4 years ago

#79 - Improve debugger

Pull Request - State: closed - Opened by daducci about 4 years ago
Labels: enhancement

#78 - WIP - Improving setup and requirements

Pull Request - State: closed - Opened by frheault about 4 years ago

#77 - Add parameter 'min_fiber_len' in trk2dictionary

Pull Request - State: closed - Opened by daducci about 4 years ago
Labels: enhancement

#76 - Adding option to set ndirs=1 in the LUT

Pull Request - State: closed - Opened by ErickHernandezGutierrez over 4 years ago

#75 - Fiber extrusion

Pull Request - State: closed - Opened by fullbat over 4 years ago

#74 - Tck reader

Pull Request - State: closed - Opened by FrancescoGobbi over 4 years ago - 1 comment
Labels: enhancement

#73 - Fix proximal of L2 norm

Pull Request - State: closed - Opened by MarioOcampo over 4 years ago
Labels: bug

#72 - Fix EC and ISO selection for Omega functions

Pull Request - State: closed - Opened by MarioOcampo over 4 years ago
Labels: bug

#71 - Low Resolution LUT

Pull Request - State: closed - Opened by ErickHernandezGutierrez over 4 years ago - 2 comments
Labels: enhancement

#70 - Fiber extrusion

Pull Request - State: closed - Opened by fullbat over 4 years ago
Labels: enhancement

#69 - extrusion

Pull Request - State: closed - Opened by filippobaccaglini over 4 years ago

#68 - extrusion

Pull Request - State: closed - Opened by filippobaccaglini over 4 years ago

#67 - Updated version number to 1.2 in setup.py

Pull Request - State: closed - Opened by MarioOcampo almost 5 years ago

#66 - Bug with proximal operators

Pull Request - State: closed - Opened by daducci almost 5 years ago - 4 comments
Labels: bug

#65 - Revert "Revert "Compatibility with Python 3""

Pull Request - State: closed - Opened by daducci almost 5 years ago

#64 - Restored branch with python3 compatibility

Pull Request - State: closed - Opened by daducci almost 5 years ago

#63 - Revert "Compatibility with Python 3"

Pull Request - State: closed - Opened by daducci almost 5 years ago

#62 - Trk loading code should be updated to `nibabel.streamlines`

Issue - State: closed - Opened by jchoude almost 5 years ago - 2 comments

#61 - Commit is not compatible with Dipy 1.0

Issue - State: closed - Opened by jchoude almost 5 years ago - 10 comments
Labels: bug

#60 - Compatibility with Python 3

Pull Request - State: closed - Opened by daducci about 5 years ago
Labels: enhancement

#59 - Tck_reader

Pull Request - State: closed - Opened by FrancescoGobbi over 5 years ago - 4 comments

#58 - /usr/include/stdio.h issue

Issue - State: closed - Opened by mdesco over 5 years ago - 1 comment

#57 - Faster proxs and omegas

Pull Request - State: closed - Opened by daducci over 5 years ago - 2 comments
Labels: enhancement

#56 - Change of default starting point. From ones to zeros.

Pull Request - State: closed - Opened by MarioOcampo over 5 years ago - 1 comment
Labels: enhancement

#55 - Temporary workaround for issue #54

Pull Request - State: closed - Opened by daducci over 5 years ago
Labels: bug

#54 - Proximal Operator of group-Lasso penalty with L infinity norm

Issue - State: open - Opened by MarioOcampo over 5 years ago - 4 comments
Labels: bug

#53 - Wrong structureIC, if all groups have the same number of streamlines

Issue - State: closed - Opened by MarioOcampo over 5 years ago - 1 comment
Labels: bug, invalid

#52 - Bug on import commit

Issue - State: closed - Opened by gabknight about 6 years ago - 3 comments
Labels: bug

#51 - solution to issue #50

Pull Request - State: closed - Opened by matteofrigo about 6 years ago

#50 - new solvers need new outputs

Issue - State: closed - Opened by matteofrigo about 6 years ago

#49 - Fix segfault when using new regularization scheme

Pull Request - State: closed - Opened by daducci about 6 years ago
Labels: bug

#48 - outputs of CylinderZeppelinBall

Issue - State: closed - Opened by behnam12 about 6 years ago
Labels: help wanted

#47 - fix typo

Pull Request - State: closed - Opened by matteofrigo about 6 years ago

#46 - typo in auxiliar variable

Issue - State: closed - Opened by matteofrigo about 6 years ago

#45 - Crossing region_Optic chaisma

Issue - State: closed - Opened by behnam12 about 6 years ago - 6 comments
Labels: question

#44 - Optic chiasm data as input for COMMIT

Issue - State: closed - Opened by behnam12 over 6 years ago - 5 comments

#43 - A matrix in voxels containing crossing fibers

Issue - State: closed - Opened by behnam12 over 6 years ago - 2 comments
Labels: question

#42 - fix assignment of group norm in the regularisation term

Pull Request - State: closed - Opened by matteofrigo over 6 years ago - 1 comment

#41 - wrong group norm assignment

Issue - State: closed - Opened by matteofrigo over 6 years ago

#40 - backward compatibility of group structure

Issue - State: closed - Opened by matteofrigo over 6 years ago - 1 comment

#39 - probabilistic fiber tracking of FSL

Issue - State: closed - Opened by behnam12 over 6 years ago - 1 comment

#38 - fix bug in backward compatibility of group sparsity

Pull Request - State: closed - Opened by matteofrigo over 6 years ago - 3 comments

#37 - Weight of fibers as an output of COMMIT

Issue - State: closed - Opened by Maarkez over 6 years ago - 2 comments
Labels: enhancement

#36 - new solvers structure

Pull Request - State: closed - Opened by matteofrigo over 6 years ago - 2 comments

GitHub / daducci/COMMIT issues and pull requests