cytoscape/py4cytoscape issues and pull requests

#48 - Add Cytoscape-and-iGraph.ipynb+rst to doc

Pull Request - State: closed - Opened by kozo2 over 3 years ago

#47 - Remove !wget and use sandbox_url_to

Pull Request - State: closed - Opened by kozo2 over 3 years ago

#46 - Add Importing-data to the tutorial

Pull Request - State: closed - Opened by kozo2 over 3 years ago

#45 - create_network_from_igraph does not work for an igraph object

Issue - State: closed - Opened by kozo2 over 3 years ago - 2 comments
Labels: bug

#44 - Update docs for version 0.0.8

Pull Request - State: closed - Opened by kozo2 over 3 years ago

#43 - Reconcile igraph export with RCy3

Issue - State: closed - Opened by bdemchak over 3 years ago - 1 comment

#42 - Column names containing "/" fail on some calls

Issue - State: open - Opened by bdemchak over 3 years ago - 2 comments
Labels: bug

#41 - Issue with mapping node/edge names to SUIDs

Issue - State: closed - Opened by AlexanderPico over 3 years ago - 4 comments
Labels: bug, RCy3 Sync

#40 - Using basiCO to Run Reaction Kinetics Simulations on Py4cytoscape

Issue - State: closed - Opened by kyxhik over 3 years ago - 7 comments

#39 - Add subdomain param to CyNDEx functions

Issue - State: closed - Opened by AlexanderPico almost 4 years ago - 1 comment
Labels: RCy3 Sync

#38 - Add import_table_from_file to match import_network_from_file

Issue - State: closed - Opened by bdemchak almost 4 years ago
Labels: duplicate, enhancement

#37 - get_edge_info does not accept list of SUIDs of edges

Issue - State: closed - Opened by kozo2 almost 4 years ago - 6 comments
Labels: bug

#36 - Cookbook: Use a dataframe before calling load_table_data()

Issue - State: open - Opened by bdemchak almost 4 years ago - 4 comments
Labels: documentation

#35 - Cookbook: pass full path name in commands_post()

Issue - State: open - Opened by bdemchak almost 4 years ago - 1 comment
Labels: documentation

#34 - Cookbook: create visual property map

Issue - State: open - Opened by bdemchak almost 4 years ago - 1 comment
Labels: documentation

#33 - Add overwrite parameters to file operations

Issue - State: closed - Opened by bdemchak almost 4 years ago - 3 comments
Labels: enhancement

#32 - Improve get_network_list() performance

Issue - State: closed - Opened by bdemchak almost 4 years ago - 2 comments
Labels: enhancement

#31 - Optimize functions that operate with Sandbox send_to and get_from functions

Issue - State: closed - Opened by bdemchak almost 4 years ago - 3 comments
Labels: enhancement

#30 - Add semantics parameters to import_network_from_file()

Issue - State: closed - Opened by bdemchak almost 4 years ago - 5 comments
Labels: enhancement

#29 - Issue Cytoscape version warnings

Issue - State: closed - Opened by bdemchak almost 4 years ago - 2 comments
Labels: enhancement

#28 - load_table_data funtion not work

Issue - State: closed - Opened by yihangx about 4 years ago - 2 comments

#27 - Sync invisible() behavior with RCy3

Issue - State: closed - Opened by bdemchak about 4 years ago - 1 comment
Labels: RCy3 Sync

#26 - Sync with new checks to filter processing in RCy3

Issue - State: closed - Opened by bdemchak about 4 years ago - 3 comments
Labels: RCy3 Sync

#25 - Match error handling messages for RCy3 StyleDefaults.R functions

Issue - State: closed - Opened by bdemchak about 4 years ago - 3 comments
Labels: RCy3 Sync

#24 - Sync with RCy3 getNetworkViewSUID refactor

Issue - State: closed - Opened by bdemchak about 4 years ago - 4 comments
Labels: RCy3 Sync

#23 - Sync error handling with RCy3

Issue - State: closed - Opened by bdemchak about 4 years ago - 2 comments
Labels: RCy3 Sync

#22 - Add getCurrentStyle

Issue - State: closed - Opened by bdemchak about 4 years ago - 4 comments
Labels: duplicate, RCy3 Sync

#21 - deprecation warning: pandas orient

Issue - State: closed - Opened by jorgeboucas about 4 years ago - 2 comments
Labels: bug

#20 - runsanitytests.bat: not able to load test data

Issue - State: closed - Opened by jorgeboucas about 4 years ago - 6 comments
Labels: bug

#19 - runalltests.bat: stuck on test_open_app_store()

Issue - State: open - Opened by jorgeboucas about 4 years ago - 3 comments
Labels: bug

#18 - Docker env

Pull Request - State: closed - Opened by jorgeboucas about 4 years ago
Labels: enhancement

#17 - docker dev & test environment

Issue - State: open - Opened by jorgeboucas about 4 years ago - 10 comments
Labels: enhancement

#16 - Add get_current_style

Issue - State: closed - Opened by AlexanderPico about 4 years ago - 1 comment
Labels: enhancement, good first issue

#15 - INSTALL.rst

Issue - State: closed - Opened by AlexanderPico about 4 years ago - 1 comment
Labels: question

#14 - new tutorial about mcode

Pull Request - State: closed - Opened by tyasird over 4 years ago - 1 comment

#13 - get MCODE cluster network images

Issue - State: closed - Opened by tyasird over 4 years ago - 12 comments

#12 - run MCODE plugin with py4cytoscape

Issue - State: closed - Opened by tyasird over 4 years ago - 3 comments

#11 - Return vals

Pull Request - State: closed - Opened by bdemchak over 4 years ago

#10 - Set dependencies

Issue - State: closed - Opened by stefangeorg over 4 years ago - 3 comments

#9 - Fixed broken link to the tutorials page on readthedocs

Pull Request - State: closed - Opened by coleslaw481 over 4 years ago - 1 comment

#8 - In the Verify Cytoscape connection code fragment made file path platform agnostic

Pull Request - State: closed - Opened by coleslaw481 over 4 years ago - 7 comments

#7 - Remove delays from test_filters.py.

Pull Request - State: closed - Opened by mikekucera over 4 years ago - 1 comment

#6 - Add how to try tutorial without installation (by using Binder)

Pull Request - State: closed - Opened by kozo2 over 4 years ago - 4 comments

#5 - Add a tutorial ipynb file to the Sphinx source

Pull Request - State: closed - Opened by kozo2 over 4 years ago - 1 comment

#2 - Add How to install and use

Pull Request - State: closed - Opened by kozo2 almost 5 years ago - 1 comment

#1 - Add RCy3's "cytoscapePing" equivalent

Pull Request - State: closed - Opened by kozo2 almost 5 years ago - 2 comments

GitHub / cytoscape/py4cytoscape issues and pull requests