Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / cryoem-uoft/cryosparc-tools issues and pull requests

#103 - fix: correct stream implementation when dataset is empty

Pull Request - State: open - Opened by nfrasser 8 days ago - 2 comments

#102 - Release v4.6.1

Pull Request - State: closed - Opened by nfrasser 15 days ago - 1 comment

#101 - fix: prevent invalid external job input/output group names

Pull Request - State: closed - Opened by nfrasser 15 days ago - 1 comment

#100 - fix: prevent queueing or killing external jobs

Pull Request - State: closed - Opened by nfrasser 19 days ago - 1 comment

#99 - ci: python 3.13 support

Pull Request - State: closed - Opened by nfrasser 28 days ago - 1 comment

#98 - potential typo in doc string

Pull Request - State: closed - Opened by i7878 about 1 month ago - 1 comment

#97 - CI: build fixes for v4.6

Pull Request - State: closed - Opened by nfrasser 2 months ago - 1 comment

#96 - Release v4.6.0

Pull Request - State: closed - Opened by nfrasser 2 months ago - 1 comment

#95 - chore: update pre-commit deps

Pull Request - State: closed - Opened by nfrasser 2 months ago - 1 comment

#94 - Fix: correct pre-commit lint config

Pull Request - State: closed - Opened by nfrasser 3 months ago - 1 comment

#93 - Refactor: Dataset load memory optimizations

Pull Request - State: closed - Opened by nfrasser 3 months ago - 3 comments

#92 - Feat: add Chimera bild file to allowed text formats

Pull Request - State: closed - Opened by nfrasser 4 months ago - 1 comment

#91 - Release v4.5.1

Pull Request - State: closed - Opened by nfrasser 5 months ago - 1 comment

#90 - Numpy 2.0 support

Pull Request - State: closed - Opened by nfrasser 5 months ago - 1 comment

#89 - Fix: add v4.5 data types

Pull Request - State: closed - Opened by nfrasser 6 months ago - 1 comment

#88 - Issue on page /examples/hi-res-2d-classes.html

Issue - State: open - Opened by k-spoth 7 months ago

#87 - CI: Windows and Artifact upload build fixes

Pull Request - State: closed - Opened by nfrasser 7 months ago - 1 comment

#86 - Release v4.5.0

Pull Request - State: closed - Opened by nfrasser 7 months ago - 1 comment

#85 - Fix: revert @property decorator for project/job dir

Pull Request - State: closed - Opened by nfrasser 7 months ago - 2 comments

#84 - Fix: correct Dataset.descr() implementation

Pull Request - State: closed - Opened by nfrasser 7 months ago - 1 comment

#83 - Refactor: Dataset interface updates for future improved job I/O

Pull Request - State: closed - Opened by nfrasser 8 months ago - 1 comment

#82 - Fix: keep fields when unionizing empty datasets

Pull Request - State: closed - Opened by nfrasser 8 months ago - 1 comment

#81 - Fix: keep fields when appending empty datasets

Pull Request - State: closed - Opened by nfrasser 8 months ago - 1 comment

#80 - Fix: raise explicit memory error when dataset allocation fails

Pull Request - State: closed - Opened by nfrasser 8 months ago - 2 comments

#79 - Feat: add cluster_vars to job.queue

Pull Request - State: closed - Opened by nfrasser 8 months ago - 1 comment

#78 - chore: run linter

Pull Request - State: closed - Opened by nfrasser 9 months ago - 1 comment

#77 - Feat(dataset): use 16 bits for dataset shapes instead of 8

Pull Request - State: closed - Opened by nfrasser 9 months ago - 1 comment

#76 - CI: update actions to use Node.js 20

Pull Request - State: closed - Opened by nfrasser 9 months ago - 1 comment

#75 - Docs: update contribution guidelines

Pull Request - State: closed - Opened by nfrasser 9 months ago - 1 comment

#74 - SPM Job changes

Pull Request - State: closed - Opened by Puratinamu 10 months ago - 1 comment

#73 - Setting costum cluster submission variables

Issue - State: closed - Opened by DerLorenz 10 months ago - 1 comment

#72 - Chore: Replace black with ruff format

Pull Request - State: closed - Opened by nfrasser 10 months ago - 2 comments

#71 - Generalize 3dflex custom traj to >2 dimensions

Pull Request - State: closed - Opened by PlethoraChutney 11 months ago - 1 comment

#70 - Fix broken code in custom latent trajectory example

Pull Request - State: closed - Opened by PlethoraChutney 11 months ago - 4 comments

#69 - Fix .dir() documentation examples

Pull Request - State: closed - Opened by PlethoraChutney 11 months ago - 1 comment

#68 - Fix: Type issues for latest Pyright

Pull Request - State: closed - Opened by nfrasser 12 months ago - 1 comment

#67 - Fix: API and docs updates to allow copying/linking outside job directory

Pull Request - State: closed - Opened by nfrasser 12 months ago - 1 comment

#66 - Release v4.4.1

Pull Request - State: closed - Opened by nfrasser 12 months ago - 1 comment

#65 - Project.dir and Job.dir should be properties

Pull Request - State: closed - Opened by PlethoraChutney 12 months ago - 1 comment

#64 - Request: Token-based authentication

Issue - State: open - Opened by ccgauvin94 12 months ago - 1 comment

#62 - Release v4.4

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#61 - Chore: update pyright config for independent development

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#60 - Feat: Improved Command error handling and slots errors documentation

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 2 comments

#59 - Chore: Remove unused "starting" job status

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#58 - Docs: show warning when connecting to incompatible CryoSPARC

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#57 - Chore: Add pre-commit hooks

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#55 - Fix: only ever stream bytes from Dataset.stream()

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#54 - CI: Python 3.11 and 3.12 package builds

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#53 - Fix(Dataset): Include `stddef.h` in forward declaration section

Pull Request - State: closed - Opened by arulths about 1 year ago - 1 comment

#52 - Chore: Show path of dataset when exception encountered during loading

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#51 - Create Live Session

Issue - State: closed - Opened by ccgauvin94 about 1 year ago - 1 comment

#50 - Feat: retry command requests when URLError is raised

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#49 - Docs: Additional example updates

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 2 comments

#48 - Release v4.3.1

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#47 - Docs: include note about python virtual environment

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#46 - Fix: ensure python object references decremented

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#45 - Fix: upload overwrite query param

Pull Request - State: closed - Opened by nfrasser about 1 year ago - 1 comment

#44 - Eliminate some warnings

Pull Request - State: closed - Opened by hsnyder over 1 year ago - 1 comment

#43 - Fix: Make job queue method lane argument optional

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 1 comment

#42 - Fix: prevent dellocated memory access

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 1 comment

#41 - update instruction

Pull Request - State: closed - Opened by i7878 over 1 year ago - 1 comment

#40 - Feat: Integrate Plausible Analytics [T-2955]

Pull Request - State: closed - Opened by suhaildawood over 1 year ago - 1 comment

#39 - v4.3 build fixes

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 1 comment

#38 - tiny typo corrected

Pull Request - State: closed - Opened by i7878 over 1 year ago - 3 comments

#37 - Fix some memory bugs in dset_setstr and to_cstrs

Pull Request - State: closed - Opened by hsnyder over 1 year ago - 1 comment

#36 - Feat: Dataset native extend/append methods

Pull Request - State: open - Opened by nfrasser over 1 year ago - 1 comment

#35 - How to create a new project?

Issue - State: closed - Opened by RandyRomero over 1 year ago - 3 comments
Labels: documentation, enhancement

#34 - Refactor: Remove snappy dependency, faster C string API and streaming

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 1 comment

#33 - Fix: capitalize HTTP method names

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 2 comments

#32 - Release v4.3

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 1 comment

#31 - Fix: extend CommandClient.Error from Exception instead of BaseException

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 1 comment

#30 - Fix: correctly catch command request timeout

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 1 comment

#29 - load_outputs method does not handle partially complete jobs gracefully

Issue - State: closed - Opened by craigyk over 1 year ago - 2 comments

#28 - Docs: Extensive Workflow Example

Pull Request - State: closed - Opened by nfrasser over 1 year ago - 5 comments

#25 - docs: update TCP port requirement

Pull Request - State: closed - Opened by kttn8769 over 1 year ago - 1 comment

#24 - feat: Add ability to not return last batch in `make_batches`

Pull Request - State: closed - Opened by arulths over 1 year ago - 2 comments

#23 - chore: python 3.10

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#22 - feat: async stream interface for dataset

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#21 - Release v4.2.0

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#20 - fix: correct connect argument handling in create_job

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#19 - Release v4.1.3

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#18 - fix: generation counter overflow on dataset slot

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#17 - fix: include created_by_user_id with create_job call

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#16 - chore: Specialize Makefile for CryoSPARC

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#15 - Release v4.1.2 (tools)

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#14 - docs: fix to Job.connect example

Pull Request - State: closed - Opened by mcleanm almost 2 years ago - 1 comment

#13 - docs: small issues encountered during browsing

Pull Request - State: closed - Opened by wtempel almost 2 years ago - 1 comment

#12 - feat: Add support for command_rtp

Pull Request - State: closed - Opened by KiSchnelle almost 2 years ago - 4 comments

#11 - pip install -e ".[dev]" only works up to python <= 3.10

Issue - State: closed - Opened by KiSchnelle almost 2 years ago - 1 comment
Labels: bug

#10 - Release v4.1.1

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#9 - fix: correct MASK_IDX bitshift in C dataset

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#8 - fix: match cython types to C ones

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#7 - refactor: better vercel deployment config

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#6 - v4.1.0

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment

#5 - Dataset methods to convert between C and Python strings

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 2 comments

#4 - fix: correct sdist build during publish

Pull Request - State: closed - Opened by nfrasser almost 2 years ago - 1 comment