Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / cytoscape/RCy3 issues and pull requests
#101 - Looping checks rather than fixed delays
Issue -
State: closed - Opened by AlexanderPico almost 4 years ago
- 3 comments
Labels: enhancement
#100 - cytoscape cannot be launched
Issue -
State: closed - Opened by saeedfc almost 4 years ago
- 2 comments
Labels: question
#99 - openSession stalls
Issue -
State: closed - Opened by AlexanderPico almost 4 years ago
- 1 comment
Labels: bug, pending
#98 - 'no network views selected' error
Issue -
State: closed - Opened by raph06 almost 4 years ago
- 7 comments
Labels: bug
#97 - setNodeColorMapping error -- curl error -- base.url
Issue -
State: closed - Opened by richabatra about 4 years ago
- 2 comments
#96 - Calling createGraphFromNetwork fails
Issue -
State: closed - Opened by sshechte about 4 years ago
- 2 comments
Labels: question
#95 - Overhaul error handling and messaging
Issue -
State: closed - Opened by AlexanderPico about 4 years ago
Labels: documentation
#94 - Error in the last step of the createNetworkFromDataFrames - layoutNetwork?
Issue -
State: closed - Opened by GoBinn over 4 years ago
- 1 comment
Labels: bug
#93 - Add yml for GitHub Actions
Pull Request -
State: closed - Opened by kozo2 over 4 years ago
#92 - Feedback after installing apps
Issue -
State: closed - Opened by llrs over 4 years ago
- 1 comment
Labels: documentation
#91 - How to extract x and y values of all the nodes in a network
Issue -
State: closed - Opened by crotoc over 4 years ago
- 5 comments
Labels: question
#89 - SUID is returned from Networks.R/getNetworkName()
Issue -
State: closed - Opened by bdemchak over 4 years ago
- 2 comments
Labels: question
#88 - Missing base.url in internal calls
Issue -
State: closed - Opened by bdemchak over 4 years ago
Labels: bug
#87 - add return message to style changes
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: documentation
#86 - Missing functions and Importing problems
Issue -
State: closed - Opened by Skourtis almost 5 years ago
- 18 comments
Labels: question
#85 - setNodeColorBypass with SUID instead of name
Issue -
State: closed - Opened by mkutmon almost 5 years ago
- 1 comment
Labels: question
#84 - New function for node size legend?
Issue -
State: open - Opened by AlexanderPico almost 5 years ago
- 2 comments
Labels: enhancement
#83 - BiocCheck note: use seq_along
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug
#82 - Missing param in getSelectedNodes/Edges
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug
#81 - createNetworkFromDataFrames scrambles shared.name and name
Issue -
State: closed - Opened by K-C-Martin almost 5 years ago
- 24 comments
Labels: bug
#80 - createNetworkFromDataFrames is slow in final steps
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug
#79 - add getNodePositions
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: enhancement
#78 - getNodeProperty should use different cyrest method for all nodes
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: enhancement
#77 - Why does getTableColumns('node') return single column?
Issue -
State: closed - Opened by kozo2 almost 5 years ago
- 2 comments
Labels: question
#76 - getNetworkSuid does not work for Name including digits (?)
Issue -
State: closed - Opened by kozo2 almost 5 years ago
- 5 comments
Labels: bug
#75 - RCy3 Documentation Error
Issue -
State: closed - Opened by m-grimes almost 5 years ago
- 2 comments
Labels: question
#74 - yikes! bad typo
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug
#73 - parameters are wrong in getSelectedNodes/Edges in multiple Filter functions
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: bug
#72 - remove factors in df for createNetworkFromDataFrames
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: enhancement
#71 - add arg to getSelectedNodes/Edges to return SUIDs
Issue -
State: closed - Opened by AlexanderPico almost 5 years ago
Labels: enhancement
#70 - openSession does not work with base.url= option ?
Issue -
State: closed - Opened by kozo2 almost 5 years ago
- 1 comment
Labels: invalid
#69 - Do we need to add "setDefaultBaseUrl" function to RCy3?
Issue -
State: closed - Opened by kozo2 almost 5 years ago
- 19 comments
Labels: question
#68 - openSession(file.location = "http://nrnb.org/data/BasicDataVizDemo.cys") does not work
Issue -
State: closed - Opened by kozo2 about 5 years ago
- 1 comment
Labels: bug
#67 - Add support for creating groups by column-defined node lists
Issue -
State: closed - Opened by AlexanderPico about 5 years ago
Labels: enhancement
#66 - remove labels of nodes or edges?
Issue -
State: closed - Opened by yiluheihei about 5 years ago
- 2 comments
Labels: question
#65 - test.getLayoutPropertyNames fails
Issue -
State: closed - Opened by AlexanderPico about 5 years ago
Labels: bug
#64 - subscript and superscript cytoscape
Issue -
State: closed - Opened by eagomezc about 5 years ago
- 4 comments
Labels: question
#63 - setNodeColorBypass errors
Issue -
State: closed - Opened by kkami1115 about 5 years ago
- 7 comments
Labels: question
#62 - file import functions should consider current working directory
Issue -
State: closed - Opened by AlexanderPico over 5 years ago
Labels: bug
#61 - missing getEdgeInfo
Issue -
State: closed - Opened by AlexanderPico over 5 years ago
Labels: bug
#60 - Layout Parameter Type and Value are incomplete
Issue -
State: open - Opened by AlexanderPico over 5 years ago
- 1 comment
Labels: bug, pending
#59 - How to apply layout with mapping to edge attribute?
Issue -
State: closed - Opened by twesleyb over 5 years ago
- 4 comments
Labels: question
#58 - Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
Issue -
State: closed - Opened by methornton over 5 years ago
- 2 comments
Labels: bug
#57 - Add support for lists to loadTableData
Issue -
State: closed - Opened by AlexanderPico over 5 years ago
Labels: enhancement
#56 - Missing edge attributes in networks with multiple edges
Issue -
State: closed - Opened by SuhasSrinivasan over 5 years ago
- 2 comments
Labels: bug
#55 - Error with test.filters
Issue -
State: closed - Opened by ariutta over 5 years ago
#54 - Exporting with non-ASCII filepaths
Issue -
State: closed - Opened by ariutta over 5 years ago
- 1 comment
Labels: question
#53 - Check for visual.prop in mapVisualProperty
Issue -
State: closed - Opened by AlexanderPico over 5 years ago
Labels: documentation
#52 - Can't get node table for for WP186
Issue -
State: closed - Opened by ariutta over 5 years ago
- 3 comments
Labels: bug
#51 - test for filters
Issue -
State: closed - Opened by ariutta over 5 years ago
- 3 comments
#50 - openSession should consider current wd
Issue -
State: closed - Opened by AlexanderPico over 5 years ago
- 1 comment
Labels: bug
#49 - Missing style functions
Issue -
State: closed - Opened by AlexanderPico over 5 years ago
- 5 comments
Labels: bug
#48 - Update unhideAll() in StyleBypasses.R pending CyREST update
Issue -
State: open - Opened by AlexanderPico over 5 years ago
- 1 comment
Labels: enhancement, pending
#47 - add docs for working with phylogenetic trees
Issue -
State: closed - Opened by AlexanderPico over 5 years ago
Labels: documentation
#46 - fix for issue #43 where SUID use for source is more descriptive than …network name when creating subnetworks
Pull Request -
State: closed - Opened by jooolia over 5 years ago
#45 - setEdgeLineWidthBypass errors
Issue -
State: closed - Opened by m-grimes over 5 years ago
- 6 comments
Labels: bug
#44 - Setting base.url for exportNetworkToNDEx
Issue -
State: closed - Opened by ariutta over 5 years ago
- 1 comment
#43 - small bug in hierarchy with createSubnetwork() when multiple networks of same name
Issue -
State: closed - Opened by jooolia over 5 years ago
- 1 comment
Labels: bug
#42 - BiocCheck errors and warning
Issue -
State: closed - Opened by AlexanderPico almost 6 years ago
Labels: bug
#41 - Edge attributes in multigraphs
Issue -
State: closed - Opened by jonaszierer almost 6 years ago
- 5 comments
Labels: bug
#40 - Filters don't use network arg
Issue -
State: closed - Opened by AlexanderPico almost 6 years ago
Labels: bug
#39 - Save and Export functions should save to working directory by default
Issue -
State: closed - Opened by AlexanderPico almost 6 years ago
Labels: bug
#38 - Not able to customize node height and weight for ellipse
Issue -
State: closed - Opened by Krithika-Bhuvan almost 6 years ago
- 3 comments
Labels: question
#37 - a bug(?) in .nodeNameToSUID (and consequently setNodePropertyBypass)
Issue -
State: closed - Opened by vttrifonov about 6 years ago
- 1 comment
Labels: bug
#36 - selectEdgesConnectingSelectedNodes not working
Issue -
State: closed - Opened by AlexanderPico about 6 years ago
Labels: bug
#35 - Add function to remove duplicate edges
Issue -
State: closed - Opened by risserlin about 6 years ago
- 3 comments
Labels: enhancement
#34 - no function to "Select Nodes connecetd by selected edges"
Issue -
State: closed - Opened by risserlin about 6 years ago
- 4 comments
Labels: enhancement
#33 - Vignette bugs via Brett
Issue -
State: closed - Opened by AlexanderPico about 6 years ago
- 1 comment
Labels: documentation
#32 - Commits to be released in 2.2.0
Issue -
State: closed - Opened by AlexanderPico about 6 years ago
- 1 comment
Labels: documentation
#31 - getGroupInfo error returned in RCy3 2.0.5 when group is expanded
Issue -
State: closed - Opened by m-grimes over 6 years ago
#30 - Feature request: layout property access
Issue -
State: closed - Opened by m-grimes over 6 years ago
- 2 comments
Labels: question
#29 - Cytoscape crashes when group nodes are moved in subnetworks
Issue -
State: closed - Opened by m-grimes over 6 years ago
- 7 comments
Labels: bug
#28 - getGroupInfo
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: bug
#27 - discrete mapping.type not working in setEdgeLineWidthMapping
Issue -
State: closed - Opened by m-grimes over 6 years ago
- 1 comment
#26 - calls missing base.url and crash when base.url <> default
Issue -
State: closed - Opened by vttrifonov over 6 years ago
- 1 comment
Labels: bug
#25 - cyREST
Issue -
State: closed - Opened by m-grimes over 6 years ago
- 8 comments
#24 - Argument type unclear for setNodeColorMapping
Issue -
State: closed - Opened by dotasek over 6 years ago
- 1 comment
Labels: bug
#23 - problem with createNetworkFromDataFrames
Issue -
State: closed - Opened by jd690764 over 6 years ago
- 1 comment
Labels: bug
#22 - fixed a typo in README
Pull Request -
State: closed - Opened by Jorisvansteenbrugge over 6 years ago
#21 - getTableColumns does not get all elements in the List type column
Issue -
State: closed - Opened by kozo2 over 6 years ago
- 1 comment
Labels: bug
#20 - igraph issues
Issue -
State: closed - Opened by magnuspalmblad over 6 years ago
- 7 comments
Labels: question
#19 - 405 error code when running "Overview" vignette
Issue -
State: closed - Opened by shraddhapai over 6 years ago
- 3 comments
Labels: bug
#18 - getting the suid into an actual numeric
Pull Request -
State: closed - Opened by rmflight over 6 years ago
- 2 comments
#17 - getNetworkSuid returns NA
Issue -
State: closed - Opened by rmflight over 6 years ago
- 3 comments
#16 - Add function to report a bug/feature request?
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: enhancement
#15 - Functions to add
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 8 comments
Labels: enhancement, good first issue, pending
#14 - RELEASE NOTES
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: enhancement
#13 - Create LICENSE
Pull Request -
State: closed - Opened by AlexanderPico over 6 years ago
#12 - Bioconductor release plan
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: documentation
#11 - Add network collection titles to all network create methods
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
Labels: bug
#10 - Ideas for help docs
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
Labels: enhancement
#9 - Possible bug in getGraphFromCyWindow
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: bug
#8 - test saveNetwork()
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: bug
#7 - Issue selecting nodes with selectNodes()
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: bug
#6 - Edge rules
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: bug
#5 - cyPlot issues
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 1 comment
Labels: bug
#4 - Add vignettes
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
Labels: enhancement
#3 - Add function: renameTableColumn
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
Labels: enhancement, good first issue
#2 - Address import of numerical data into Tables
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
Labels: bug
#1 - Can I import a local xml style file with r2cytoscape?
Issue -
State: closed - Opened by AlexanderPico over 6 years ago
- 3 comments
Labels: enhancement