cytham/nanovar issues and pull requests

#92 - v1.8.1

Pull Request - State: closed - Opened by cytham 3 days ago

#91 - v1.8.0 update

Pull Request - State: closed - Opened by cytham 6 days ago

#90 - ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False

Issue - State: open - Opened by lovelycatZ 2 months ago - 9 comments

#89 - bedtools getfasta error

Issue - State: open - Opened by C-YONG 2 months ago - 16 comments

#88 - Bam input - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xb8 in position 4: invalid start byte

Issue - State: open - Opened by Jyoti-Mridha 4 months ago - 3 comments

#87 - Add alt seq and cram support

Pull Request - State: closed - Opened by cytham 4 months ago

#86 - Add alt seq and cram support

Pull Request - State: closed - Opened by cytham 4 months ago

#85 - Upgrade to v1.6.2

Pull Request - State: closed - Opened by benoukraflab 5 months ago

#84 - Upgrade to v1.6.2

Pull Request - State: closed - Opened by benoukraflab 5 months ago

#83 - Upgrade to v1.6.2

Pull Request - State: closed - Opened by AsmaaSamyMohamedMahmoud 5 months ago

#82 - V1.6.2

Pull Request - State: closed - Opened by cytham 5 months ago

#81 - Alternative sequence in VCF

Issue - State: open - Opened by jiadong324 5 months ago - 5 comments

#80 - Bump pillow from 10.2.0 to 10.3.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 3 comments
Labels: dependencies, python

#79 - v1.6.1 - restrict tf<=2.15.1

Pull Request - State: closed - Opened by cytham 6 months ago

#78 - tensorflow 2.16 incompatibility

Pull Request - State: closed - Opened by cytham 6 months ago

#77 - Nanovar crashes with "ValueError: Exception encountered when calling Sequential.call()"

Issue - State: closed - Opened by scharf-f 7 months ago - 2 comments

#76 - update conda version

Issue - State: closed - Opened by bwlang 8 months ago - 2 comments

#75 - Not finding 4kb deletion

Issue - State: closed - Opened by ccbruels 9 months ago - 3 comments

#74 - v1.6.0

Pull Request - State: closed - Opened by cytham 9 months ago

#73 - Bump fonttools from 4.42.1 to 4.43.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, python

#72 - Specifying specific regions to INCLUDE when variant calling (done adaptive sampling for nanopore sequencing)

Issue - State: open - Opened by nbertholdpgc 9 months ago - 1 comment

#71 - IndexError : list index out of range

Issue - State: closed - Opened by skeremaydin 10 months ago - 6 comments

#70 - Removed maxovl filter

Pull Request - State: closed - Opened by cytham 10 months ago

#69 - Fix cytocad import bug

Pull Request - State: closed - Opened by cytham 11 months ago

#68 - cytocad is not listed as a dependency for nanovar:1.5.0

Issue - State: closed - Opened by GallVp 11 months ago - 5 comments

#67 - module 'numpy' has no attribute 'object'.

Issue - State: closed - Opened by GallVp 11 months ago - 6 comments

#66 - Bump werkzeug from 2.3.7 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#65 - Bump urllib3 from 1.26.16 to 1.26.18

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#64 - Bump pillow from 10.0.0 to 10.0.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#63 - Bump urllib3 from 1.26.16 to 1.26.17

Pull Request - State: closed - Opened by dependabot[bot] almost 1 year ago - 1 comment
Labels: dependencies, python

#62 - Workflow failing due to makeblastdb and hs-blastn

Issue - State: closed - Opened by lisosome about 1 year ago - 2 comments

#61 - AttributeError: module 'numpy' has no attribute 'typeDict' (deprecation expired in numpy version 1.24)

Issue - State: closed - Opened by jamesdalg about 1 year ago - 3 comments

#60 - cram file support

Issue - State: open - Opened by kcleal about 1 year ago - 1 comment

#59 - interpreting output (SVLEN)

Issue - State: closed - Opened by rmormando over 1 year ago - 2 comments

#58 - Error: windowmasker obinary failed

Issue - State: closed - Opened by adbeggs over 1 year ago - 1 comment

#57 - Bump werkzeug from 2.0.1 to 2.2.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#56 - Bump oauthlib from 3.1.1 to 3.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#55 - TypeError: Error: Genome filter BED contig id not found in reference at line 1

Issue - State: closed - Opened by egnst almost 2 years ago - 6 comments

#54 - Bump certifi from 2021.5.30 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, python

#53 - Bump pillow from 8.3.2 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, python

#52 - Bump tensorflow-cpu from 2.6.0 to 2.9.3

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, python

#51 - Bump protobuf from 3.17.3 to 3.18.3

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, python

#50 - Bump oauthlib from 3.1.1 to 3.2.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, python

#49 - HTML Report Figure's Aren't Showing

Issue - State: closed - Opened by Mrromeros about 2 years ago - 4 comments