cscfi/beacon-python issues and pull requests

#100 - Auto-generated sample request

Issue - State: open - Opened by teemukataja over 5 years ago
Labels: enhancement

#99 - Fix for readthedocs

Pull Request - State: closed - Opened by blankdots over 5 years ago
Labels: bug

#98 - Implement GA4GH service info endpoint

Issue - State: closed - Opened by blankdots over 5 years ago - 1 comment
Labels: enhancement, ga4gh

#97 - Make sample queries more easily configurable

Pull Request - State: closed - Opened by MalinAhlberg over 5 years ago - 1 comment

#96 - Automating checks for security, documentation and more

Pull Request - State: closed - Opened by blankdots over 5 years ago - 1 comment
Labels: testing

#95 - Analyse Python code for common security issues

Issue - State: closed - Opened by blankdots over 5 years ago
Labels: testing

#94 - Design better integration test structure

Issue - State: closed - Opened by teemukataja over 5 years ago
Labels: enhancement, testing

#93 - Make matename work

Pull Request - State: closed - Opened by MalinAhlberg over 5 years ago - 1 comment
Labels: bug, testing

#92 - Tests and Docs updates

Pull Request - State: closed - Opened by blankdots over 5 years ago
Labels: testing, documentation

#91 - Simplify query for all and miss

Pull Request - State: closed - Opened by MalinAhlberg over 5 years ago
Labels: enhancement

#90 - Dont search all datasets when querying for a non-existing one

Pull Request - State: closed - Opened by MalinAhlberg over 5 years ago - 3 comments

#89 - Avoid coalesce on fields that need index search

Pull Request - State: closed - Opened by MalinAhlberg over 5 years ago
Labels: enhancement

#88 - Use enum for accessType

Pull Request - State: closed - Opened by MalinAhlberg over 5 years ago
Labels: enhancement

#87 - Allow implicit and explicit varianttype for mate

Pull Request - State: closed - Opened by blankdots over 5 years ago - 1 comment

#86 - Mate Fusion/Breakend and Handover Integration Tests

Issue - State: open - Opened by blankdots over 5 years ago
Labels: good first issue, testing

#85 - Adding support for mateName

Pull Request - State: closed - Opened by blankdots over 5 years ago
Labels: enhancement, release

#84 - Moved handover to extension module

Pull Request - State: closed - Opened by blankdots over 5 years ago
Labels: enhancement, documentation

#83 - Cleanup and update documentation

Pull Request - State: closed - Opened by blankdots over 5 years ago
Labels: documentation

#82 - Handover Docs

Pull Request - State: closed - Opened by teemukataja over 5 years ago
Labels: documentation

#81 - Add handover

Pull Request - State: closed - Opened by MalinAhlberg over 5 years ago - 1 comment
Labels: enhancement

#80 - Fix callCount

Pull Request - State: closed - Opened by teemukataja over 5 years ago
Labels: bug

#79 - Add coordinates to response

Pull Request - State: closed - Opened by teemukataja over 5 years ago - 1 comment
Labels: enhancement

#78 - Acknowledgements

Pull Request - State: closed - Opened by teemukataja over 5 years ago
Labels: documentation

#77 - (Proposal) Add start and end to response

Issue - State: closed - Opened by teemukataja over 5 years ago
Labels: enhancement

#76 - Fix typos and dated information in docs

Pull Request - State: closed - Opened by teemukataja over 5 years ago
Labels: documentation

#75 - Sanitize db query input

Pull Request - State: closed - Opened by blankdots over 5 years ago
Labels: bug

#74 - Update config

Pull Request - State: closed - Opened by teemukataja over 5 years ago

#73 - Code cleanup

Pull Request - State: closed - Opened by blankdots over 5 years ago
Labels: release, testing, documentation

#72 - Correct positions for startMin/Max

Pull Request - State: closed - Opened by MalinAhlberg over 5 years ago

#71 - JSON schema Start params

Pull Request - State: closed - Opened by blankdots over 5 years ago
Labels: bug, enhancement, testing

#70 - Add missing variantType MNP to schema

Pull Request - State: closed - Opened by teemukataja over 5 years ago - 1 comment
Labels: bug

#69 - Build and push latest dataloader to dockerhub

Pull Request - State: closed - Opened by teemukataja over 5 years ago

#68 - Unit test acess resolution function

Issue - State: closed - Opened by blankdots almost 6 years ago
Labels: good first issue, testing

#67 - Dataloader image build on merge to master as stage on Travis

Issue - State: closed - Opened by blankdots almost 6 years ago
Labels: good first issue

#66 - Readable docs

Pull Request - State: closed - Opened by blankdots almost 6 years ago
Labels: documentation

#65 - Addressing unproper del and ins

Pull Request - State: closed - Opened by blankdots almost 6 years ago
Labels: bug

#64 - Optimise init load in DB for parsing VCF file

Pull Request - State: closed - Opened by blankdots almost 6 years ago
Labels: enhancement

#63 - Add Required 401 header

Pull Request - State: closed - Opened by blankdots almost 6 years ago
Labels: enhancement

#62 - beacon_init optimisation

Pull Request - State: closed - Opened by teemukataja almost 6 years ago
Labels: bug, performance

#61 - More integration tests

Pull Request - State: closed - Opened by teemukataja almost 6 years ago
Labels: testing, documentation

#60 - Missing WWW-Authenticate in 401

Issue - State: closed - Opened by blankdots almost 6 years ago
Labels: enhancement, good first issue

#59 - Adding Controlled permissions

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#58 - Hotfix for assemblyId

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#57 - `assemblyId` from query is not used

Issue - State: closed - Opened by MalinAhlberg almost 6 years ago - 1 comment
Labels: bug

#56 - (Investigate) Support for mateName for fusion

Issue - State: closed - Opened by blankdots almost 6 years ago - 2 comments
Labels: enhancement

#55 - Allow schema names in db queries

Pull Request - State: closed - Opened by MalinAhlberg almost 6 years ago
Labels: enhancement

#54 - #53 fix connection error caused by special characters

Pull Request - State: closed - Opened by teemukataja almost 6 years ago
Labels: bug

#53 - Special characters in database password

Issue - State: closed - Opened by MalinAhlberg almost 6 years ago
Labels: bug

#52 - Hotfix for MISS query

Pull Request - State: closed - Opened by teemukataja almost 6 years ago - 1 comment
Labels: bug

#51 - Feature/optionalsamples

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#50 - Run using gunicorn

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#49 - Change base coordinate system

Pull Request - State: closed - Opened by teemukataja almost 6 years ago

#48 - OAuth2 configuration

Pull Request - State: closed - Opened by teemukataja almost 6 years ago - 1 comment

#47 - Documentation ftw

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#46 - New means of calculating freq and counts

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#45 - Update db schema and docs

Pull Request - State: closed - Opened by blankdots almost 6 years ago
Labels: performance

#44 - Update documentation

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#43 - 1000 Genomes container

Pull Request - State: closed - Opened by teemukataja almost 6 years ago

#42 - Implement General OAuth2 support

Issue - State: closed - Opened by blankdots almost 6 years ago - 3 comments
Labels: enhancement

#41 - Dataset init container

Issue - State: closed - Opened by blankdots almost 6 years ago - 1 comment
Labels: deploy

#40 - Tests for Public vs Registered vs Controlled datasets

Issue - State: closed - Opened by blankdots almost 6 years ago
Labels: good first issue, testing

#39 - DB Retry policy

Issue - State: closed - Opened by blankdots almost 6 years ago - 1 comment
Labels: wontfix

#38 - (Investigate) Support for handover method for data access

Issue - State: closed - Opened by blankdots almost 6 years ago - 6 comments
Labels: enhancement

#37 - Feature/config

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#36 - Import config from file

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#35 - Improve beacon API specification coverage

Pull Request - State: closed - Opened by blankdots almost 6 years ago
Labels: enhancement, performance

#34 - Add config file option

Pull Request - State: closed - Opened by blankdots almost 6 years ago

#33 - Rollback

Pull Request - State: closed - Opened by teemukataja about 6 years ago

#32 - Provide beacon info from config file/var

Issue - State: closed - Opened by blankdots about 6 years ago - 2 comments
Labels: enhancement, good first issue

#31 - Feature/cors

Pull Request - State: closed - Opened by teemukataja about 6 years ago

#30 - (Investigate) Support for GA4GH Consent Codes

Issue - State: open - Opened by blankdots about 6 years ago - 1 comment
Labels: enhancement, ga4gh

#29 - (Investigate) Support Automatable Discovery and Access Matrix (ADA-M)

Issue - State: open - Opened by blankdots about 6 years ago
Labels: enhancement

#28 - Support CORS

Issue - State: closed - Opened by blankdots about 6 years ago - 2 comments
Labels: enhancement

#27 - (better) Handle Public vs Registered vs Controlled datasets

Issue - State: closed - Opened by blankdots about 6 years ago - 1 comment
Labels: enhancement

#26 - Implement wildcard differentiation and remove array from info key

Pull Request - State: closed - Opened by teemukataja about 6 years ago

#25 - Remove array from info key

Issue - State: closed - Opened by teemukataja about 6 years ago

#24 - Differentiate wildcard results

Issue - State: closed - Opened by blankdots about 6 years ago
Labels: enhancement

#23 - Add Integration tests

Issue - State: closed - Opened by blankdots about 6 years ago
Labels: testing

#22 - Small Fixes

Pull Request - State: closed - Opened by blankdots about 6 years ago

#21 - Ommit packages for readthedocs

Pull Request - State: closed - Opened by blankdots about 6 years ago

#20 - Support all variant types

Issue - State: closed - Opened by teemukataja about 6 years ago
Labels: enhancement

#19 - Optmize VCF file parsing and inserting into database

Issue - State: closed - Opened by blankdots about 6 years ago - 1 comment
Labels: performance

#18 - Parse gzip VCF files

Issue - State: closed - Opened by blankdots about 6 years ago
Labels: enhancement, performance

#17 - Update issue templates

Pull Request - State: closed - Opened by blankdots about 6 years ago

#16 - (Investigate) Web Server caching performance

Issue - State: closed - Opened by blankdots about 6 years ago - 3 comments
Labels: performance

#15 - Async beacon

Pull Request - State: closed - Opened by blankdots about 6 years ago
Labels: release

#14 - HTTPS support

Issue - State: closed - Opened by blankdots about 6 years ago - 1 comment

#13 - Database Schema

Issue - State: closed - Opened by blankdots about 6 years ago
Labels: enhancement

#12 - VCF to ProstgreSQL

Issue - State: closed - Opened by blankdots about 6 years ago
Labels: enhancement

#11 - Publish docs at readthedocs

Issue - State: closed - Opened by blankdots about 6 years ago

#10 - Deployment Bootstrap

Issue - State: closed - Opened by blankdots over 6 years ago
Labels: deploy

#9 - DB operations into a submodule

Issue - State: closed - Opened by blankdots over 6 years ago

#8 - Fix requirements

Issue - State: closed - Opened by blankdots over 6 years ago - 1 comment
Labels: bug

#7 - Tox Automation and Travis + Coveralls Integration

Issue - State: closed - Opened by blankdots over 6 years ago
Labels: testing

#6 - Project Structure and Associated Documentation

Issue - State: closed - Opened by blankdots over 6 years ago

#5 - Unit Tests Refactoring

Issue - State: closed - Opened by blankdots over 6 years ago
Labels: testing

#4 - Style Guide Formatting

Issue - State: closed - Opened by blankdots over 6 years ago - 1 comment
Labels: testing

#3 - fix

Pull Request - State: closed - Opened by kasperkeinanen over 6 years ago

#2 - Dev oauth2

Pull Request - State: closed - Opened by kasperkeinanen over 6 years ago

#1 - Dev

Pull Request - State: closed - Opened by kasperkeinanen over 6 years ago

GitHub / cscfi/beacon-python issues and pull requests