Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / cryoem/eman2 issues and pull requests

#574 - 2.99.57 Version ctest test failed

Issue - State: open - Opened by simon28li 5 months ago - 5 comments

#572 - E2gmm_model_fit.py failed to run

Issue - State: open - Opened by AAUHFZ 5 months ago - 2 comments

#571 - RuntimeError: FileAccessException at ...libEM/io/hdfio2.cpp

Issue - State: open - Opened by tiborauer 7 months ago - 9 comments

#570 - Improve the e2tomoseg_convnet.py and make training faster

Pull Request - State: open - Opened by ZhenHuangLab 10 months ago

#569 - Installation through conda

Issue - State: open - Opened by onnonym about 1 year ago - 1 comment
Labels: bug

#568 - instructions to install to existing anaconda

Issue - State: open - Opened by kamanlsu over 1 year ago - 5 comments

#567 - substitution for runpar in eman2

Issue - State: open - Opened by Qiangong2 almost 2 years ago - 3 comments

#566 - Implement grouping mechanism in emannotate2d widget

Pull Request - State: closed - Opened by landang14 almost 2 years ago

#565 - Dependency installation issue

Issue - State: open - Opened by mcleanm almost 2 years ago - 1 comment

#564 - remove git header

Pull Request - State: closed - Opened by landang14 almost 2 years ago

#563 - add binary tab

Pull Request - State: closed - Opened by landang14 almost 2 years ago

#562 - Add tomogram annotate program

Pull Request - State: closed - Opened by landang14 almost 2 years ago

#561 - Update glutil.cpp

Pull Request - State: closed - Opened by landang14 almost 2 years ago

#560 - cannot find fftw3d and fftw3f header files.

Issue - State: open - Opened by Hik289 almost 2 years ago - 13 comments

#559 - Add dose-weighting parameters for MotionCor2

Pull Request - State: closed - Opened by ccgauvin94 about 2 years ago

#557 - Explicit int conversion in e2projectmanager.py widget

Pull Request - State: closed - Opened by ccgauvin94 about 2 years ago

#555 - Update emannotate2d.py

Pull Request - State: closed - Opened by landang14 over 2 years ago

#554 - Update emannotate2d.py

Pull Request - State: closed - Opened by landang14 over 2 years ago

#553 - Update emannotate2d.py and glutil.cpp

Pull Request - State: closed - Opened by landang14 over 2 years ago

#552 - unstacking priority

Pull Request - State: closed - Opened by jkaelber over 2 years ago - 2 comments

#551 - RuntimeError: std::exception caused by xform_align_nbest

Issue - State: open - Opened by lyw8120 over 2 years ago - 1 comment

#550 - final_iter wasn't defined

Pull Request - State: closed - Opened by taputechnic over 2 years ago

#549 - e2ctf_auto in lores mode does not produce particle sets

Issue - State: open - Opened by kvr2007 over 2 years ago

#548 - Volume filter for template matching

Pull Request - State: closed - Opened by thorstenwagner over 2 years ago - 4 comments

#547 - Fix default boxsize for e2spt_tempmatch.py

Pull Request - State: closed - Opened by thorstenwagner over 2 years ago

#546 - Not defined variable in e2spt_tempmatch.py

Issue - State: open - Opened by thorstenwagner over 2 years ago - 4 comments

#545 - typos

Pull Request - State: closed - Opened by taputechnic over 2 years ago

#544 - Add segmentation tab

Pull Request - State: closed - Opened by landang14 over 2 years ago

#543 - corner cases of Transform class

Issue - State: open - Opened by wjiang almost 3 years ago - 7 comments

#542 - Tapu signalsubtract

Pull Request - State: closed - Opened by taputechnic about 3 years ago

#541 - Starfile integration

Pull Request - State: open - Opened by aali1987 over 3 years ago

#540 - Remove LFS check from CMakeLists.txt

Pull Request - State: open - Opened by aohnsc over 3 years ago

#539 - Fix python2 to python3 conversion error

Pull Request - State: closed - Opened by mstabrin over 3 years ago

#538 - Isac filament

Pull Request - State: open - Opened by mstabrin over 3 years ago

#537 - Relion tool integration

Pull Request - State: closed - Opened by aali1987 over 3 years ago - 3 comments

#536 - Image dir problem

Pull Request - State: closed - Opened by thorstenwagner over 3 years ago

#535 - Update sp_rewindow.py

Pull Request - State: closed - Opened by aali1987 over 3 years ago

#534 - Parser refactor

Pull Request - State: closed - Opened by sludtke42 over 3 years ago

#533 - Wout changes

Pull Request - State: closed - Opened by aali1987 almost 4 years ago

#532 - Update sp_sphire2relion.py

Pull Request - State: closed - Opened by aali1987 almost 4 years ago

#531 - Update sp_relion2sphire.py

Pull Request - State: closed - Opened by aali1987 almost 4 years ago

#530 - new programs

Pull Request - State: closed - Opened by taputechnic almost 4 years ago

#529 - Update sphire2relion GUI page

Pull Request - State: closed - Opened by mstabrin almost 4 years ago

#528 - Update sp_pipe.py

Pull Request - State: closed - Opened by mstabrin almost 4 years ago

#527 - Fix conversion for helical track length

Pull Request - State: closed - Opened by mstabrin almost 4 years ago

#526 - Port Gauss picker to e2boxer from e2boxer_old

Pull Request - State: closed - Opened by kvr2007 almost 4 years ago - 1 comment

#525 - additional changes for 2.9 release

Pull Request - State: closed - Opened by taputechnic almost 4 years ago

#524 - Update sp_ctf_refine_plotting.py

Pull Request - State: closed - Opened by aali1987 almost 4 years ago

#523 - Update sp_ctf_refine_plotting.py

Pull Request - State: closed - Opened by aali1987 almost 4 years ago

#522 - Update sp_ctf_refine_plotting.py in master branch

Pull Request - State: closed - Opened by aali1987 almost 4 years ago

#521 - Add Topaz tab to e2boxer

Pull Request - State: closed - Opened by spamrick about 4 years ago - 1 comment

#520 - Update emdata_sphire.cpp

Pull Request - State: closed - Opened by aali1987 about 4 years ago

#519 - Signal-subtraction for release 2.9

Pull Request - State: closed - Opened by taputechnic about 4 years ago

#518 - Modified FSC for release candidate 2.9

Pull Request - State: closed - Opened by taputechnic about 4 years ago

#517 - Incorporated modified FSC in to GUI

Pull Request - State: closed - Opened by taputechnic about 4 years ago

#516 - signal-subtraction files

Pull Request - State: closed - Opened by taputechnic about 4 years ago

#515 - Update emdata_sphire.cpp

Pull Request - State: closed - Opened by aali1987 about 4 years ago - 2 comments

#514 - Release 2.9

Pull Request - State: closed - Opened by shadowwalkersb about 4 years ago - 5 comments

#513 - Fix relion2sphire

Pull Request - State: closed - Opened by mstabrin about 4 years ago

#512 - How to determine pixel width (Angstrom) when calculating FSC using e2proc3d?

Issue - State: closed - Opened by ZhidongYang about 4 years ago - 2 comments

#511 - Update sp_pipe.py

Pull Request - State: closed - Opened by mstabrin about 4 years ago

#510 - Update sp_pipe.py for centered filaments

Pull Request - State: closed - Opened by mstabrin about 4 years ago

#509 - Fix helical meridien

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#508 - Png binary

Pull Request - State: closed - Opened by mstabrin over 4 years ago - 4 comments

#507 - Fix sphire2relion link when stack creation

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#506 - Catch Attribute error of QDragEnterEvent

Pull Request - State: closed - Opened by mstabrin over 4 years ago - 6 comments

#505 - Adjust regex to match at the beginning of the file

Pull Request - State: closed - Opened by mstabrin over 4 years ago - 2 comments

#504 - prints warning rather than traceback error when BDB is write-protected

Pull Request - State: closed - Opened by taputechnic over 4 years ago - 3 comments

#503 - Status of tomo in devel?

Issue - State: closed - Opened by pconesa over 4 years ago - 4 comments

#502 - Add relion3 support

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#501 - [ci build] do sphire install on make install rather than make build

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#500 - [ci build] Use 24.1 in post scripts

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#499 - Sphire package

Pull Request - State: closed - Opened by thorstenwagner over 4 years ago

#498 - New release supporting recent boost.python

Issue - State: closed - Opened by ccoulombe over 4 years ago - 1 comment

#497 - Angdist plot update

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#496 - Fixed integer overflow in assign_groups()

Pull Request - State: closed - Opened by fabschon over 4 years ago

#494 - Catch value error in file content

Pull Request - State: closed - Opened by mstabrin over 4 years ago - 14 comments

#493 - replace file with open

Pull Request - State: closed - Opened by thorstenwagner over 4 years ago

#492 - added GPU ISAC to GUI

Pull Request - State: closed - Opened by taputechnic over 4 years ago

#491 - Use rindex instead of index to find the correct suffix

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#490 - replace file with open

Pull Request - State: closed - Opened by thorstenwagner over 4 years ago - 2 comments

#489 - change cinderella_predict_path

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#488 - add arguments and docs to EMData::write_images()

Pull Request - State: closed - Opened by sludtke42 over 4 years ago

#487 - changed dictionary-value and bytestring

Pull Request - State: closed - Opened by taputechnic over 4 years ago

#486 - add transform2d to sp_applications

Pull Request - State: closed - Opened by thorstenwagner over 4 years ago - 1 comment

#485 - Add xml file writing

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#484 - Change == and != case

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#483 - Replace is bytes by isinstance

Pull Request - State: closed - Opened by mstabrin over 4 years ago

#482 - Added * import for EMAN2

Pull Request - State: closed - Opened by taputechnic over 4 years ago

#481 - Submit command change

Pull Request - State: closed - Opened by thorstenwagner over 4 years ago - 2 comments

#480 - Version number update

Pull Request - State: closed - Opened by thorstenwagner over 4 years ago

#475 - issue_187: sp_variability - Missing sanity check for output extensions

Pull Request - State: closed - Opened by lucalusn over 4 years ago

#462 - Fix reference vs value errors in libpyTransform2

Pull Request - State: closed - Opened by jcbollinger almost 5 years ago

#456 - Cleanup old_div with literal floats

Pull Request - State: closed - Opened by shadowwalkersb almost 5 years ago

#432 - Update sp_isac2.py

Pull Request - State: closed - Opened by fabschon about 5 years ago

#426 - trilinear interpolation wasn't used everywhere

Pull Request - State: closed - Opened by taputechnic over 5 years ago - 1 comment