cytoscape/py2cytoscape issues and pull requests

#107 - Question: Moving Centrality features to Python

Issue - State: open - Opened by BrandonKMLee over 3 years ago

#106 - py2cytoscape connection from JupyterHub

Issue - State: open - Opened by hmassalha over 3 years ago

#105 - Update util_networkx to work with networkx

Pull Request - State: open - Opened by DnlRKorn over 3 years ago

#104 - cytoscape.vizmap.apply fails if 3.8.2 if no network is selected

Issue - State: open - Opened by jorgeboucas almost 4 years ago

#103 - Update util_networkx.py

Pull Request - State: open - Opened by adamlawr-cisco almost 4 years ago

#102 - Fix typo in optional requirements (parakimo -> paramiko)

Pull Request - State: open - Opened by moritzschaefer about 4 years ago

#101 - problem edge bending py2cytoscape 0.7 python 3.7

Issue - State: open - Opened by Benito-chem about 4 years ago - 1 comment

#100 - Update "travis.yml" test matrix to test currently active python versions

Pull Request - State: open - Opened by matthiaskoenig about 4 years ago

#99 - problem importing cyrest from py2cytoscape (python 2.7.15)

Issue - State: closed - Opened by Benito-chem about 4 years ago - 3 comments

#98 - cyclient.network.export not returning position of nodes

Issue - State: open - Opened by maurodlt over 4 years ago

#97 - RCy3 selectNodes equivalent function

Issue - State: open - Opened by kozo2 almost 5 years ago
Labels: enhancement

#96 - "cyclient.node.select_from_file" returns UnboundLocalError

Issue - State: closed - Opened by kozo2 about 5 years ago

#95 - "cyclient.table.list_columns" does not work(?)

Issue - State: closed - Opened by kozo2 about 5 years ago

#94 - "cyclient.session.open(session_url=" does not work(?)

Issue - State: open - Opened by kozo2 about 5 years ago - 2 comments

#93 - Python3 support

Pull Request - State: open - Opened by zachary822 over 5 years ago

#92 - Aggressively fix whitespace issues

Pull Request - State: open - Opened by zachary822 over 5 years ago

#91 - how to set node width

Issue - State: open - Opened by mtill over 5 years ago - 2 comments

#90 - Problem in selecting nodes in CyNetwork/CyRestClient, loading network in cyrest.client()

Issue - State: closed - Opened by sayonidas03 over 5 years ago - 2 comments

#89 - Fix vizmap

Pull Request - State: closed - Opened by zachary822 over 5 years ago - 1 comment

#88 - Fix data

Pull Request - State: closed - Opened by zachary822 over 5 years ago - 1 comment

#87 - Cyrest not loading style from file

Issue - State: closed - Opened by mwang87 over 5 years ago - 5 comments

#86 - Dropping python 2 support?

Issue - State: closed - Opened by zachary822 over 5 years ago - 3 comments

#85 - Why?

Issue - State: closed - Opened by zachary822 over 5 years ago - 1 comment

#84 - Read encoded text correctly using requests library

Pull Request - State: closed - Opened by zachary822 over 5 years ago - 1 comment

#83 - Apply layout without node overlap in Cytoscape using py2cytoscape

Issue - State: open - Opened by Niveda-S over 5 years ago - 1 comment

#82 - Unlock node width and height

Issue - State: closed - Opened by Niveda-S over 5 years ago - 2 comments

#81 - when a py2cytoscape version, compatible with Python 3.7.1, will be available?

Issue - State: closed - Opened by empet over 5 years ago - 5 comments
Labels: enhancement

#80 - how to run the example,

Issue - State: open - Opened by SeekPoint over 5 years ago - 8 comments
Labels: help wanted

#79 - TypeError: the JSON object must be str, not 'bytes' when using py2cytoscape.cyrest.cyclient()

Issue - State: closed - Opened by 229668880 over 5 years ago - 3 comments

#78 - py2cytoscape: index is reset multiple times within a for loop in util.name2suid()

Issue - State: closed - Opened by empet over 5 years ago

#77 - cytoscape.styles.getVisualProperties()

Issue - State: closed - Opened by jorgeboucas almost 6 years ago

#76 - correct indentation errors

Pull Request - State: closed - Opened by moritzschaefer almost 6 years ago

#75 - 3 spaces instead of four lead to failure when using util_igraph

Issue - State: closed - Opened by moritzschaefer almost 6 years ago - 1 comment

#74 - Linking fails when installing through Arch Linux

Issue - State: closed - Opened by moritzschaefer almost 6 years ago - 2 comments

#73 - Invalid syntax in util.util_dataframe

Issue - State: closed - Opened by gaberosser almost 6 years ago - 1 comment

#72 - test notebook on container

Issue - State: open - Opened by jorgeboucas about 6 years ago

#71 - fixed api typo in call for add_edge from add adge to add_edge

Pull Request - State: closed - Opened by andorsk about 6 years ago - 1 comment

#70 - Cytoscape add_edge returns invalid call. Seems typo in api call?

Issue - State: closed - Opened by andorsk about 6 years ago - 1 comment

#69 - Cytoscape default style settings

Issue - State: closed - Opened by kzhang529 about 6 years ago - 3 comments
Labels: help wanted

#68 - Commands code cannot connect to Cytoscape Instance

Issue - State: closed - Opened by mwang87 over 6 years ago - 3 comments
Labels: help wanted

#67 - Functions code cannot connect to Cytoscape not on default port

Issue - State: closed - Opened by mwang87 over 6 years ago - 2 comments
Labels: help wanted

#66 - Which is active code

Issue - State: closed - Opened by mwang87 over 6 years ago - 5 comments
Labels: question

#65 - Py2cytocscape renderer.render always results as none

Issue - State: closed - Opened by shaaaarpy over 6 years ago - 2 comments
Labels: bug

#64 - renderer.render method in jupyter-notebook shows an empty graph.

Issue - State: open - Opened by shaaaarpy over 6 years ago - 8 comments
Labels: bug

#63 - Making util_dataframe.py python2 compatible.

Pull Request - State: closed - Opened by JamesPino over 6 years ago

#62 - CyRest in developmental version is not working: <title>Error 405 Method Not Allowed</title>

Issue - State: closed - Opened by IvoLeist over 6 years ago - 2 comments

#61 - edge get uses incorrect endpoint

Issue - State: closed - Opened by dotasek over 6 years ago

#60 - network clone uses incorrect endpoint

Issue - State: closed - Opened by dotasek over 6 years ago

#59 - groups may be using wrong URL root

Issue - State: closed - Opened by dotasek over 6 years ago

#58 - 201 shouldn't be considered an error

Issue - State: closed - Opened by dotasek over 6 years ago

#57 - api(...) method should use raise an exception

Issue - State: closed - Opened by dotasek over 6 years ago - 2 comments

#56 - make igraph optional

Issue - State: closed - Opened by schlegelp over 6 years ago - 4 comments
Labels: enhancement

#55 - docs/table

Issue - State: closed - Opened by jorgeboucas over 6 years ago - 1 comment
Labels: bug

#54 - Clarification on documentation / API for cyrest client

Issue - State: closed - Opened by krassowski over 6 years ago - 5 comments
Labels: bug

#53 - swagger compliance

Issue - State: closed - Opened by jorgeboucas over 6 years ago - 7 comments
Labels: enhancement

#52 - cybrowser.hide

Issue - State: closed - Opened by jorgeboucas over 6 years ago - 3 comments
Labels: bug

#51 - shorten readme

Issue - State: closed - Opened by jorgeboucas over 6 years ago

#50 - migrate examples folder to for_scripters

Issue - State: open - Opened by jorgeboucas over 6 years ago
Labels: enhancement

#49 - Pr/15

Pull Request - State: closed - Opened by jorgeboucas over 6 years ago

#48 - readthedocs

Issue - State: closed - Opened by jorgeboucas over 6 years ago - 5 comments

#47 - remove dead branches

Issue - State: closed - Opened by jorgeboucas over 6 years ago

#46 - merges

Issue - State: closed - Opened by jorgeboucas over 6 years ago

#45 - Update style.py

Pull Request - State: closed - Opened by romainstuder over 6 years ago

#44 - StyleClient can now create new style from predefined style

Pull Request - State: closed - Opened by nicolaselie almost 7 years ago

#43 - Update loader.js

Pull Request - State: closed - Opened by cs48a about 7 years ago - 4 comments

#42 - fix typo

Pull Request - State: closed - Opened by rgbkrk about 7 years ago - 2 comments

#41 - Update network_view.py

Pull Request - State: closed - Opened by pkrezel over 7 years ago

#40 - Update util_network.py

Pull Request - State: closed - Opened by pkrezel over 7 years ago

#39 - Update cynetwork.py

Pull Request - State: closed - Opened by pkrezel over 7 years ago

#38 - StileUtil with method for single point

Pull Request - State: closed - Opened by gmariotti over 7 years ago

#37 - Added the possibility to use extra columns from Dataframe for creating the network

Pull Request - State: closed - Opened by gmariotti over 7 years ago

#36 - Get HTML from py2cytoscape.cytoscapejs.viewer.render

Issue - State: open - Opened by gilesc over 7 years ago

#35 - igraph issue

Issue - State: open - Opened by jhimm over 7 years ago

#34 - Running Jupyter Notebook - basic1.ipynb fails to execute

Issue - State: closed - Opened by jmclark over 7 years ago - 1 comment

#33 - Fixed a typo in CyNetworkView.__get_views

Pull Request - State: closed - Opened by rundong08 over 7 years ago

#32 - cy.network.create_from() fails when executed from Bash on Ubuntu on Windows

Issue - State: closed - Opened by kozo2 over 7 years ago - 1 comment

#31 - JSONDecodeError with Python36 json decoder

Issue - State: closed - Opened by kozo2 over 7 years ago - 3 comments

#30 - How does this library work?

Issue - State: closed - Opened by pwichmann over 7 years ago - 2 comments

#29 - CyRestClient.style ignores custom ip/port settings

Issue - State: closed - Opened by thomaskelder over 7 years ago - 1 comment

#28 - Not creating view for large networks

Issue - State: closed - Opened by sauloal over 7 years ago - 1 comment

#27 - Using extras_require for easy installation

Issue - State: closed - Opened by kozo2 almost 8 years ago
Labels: enhancement

#26 - python 3.x support for utils, from_networkx

Issue - State: open - Opened by cs48a almost 8 years ago - 1 comment

#25 - An example of using the updating functions of view

Pull Request - State: closed - Opened by dwgoon about 8 years ago - 1 comment

#24 - Apply check_response in CyNetworkView

Pull Request - State: closed - Opened by dwgoon about 8 years ago

#23 - Cannot update table if the data key is Index

Issue - State: closed - Opened by keiono about 8 years ago
Labels: bug

#22 - Add the omitted __get_view_df

Pull Request - State: closed - Opened by dwgoon about 8 years ago - 2 comments

#21 - edgelist format support

Issue - State: open - Opened by kozo2 over 8 years ago
Labels: enhancement

#20 - graph-tool interface

Issue - State: open - Opened by fourpartswater over 8 years ago
Labels: enhancement

#19 - Igraph issue

Issue - State: closed - Opened by Svenh98 over 8 years ago - 2 comments
Labels: invalid

#18 - readthedocs documentation

Issue - State: closed - Opened by kozo2 almost 9 years ago - 1 comment

#17 - Share requests session between requests

Pull Request - State: closed - Opened by scholer about 9 years ago - 2 comments

#16 - Check response

Pull Request - State: closed - Opened by scholer about 9 years ago

#15 - Improved return type consistency

Pull Request - State: closed - Opened by scholer about 9 years ago - 1 comment

#14 - Could we implement session save?

Issue - State: closed - Opened by brownmk about 9 years ago - 1 comment
Labels: enhancement

#13 - How to obtain a CyNetwork object from a remote server

Issue - State: closed - Opened by brownmk about 9 years ago - 2 comments
Labels: bug

#11 - adding docstrings

Issue - State: closed - Opened by kozo2 over 9 years ago - 1 comment

#10 - node layout based on coordinate csv

Issue - State: open - Opened by kozo2 over 9 years ago - 1 comment
Labels: enhancement

#9 - importing sif like pandas dataframe

Issue - State: closed - Opened by kozo2 over 9 years ago - 2 comments

#8 - add import_network function

Issue - State: closed - Opened by kozo2 over 9 years ago - 1 comment

#4 - shortcut to set values to the chart column

Issue - State: open - Opened by kozo2 almost 10 years ago

GitHub / cytoscape/py2cytoscape issues and pull requests