cvnlab/GLMsingle issues and pull requests

#130 - Bugfix for elementwise comparison

Pull Request - State: closed - Opened by Gilles86 6 months ago

#129 - What does the cross-validation do when there are no repeats?

Issue - State: open - Opened by ryskina 7 months ago - 1 comment

#128 - Bug in saving HDF5 file with None values

Pull Request - State: open - Opened by gretatuckute 8 months ago

#127 - Bug in saving HDF5 file with None values

Pull Request - State: closed - Opened by gretatuckute 8 months ago

#126 - debug extra_regressors functionality for python version

Pull Request - State: closed - Opened by jacob-prince 8 months ago

#125 - AssertionError: <extra_regressors> should match the number of runs

Issue - State: closed - Opened by banjogirl 8 months ago - 2 comments

#124 - minor ports from matlab to python (re: cases with no repeats; new FIR summary voxel viz)

Pull Request - State: closed - Opened by jacob-prince 9 months ago - 7 comments
Labels: enhancement

#123 - Seeking Assistance with GLMsingle Model Anomalies

Issue - State: open - Opened by Yujie-cog 9 months ago - 3 comments

#121 - feature request: provide mask for top 1% voxels related to a runwiseFIR.png

Issue - State: closed - Opened by andreifoldes 10 months ago - 3 comments

#119 - Issues upsampling

Issue - State: open - Opened by andreifoldes 10 months ago

#114 - Major revision of the Python GLMsingle [WIP]

Pull Request - State: closed - Opened by iancharest 12 months ago

#111 - What is the additional elements added as the predictors in the output?

Issue - State: closed - Opened by MtKana about 1 year ago - 6 comments

#108 - checks for float 32

Pull Request - State: closed - Opened by iancharest about 1 year ago

#107 - fixes zerodiv broadcasting error.

Pull Request - State: closed - Opened by iancharest about 1 year ago - 1 comment

#106 - Memory error - python3

Issue - State: open - Opened by chkmp about 1 year ago - 10 comments

#104 - Crash when running Colab demo from https://tinyurl.com/GLMsingle-demo

Issue - State: closed - Opened by mkmohangb about 1 year ago - 2 comments

#103 - changes to zerodiv.py causing errors

Issue - State: closed - Opened by maggiemae13 about 1 year ago - 1 comment

#102 - fix calcbadness using special case for zero divisions.

Pull Request - State: closed - Opened by iancharest about 1 year ago - 1 comment

#101 - How to use extraregressors

Issue - State: closed - Opened by zieranna about 1 year ago - 4 comments

#100 - fix for calcbadness and chunking

Pull Request - State: closed - Opened by iancharest about 1 year ago - 2 comments

#99 - Added dtype='object' to chunking.py

Pull Request - State: closed - Opened by ashleymalkin about 1 year ago

#98 - debug calcbadness.py for numpy versions >= 1.24.x

Pull Request - State: closed - Opened by jacob-prince about 1 year ago
Labels: bug

#97 - Discussion

Issue - State: open - Opened by smazurchuk about 1 year ago - 4 comments

#96 - How to build design matrix?

Issue - State: closed - Opened by Cupid777 over 1 year ago - 7 comments

#95 - Different stimdur for different conditions

Issue - State: closed - Opened by yqliu9240 over 1 year ago - 2 comments

#94 - Activations outside the brain

Issue - State: open - Opened by jungtak05 over 1 year ago - 1 comment

#93 - Use round(L/2) for a maxpolydeg

Issue - State: closed - Opened by jungtak05 over 1 year ago - 2 comments

#91 - error in GLMestimatesingletrial.m

Issue - State: open - Opened by khazarAhmadi over 1 year ago - 3 comments

#90 - problems with example1.ipynb

Issue - State: closed - Opened by m4liao over 1 year ago - 15 comments

#88 - "prepare model outputs" section of glm_estimatemodel.py does not exist for hrfmodel = 'fir'

Issue - State: closed - Opened by jacob-prince over 1 year ago
Labels: bug

#87 - add diagnostics, add warning for trials near end of run, provide desi…

Pull Request - State: closed - Opened by kendrickkay over 1 year ago - 3 comments
Labels: enhancement

#86 - Decomposing condition into subconditions via design matrix

Issue - State: closed - Opened by andreifoldes over 1 year ago - 3 comments

#85 - Full decomposition of time-series fit

Issue - State: open - Opened by kendrickkay over 1 year ago
Labels: enhancement

#83 - Trials with different durations

Issue - State: closed - Opened by miladmozafari almost 2 years ago - 3 comments

#82 - Residuals for Type B models

Issue - State: open - Opened by andreifoldes almost 2 years ago - 1 comment
Labels: enhancement

#76 - using existing code for obtaining predicted time series from estimated betas in the model outputs

Issue - State: closed - Opened by vassiki about 2 years ago - 3 comments

#75 - fix for a bug when multiple runs were used in a test set for the cros…

Pull Request - State: closed - Opened by iancharest about 2 years ago

#74 - bug fix for extra_reg check, fixes #67

Pull Request - State: closed - Opened by iancharest about 2 years ago - 1 comment

#72 - Poor results on "Deep image reconstruction" dataset.

Issue - State: closed - Opened by efirdc over 2 years ago - 8 comments

#71 - How to enable one model only instead of getting trial estimates for the four models?

Issue - State: closed - Opened by Aya-Khalaf over 2 years ago - 1 comment

#70 - ValueError in fracridge.py

Issue - State: closed - Opened by Aya-Khalaf over 2 years ago - 3 comments

#69 - Fixes two errors when using picksubset

Pull Request - State: closed - Opened by LukasNeugebauer over 2 years ago

#68 - AttributeError: 'tuple' object has no attribute 'reshape'

Issue - State: closed - Opened by LukasNeugebauer over 2 years ago - 2 comments

#67 - ValueError when fitting GLMsingle with 'extra_regressors' added

Issue - State: closed - Opened by HugoSix over 2 years ago - 1 comment
Labels: bug

#66 - GLMsingle does not produce figures in desired output folder (or at all)

Issue - State: closed - Opened by ramroomh over 2 years ago - 3 comments
Labels: bug

#65 - Install scikit-learn

Pull Request - State: closed - Opened by arokem over 2 years ago

#64 - example illustrating data preprocessing of fMRIprep outputs for use i…

Pull Request - State: open - Opened by ramroomh over 2 years ago

#63 - IndexError after warning: too big, so taking a subset

Issue - State: closed - Opened by ramroomh over 2 years ago - 2 comments
Labels: bug

#60 - Additional example scripts (for fancy features?)

Issue - State: open - Opened by kendrickkay over 2 years ago - 5 comments
Labels: enhancement

#59 - Make post-hoc analyses of beta weights easier on the user?

Issue - State: open - Opened by kendrickkay over 2 years ago - 6 comments
Labels: enhancement

#58 - Give user some helpful reports on their design matrix?

Issue - State: closed - Opened by kendrickkay over 2 years ago - 3 comments
Labels: enhancement

#57 - Save options to the file outputs?

Issue - State: closed - Opened by kendrickkay over 2 years ago - 5 comments
Labels: enhancement

#56 - Trials at very end of run cause singularity problems

Issue - State: open - Opened by kendrickkay over 2 years ago - 5 comments
Labels: enhancement

#55 - updates to findtailthreshold.py to match matlab debug

Pull Request - State: closed - Opened by jacob-prince over 2 years ago - 1 comment

#54 - findtailthreshold robustness issues

Issue - State: closed - Opened by kendrickkay over 2 years ago - 2 comments

#53 - [wishlist] flag allowing users to output condition-wise beta estimates rather than single-trial estimates?

Issue - State: closed - Opened by jacob-prince over 2 years ago - 4 comments
Labels: enhancement

#51 - How to handle no crossing of 0.5 detected error?

Issue - State: closed - Opened by cnwangy over 2 years ago - 6 comments

#50 - Handling condition onsets that are not aligned with TRs

Issue - State: closed - Opened by efirdc over 2 years ago - 2 comments

#49 - (python) make fracridge/GLMsingle compatible with sklearn 1.0.x

Issue - State: closed - Opened by jacob-prince over 2 years ago - 6 comments
Labels: enhancement, question

#48 - need to regenerate python example scripts since fig output bug was fixed

Issue - State: closed - Opened by jacob-prince over 2 years ago - 2 comments
Labels: bug

#47 - FIR modeling

Issue - State: closed - Opened by jacob-prince over 2 years ago - 2 comments
Labels: enhancement

#46 - [WIP][ENH] add Dockerfile for python version og GLM single

Pull Request - State: open - Opened by Remi-Gau over 2 years ago - 1 comment

#45 - [DOC] Add sphinx documentation and serve on read the docs

Pull Request - State: closed - Opened by Remi-Gau over 2 years ago - 8 comments

#44 - [INFRA] Python test automation

Pull Request - State: open - Opened by Remi-Gau over 2 years ago - 6 comments