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GitHub / csvoss/syndra issues and pull requests

#37 - Fix `pip install syndra`

Issue - State: open - Opened by csvoss almost 8 years ago - 5 comments

#36 - Fix INDRA integration to work with new engine

Issue - State: open - Opened by csvoss almost 8 years ago

#35 - Extra functionality for refinements over labels

Issue - State: open - Opened by csvoss almost 8 years ago
Labels: enhancement

#34 - More features in structure.py and predicate.py

Issue - State: closed - Opened by csvoss almost 8 years ago - 1 comment

#33 - Create boilerplate for library.py

Issue - State: closed - Opened by csvoss almost 8 years ago - 1 comment

#32 - Make this a pip-installable package

Issue - State: closed - Opened by csvoss almost 8 years ago - 1 comment

#31 - Fix tests to work with slightly-changed API

Issue - State: closed - Opened by csvoss almost 8 years ago - 2 comments
Labels: bug

#30 - Change Node to be an enum

Issue - State: closed - Opened by csvoss almost 8 years ago - 1 comment
Labels: bug

#29 - Feature idea: print models with Kappaesque syntax

Issue - State: open - Opened by csvoss almost 8 years ago - 2 comments
Labels: enhancement

#28 - Guide for integrating Syndra with new KRs

Issue - State: open - Opened by csvoss almost 8 years ago
Labels: enhancement

#27 - Example workflow for using Syndra

Issue - State: closed - Opened by csvoss almost 8 years ago - 1 comment
Labels: enhancement

#26 - Stable API for Syndra, with documentation

Issue - State: closed - Opened by csvoss almost 8 years ago - 3 comments
Labels: enhancement

#25 - Solve Occam's Razor problem

Issue - State: closed - Opened by csvoss almost 8 years ago - 2 comments
Labels: bug

#24 - Debug system which should produce phosphorylation rule

Issue - State: closed - Opened by csvoss almost 8 years ago - 5 comments

#22 - Causality demo with Walter's example

Issue - State: open - Opened by csvoss almost 8 years ago
Labels: enhancement

#21 - INDRA updates

Pull Request - State: closed - Opened by bgyori about 8 years ago - 2 comments

#20 - Fix importing of INDRA dependencies

Issue - State: closed - Opened by csvoss about 8 years ago - 6 comments

#19 - More more tests!

Issue - State: closed - Opened by csvoss over 8 years ago

#18 - More tests!

Issue - State: closed - Opened by csvoss over 8 years ago - 1 comment

#17 - Write abstract for Masterworks by March 29

Issue - State: closed - Opened by csvoss over 8 years ago

#16 - Re-check atomic_predicate.py

Issue - State: closed - Opened by csvoss over 8 years ago

#15 - Replace higher-order functions with functions over arrays

Issue - State: closed - Opened by csvoss over 8 years ago - 1 comment

#14 - Thesis outline

Issue - State: closed - Opened by csvoss over 8 years ago - 3 comments

#13 - Implement converting z3 models into nice manageable Python set-like objects

Issue - State: closed - Opened by csvoss over 8 years ago - 1 comment

#12 - Implement Forall and Exists in predicate.py

Issue - State: closed - Opened by csvoss over 8 years ago - 1 comment

#11 - Implement a system to manage labels intelligently

Issue - State: closed - Opened by csvoss over 8 years ago - 3 comments

#10 - Create demo-explanation for PI meeting

Issue - State: closed - Opened by csvoss over 8 years ago

#7 - Additional macros (policies)

Issue - State: closed - Opened by csvoss over 8 years ago - 2 comments

#6 - First stab at a macro (policy): macro for "A binds B"

Issue - State: closed - Opened by csvoss over 8 years ago - 2 comments

#5 - Get private work wiki up and running

Issue - State: closed - Opened by jeanqasaur over 8 years ago - 1 comment
Labels: wontfix

#4 - Meet with KR and INDRA people about current state of things

Issue - State: closed - Opened by jeanqasaur over 8 years ago - 1 comment

#3 - Bare-bones draft

Issue - State: closed - Opened by jeanqasaur over 8 years ago - 2 comments

#2 - First stab at PySB->Kappa translation

Issue - State: closed - Opened by jeanqasaur over 8 years ago
Labels: wontfix

#1 - First stab at PySB grammar

Issue - State: closed - Opened by jeanqasaur over 8 years ago - 1 comment
Labels: wontfix