Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / cytoscape/RCy3 issues and pull requests

#101 - Looping checks rather than fixed delays

Issue - State: closed - Opened by AlexanderPico almost 4 years ago - 3 comments
Labels: enhancement

#100 - cytoscape cannot be launched

Issue - State: closed - Opened by saeedfc almost 4 years ago - 2 comments
Labels: question

#99 - openSession stalls

Issue - State: closed - Opened by AlexanderPico almost 4 years ago - 1 comment
Labels: bug, pending

#98 - 'no network views selected' error

Issue - State: closed - Opened by raph06 almost 4 years ago - 7 comments
Labels: bug

#97 - setNodeColorMapping error -- curl error -- base.url

Issue - State: closed - Opened by richabatra about 4 years ago - 2 comments

#96 - Calling createGraphFromNetwork fails

Issue - State: closed - Opened by sshechte about 4 years ago - 2 comments
Labels: question

#95 - Overhaul error handling and messaging

Issue - State: closed - Opened by AlexanderPico about 4 years ago
Labels: documentation

#94 - Error in the last step of the createNetworkFromDataFrames - layoutNetwork?

Issue - State: closed - Opened by GoBinn over 4 years ago - 1 comment
Labels: bug

#93 - Add yml for GitHub Actions

Pull Request - State: closed - Opened by kozo2 over 4 years ago

#92 - Feedback after installing apps

Issue - State: closed - Opened by llrs over 4 years ago - 1 comment
Labels: documentation

#91 - How to extract x and y values of all the nodes in a network

Issue - State: closed - Opened by crotoc over 4 years ago - 5 comments
Labels: question

#89 - SUID is returned from Networks.R/getNetworkName()

Issue - State: closed - Opened by bdemchak over 4 years ago - 2 comments
Labels: question

#88 - Missing base.url in internal calls

Issue - State: closed - Opened by bdemchak over 4 years ago
Labels: bug

#87 - add return message to style changes

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: documentation

#86 - Missing functions and Importing problems

Issue - State: closed - Opened by Skourtis almost 5 years ago - 18 comments
Labels: question

#85 - setNodeColorBypass with SUID instead of name

Issue - State: closed - Opened by mkutmon almost 5 years ago - 1 comment
Labels: question

#84 - New function for node size legend?

Issue - State: open - Opened by AlexanderPico almost 5 years ago - 2 comments
Labels: enhancement

#83 - BiocCheck note: use seq_along

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug

#82 - Missing param in getSelectedNodes/Edges

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug

#81 - createNetworkFromDataFrames scrambles shared.name and name

Issue - State: closed - Opened by K-C-Martin almost 5 years ago - 24 comments
Labels: bug

#80 - createNetworkFromDataFrames is slow in final steps

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug

#79 - add getNodePositions

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: enhancement

#78 - getNodeProperty should use different cyrest method for all nodes

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: enhancement

#77 - Why does getTableColumns('node') return single column?

Issue - State: closed - Opened by kozo2 almost 5 years ago - 2 comments
Labels: question

#76 - getNetworkSuid does not work for Name including digits (?)

Issue - State: closed - Opened by kozo2 almost 5 years ago - 5 comments
Labels: bug

#75 - RCy3 Documentation Error

Issue - State: closed - Opened by m-grimes almost 5 years ago - 2 comments
Labels: question

#74 - yikes! bad typo

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug

#73 - parameters are wrong in getSelectedNodes/Edges in multiple Filter functions

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug

#72 - remove factors in df for createNetworkFromDataFrames

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: enhancement

#71 - add arg to getSelectedNodes/Edges to return SUIDs

Issue - State: closed - Opened by AlexanderPico almost 5 years ago
Labels: enhancement

#70 - openSession does not work with base.url= option ?

Issue - State: closed - Opened by kozo2 almost 5 years ago - 1 comment
Labels: invalid

#69 - Do we need to add "setDefaultBaseUrl" function to RCy3?

Issue - State: closed - Opened by kozo2 almost 5 years ago - 19 comments
Labels: question

#68 - openSession(file.location = "http://nrnb.org/data/BasicDataVizDemo.cys") does not work

Issue - State: closed - Opened by kozo2 about 5 years ago - 1 comment
Labels: bug

#67 - Add support for creating groups by column-defined node lists

Issue - State: closed - Opened by AlexanderPico about 5 years ago
Labels: enhancement

#66 - remove labels of nodes or edges?

Issue - State: closed - Opened by yiluheihei about 5 years ago - 2 comments
Labels: question

#65 - test.getLayoutPropertyNames fails

Issue - State: closed - Opened by AlexanderPico about 5 years ago
Labels: bug

#64 - subscript and superscript cytoscape

Issue - State: closed - Opened by eagomezc about 5 years ago - 4 comments
Labels: question

#63 - setNodeColorBypass errors

Issue - State: closed - Opened by kkami1115 about 5 years ago - 7 comments
Labels: question

#62 - file import functions should consider current working directory

Issue - State: closed - Opened by AlexanderPico over 5 years ago
Labels: bug

#61 - missing getEdgeInfo

Issue - State: closed - Opened by AlexanderPico over 5 years ago
Labels: bug

#60 - Layout Parameter Type and Value are incomplete

Issue - State: open - Opened by AlexanderPico over 5 years ago - 1 comment
Labels: bug, pending

#59 - How to apply layout with mapping to edge attribute?

Issue - State: closed - Opened by twesleyb over 5 years ago - 4 comments
Labels: question

#57 - Add support for lists to loadTableData

Issue - State: closed - Opened by AlexanderPico over 5 years ago
Labels: enhancement

#56 - Missing edge attributes in networks with multiple edges

Issue - State: closed - Opened by SuhasSrinivasan over 5 years ago - 2 comments
Labels: bug

#55 - Error with test.filters

Issue - State: closed - Opened by ariutta over 5 years ago

#54 - Exporting with non-ASCII filepaths

Issue - State: closed - Opened by ariutta over 5 years ago - 1 comment
Labels: question

#53 - Check for visual.prop in mapVisualProperty

Issue - State: closed - Opened by AlexanderPico over 5 years ago
Labels: documentation

#52 - Can't get node table for for WP186

Issue - State: closed - Opened by ariutta over 5 years ago - 3 comments
Labels: bug

#51 - test for filters

Issue - State: closed - Opened by ariutta over 5 years ago - 3 comments

#50 - openSession should consider current wd

Issue - State: closed - Opened by AlexanderPico over 5 years ago - 1 comment
Labels: bug

#49 - Missing style functions

Issue - State: closed - Opened by AlexanderPico over 5 years ago - 5 comments
Labels: bug

#48 - Update unhideAll() in StyleBypasses.R pending CyREST update

Issue - State: open - Opened by AlexanderPico over 5 years ago - 1 comment
Labels: enhancement, pending

#47 - add docs for working with phylogenetic trees

Issue - State: closed - Opened by AlexanderPico over 5 years ago
Labels: documentation

#45 - setEdgeLineWidthBypass errors

Issue - State: closed - Opened by m-grimes over 5 years ago - 6 comments
Labels: bug

#44 - Setting base.url for exportNetworkToNDEx

Issue - State: closed - Opened by ariutta over 5 years ago - 1 comment

#43 - small bug in hierarchy with createSubnetwork() when multiple networks of same name

Issue - State: closed - Opened by jooolia over 5 years ago - 1 comment
Labels: bug

#42 - BiocCheck errors and warning

Issue - State: closed - Opened by AlexanderPico almost 6 years ago
Labels: bug

#41 - Edge attributes in multigraphs

Issue - State: closed - Opened by jonaszierer almost 6 years ago - 5 comments
Labels: bug

#40 - Filters don't use network arg

Issue - State: closed - Opened by AlexanderPico almost 6 years ago
Labels: bug

#39 - Save and Export functions should save to working directory by default

Issue - State: closed - Opened by AlexanderPico almost 6 years ago
Labels: bug

#38 - Not able to customize node height and weight for ellipse

Issue - State: closed - Opened by Krithika-Bhuvan almost 6 years ago - 3 comments
Labels: question

#37 - a bug(?) in .nodeNameToSUID (and consequently setNodePropertyBypass)

Issue - State: closed - Opened by vttrifonov about 6 years ago - 1 comment
Labels: bug

#36 - selectEdgesConnectingSelectedNodes not working

Issue - State: closed - Opened by AlexanderPico about 6 years ago
Labels: bug

#35 - Add function to remove duplicate edges

Issue - State: closed - Opened by risserlin about 6 years ago - 3 comments
Labels: enhancement

#34 - no function to "Select Nodes connecetd by selected edges"

Issue - State: closed - Opened by risserlin about 6 years ago - 4 comments
Labels: enhancement

#33 - Vignette bugs via Brett

Issue - State: closed - Opened by AlexanderPico about 6 years ago - 1 comment
Labels: documentation

#32 - Commits to be released in 2.2.0

Issue - State: closed - Opened by AlexanderPico about 6 years ago - 1 comment
Labels: documentation

#30 - Feature request: layout property access

Issue - State: closed - Opened by m-grimes over 6 years ago - 2 comments
Labels: question

#29 - Cytoscape crashes when group nodes are moved in subnetworks

Issue - State: closed - Opened by m-grimes over 6 years ago - 7 comments
Labels: bug

#28 - getGroupInfo

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: bug

#27 - discrete mapping.type not working in setEdgeLineWidthMapping

Issue - State: closed - Opened by m-grimes over 6 years ago - 1 comment

#26 - calls missing base.url and crash when base.url <> default

Issue - State: closed - Opened by vttrifonov over 6 years ago - 1 comment
Labels: bug

#25 - cyREST

Issue - State: closed - Opened by m-grimes over 6 years ago - 8 comments

#24 - Argument type unclear for setNodeColorMapping

Issue - State: closed - Opened by dotasek over 6 years ago - 1 comment
Labels: bug

#23 - problem with createNetworkFromDataFrames

Issue - State: closed - Opened by jd690764 over 6 years ago - 1 comment
Labels: bug

#22 - fixed a typo in README

Pull Request - State: closed - Opened by Jorisvansteenbrugge over 6 years ago

#21 - getTableColumns does not get all elements in the List type column

Issue - State: closed - Opened by kozo2 over 6 years ago - 1 comment
Labels: bug

#20 - igraph issues

Issue - State: closed - Opened by magnuspalmblad over 6 years ago - 7 comments
Labels: question

#19 - 405 error code when running "Overview" vignette

Issue - State: closed - Opened by shraddhapai over 6 years ago - 3 comments
Labels: bug

#18 - getting the suid into an actual numeric

Pull Request - State: closed - Opened by rmflight over 6 years ago - 2 comments

#17 - getNetworkSuid returns NA

Issue - State: closed - Opened by rmflight over 6 years ago - 3 comments

#16 - Add function to report a bug/feature request?

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: enhancement

#15 - Functions to add

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 8 comments
Labels: enhancement, good first issue, pending

#14 - RELEASE NOTES

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: enhancement

#13 - Create LICENSE

Pull Request - State: closed - Opened by AlexanderPico over 6 years ago

#12 - Bioconductor release plan

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: documentation

#11 - Add network collection titles to all network create methods

Issue - State: closed - Opened by AlexanderPico over 6 years ago
Labels: bug

#10 - Ideas for help docs

Issue - State: closed - Opened by AlexanderPico over 6 years ago
Labels: enhancement

#9 - Possible bug in getGraphFromCyWindow

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: bug

#8 - test saveNetwork()

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: bug

#7 - Issue selecting nodes with selectNodes()

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: bug

#6 - Edge rules

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: bug

#5 - cyPlot issues

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 1 comment
Labels: bug

#4 - Add vignettes

Issue - State: closed - Opened by AlexanderPico over 6 years ago
Labels: enhancement

#3 - Add function: renameTableColumn

Issue - State: closed - Opened by AlexanderPico over 6 years ago
Labels: enhancement, good first issue

#2 - Address import of numerical data into Tables

Issue - State: closed - Opened by AlexanderPico over 6 years ago
Labels: bug

#1 - Can I import a local xml style file with r2cytoscape?

Issue - State: closed - Opened by AlexanderPico over 6 years ago - 3 comments
Labels: enhancement