Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / crsl4/PhyloNetworks.jl issues and pull requests
#212 - documentation: workflow, badges, workshop link, ftest warnings
Pull Request -
State: closed - Opened by cecileane 4 months ago
- 5 comments
#211 - fix 2-cycle (parallel edges) bug in snaq
Pull Request -
State: closed - Opened by cecileane 5 months ago
#210 - 2-cycle (parallel edges) proposed in SNaQ
Issue -
State: closed - Opened by cecileane 6 months ago
- 1 comment
#209 - Fix for the slow but constant increase in memory usage
Pull Request -
State: closed - Opened by NathanKolbow 8 months ago
- 3 comments
#208 - MrBayer error
Issue -
State: closed - Opened by tsm-tsm 9 months ago
- 3 comments
#207 - fix bug: when deleting a hybrid edge leads to simplification of parallel edges at hybrid with 2 children
Pull Request -
State: closed - Opened by cecileane 9 months ago
- 1 comment
#206 - fix #201 and #205
Pull Request -
State: closed - Opened by cecileane 11 months ago
- 1 comment
#205 - fitdiscrete error with new String7 from CSV
Issue -
State: closed - Opened by crsl4 11 months ago
- 1 comment
#204 - The confusion of starting topology
Issue -
State: closed - Opened by zhangwenda0518 12 months ago
- 1 comment
#203 - Feedback on Detected EXCEPTION-HANDLING
Issue -
State: closed - Opened by zyue110026 about 1 year ago
#202 - CompatHelper: bump compat for NLopt to 1, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
#201 - infinite loop in `readTopologyLevel1`
Issue -
State: closed - Opened by NathanKolbow about 1 year ago
- 8 comments
#200 - for v0.16.2
Pull Request -
State: closed - Opened by cecileane over 1 year ago
- 1 comment
#199 - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] over 1 year ago
- 1 comment
#198 - Inheritance Probability Confidence Interval?
Issue -
State: closed - Opened by bfauskee over 1 year ago
- 2 comments
#197 - read nexus tree blocks: with translate tables and networks
Pull Request -
State: closed - Opened by cecileane over 1 year ago
- 2 comments
#196 - near v0.16.0
Pull Request -
State: closed - Opened by cecileane over 1 year ago
- 1 comment
#195 - CompatHelper: bump compat for StatsModels to 0.7, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] over 1 year ago
- 1 comment
#194 - Get rid of `Tableregressionmodel`
Pull Request -
State: closed - Opened by pbastide over 1 year ago
- 6 comments
#193 - Support extended Newick?
Issue -
State: closed - Opened by cossio over 1 year ago
- 7 comments
#192 - Ghost introgression
Issue -
State: closed - Opened by JohnsonStev over 1 year ago
- 4 comments
#191 - bootsnaq parallelization error
Issue -
State: open - Opened by crsl4 almost 2 years ago
Labels: bug
#190 - standardize and export getter names
Pull Request -
State: closed - Opened by cecileane almost 2 years ago
- 8 comments
#189 - CompatHelper: bump compat for Functors to 0.4, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] almost 2 years ago
- 1 comment
#188 - bug fix to read table of qCFs
Pull Request -
State: closed - Opened by cecileane about 2 years ago
- 1 comment
#187 - parametric EdgeT with vector of concrete node type
Pull Request -
State: closed - Opened by cecileane about 2 years ago
- 9 comments
#186 - better handling of 2-cycle at the root
Pull Request -
State: closed - Opened by cecileane about 2 years ago
- 1 comment
#185 - Get rid of `TableRegressionModel`
Issue -
State: closed - Opened by nalimilan about 2 years ago
- 1 comment
#184 - v0.15.2: redirect edges if re-rooting failed. new: shrinkedge!
Pull Request -
State: closed - Opened by cecileane about 2 years ago
- 1 comment
#183 - CompatHelper: bump compat for FASTX to 2, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] about 2 years ago
- 1 comment
#182 - bug fix for biconnected components
Pull Request -
State: closed - Opened by cecileane about 2 years ago
- 6 comments
#181 - removedegree2nodes! : option to keep the root
Pull Request -
State: closed - Opened by cecileane about 2 years ago
- 4 comments
#180 - Error when the network has negative or missing branches for phylolm
Pull Request -
State: closed - Opened by pbastide about 2 years ago
- 2 comments
#179 - Network with undefined branches makes phylolm fail
Issue -
State: closed - Opened by pbastide about 2 years ago
- 2 comments
#178 - CompatHelper: bump compat for Functors to 0.3, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 1 comment
#177 - newick parsing: handle negative edge lengths, comments
Pull Request -
State: closed - Opened by cecileane over 2 years ago
- 2 comments
#176 - readTopology with negative edge lengths
Issue -
State: closed - Opened by fogg-uw over 2 years ago
#175 - Update nulldeviance for models with no intercept
Pull Request -
State: closed - Opened by pbastide over 2 years ago
- 2 comments
#174 - CompatHelper: bump compat for StatsFuns to 1, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 2 comments
#173 - Fast read multi topology
Pull Request -
State: closed - Opened by gaballench over 2 years ago
- 6 comments
#172 - Project.toml, not REQUIRE
Pull Request -
State: closed - Opened by dmbates over 2 years ago
- 2 comments
#171 - added contributing file
Pull Request -
State: closed - Opened by crsl4 over 2 years ago
- 3 comments
#170 - Speed of `readMultiTopology` compared to `map` and `fmap` with large amount of trees
Issue -
State: closed - Opened by gaballench over 2 years ago
- 3 comments
#169 - CompatHelper: bump compat for CSV to 0.10, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
#168 - PhyloNetworks prevents BioSequences package upgrade
Issue -
State: closed - Opened by fpmenninger over 2 years ago
- 1 comment
#167 - CompatHelper: bump compat for BioSequences to 3, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 1 comment
#166 - Minor doc typo
Issue -
State: closed - Opened by crsl4 almost 3 years ago
- 1 comment
#165 - bug fix, for v0.14.2
Pull Request -
State: closed - Opened by cecileane almost 3 years ago
- 2 comments
#164 - CompatHelper: bump compat for CSV to 0.9, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] about 3 years ago
- 1 comment
#163 - CompatHelper: bump compat for "BioSymbols" to "5"
Pull Request -
State: closed - Opened by github-actions[bot] over 3 years ago
- 1 comment
#162 - Lambda models with individual variation
Issue -
State: open - Opened by claireh93 over 3 years ago
- 1 comment
#161 - CompatHelper: bump compat for "Distributions" to "0.25"
Pull Request -
State: closed - Opened by github-actions[bot] over 3 years ago
- 3 comments
#160 - migrate tests+doc from travis-ci to github actions
Pull Request -
State: closed - Opened by cecileane over 3 years ago
- 1 comment
#159 - CompatHelper: bump compat for "DataFrames" to "1.0"
Pull Request -
State: closed - Opened by github-actions[bot] over 3 years ago
- 2 comments
#158 - error during SNaQ score calculation: "strange qnet", "Bad Diamond I" and "qnet should have only one of the gammaz"
Issue -
State: open - Opened by cecileane over 3 years ago
#157 - TagBot trigger issue
Issue -
State: closed - Opened by JuliaTagBot over 3 years ago
- 14 comments
#156 - prep for v0.13.0; travis-ci.com migration; rm test broken by GLM v1.4
Pull Request -
State: closed - Opened by cecileane over 3 years ago
- 2 comments
#155 - performance suggestion make trees more type stable
Issue -
State: closed - Opened by oscardssmith over 3 years ago
- 5 comments
#154 - hybridBootstrapSupport error
Issue -
State: closed - Opened by smallfishcui over 3 years ago
- 13 comments
#153 - deleteleaf method bug
Issue -
State: closed - Opened by zyzvnnb almost 4 years ago
- 3 comments
#152 - PhyLiNC manual
Pull Request -
State: open - Opened by coraallensavietta almost 4 years ago
#151 - CompatHelper: bump compat for "StaticArrays" to "1.0"
Pull Request -
State: closed - Opened by github-actions[bot] almost 4 years ago
- 1 comment
#150 - CompatHelper: bump compat for "DataFrames" to "0.22"
Pull Request -
State: closed - Opened by github-actions[bot] almost 4 years ago
- 2 comments
#149 - CompatHelper: bump compat for "CSV" to "0.8"
Pull Request -
State: closed - Opened by github-actions[bot] almost 4 years ago
- 2 comments
#148 - fliphybrid root fix, nnidistance functions, PhyLiNC fixed network optimization
Pull Request -
State: open - Opened by coraallensavietta almost 4 years ago
- 2 comments
#147 - equal rates model fitdiscrete bug
Issue -
State: closed - Opened by coraallensavietta almost 4 years ago
- 1 comment
#146 - CompatHelper: bump compat for "Distributions" to "0.24"
Pull Request -
State: closed - Opened by github-actions[bot] almost 4 years ago
- 3 comments
#145 - Tree component functions
Pull Request -
State: closed - Opened by jingchengx almost 4 years ago
- 2 comments
#144 - Add tree_edge_components and updateroot! functions
Pull Request -
State: closed - Opened by jingchengx almost 4 years ago
- 3 comments
#143 - multiple alleles: bug in mapAllelesCFtable?
Issue -
State: closed - Opened by cecileane about 4 years ago
- 3 comments
#142 - Fix bug in backward likelihood calculation
Pull Request -
State: closed - Opened by coraallensavietta about 4 years ago
- 3 comments
#141 - Cannot precompile PhyloPlots
Issue -
State: closed - Opened by eckofoid about 4 years ago
- 1 comment
#140 - Extend phyloNetworklm to fit measurement-error models
Pull Request -
State: closed - Opened by bstkj about 4 years ago
- 4 comments
#139 - Flip Hybrid Edge Move
Pull Request -
State: closed - Opened by coraallensavietta about 4 years ago
- 8 comments
#138 - writeTopologyLevel1 changes the network when printID=true
Issue -
State: open - Opened by crsl4 about 4 years ago
- 2 comments
Labels: to do
#137 - CompatHelper: bump compat for "DataStructures" to "0.18"
Pull Request -
State: closed - Opened by github-actions[bot] about 4 years ago
- 7 comments
#136 - major re-write on snaq check root
Issue -
State: open - Opened by crsl4 about 4 years ago
- 2 comments
Labels: to do
#135 - Minor fixes: added 2 spaces and QuartetNetwork docstring
Pull Request -
State: closed - Opened by crsl4 about 4 years ago
- 16 comments
#134 - Additional Data Info in PhyLiNC prints
Pull Request -
State: closed - Opened by coraallensavietta about 4 years ago
- 2 comments
#133 - prep for v0.12.0
Pull Request -
State: closed - Opened by cecileane about 4 years ago
- 1 comment
#132 - update to BioSymbols 4.0, BioSequences 2.0, add FASTX
Pull Request -
State: closed - Opened by cecileane about 4 years ago
- 2 comments
#131 - update to DataFrames v0.21, CSV v0.7
Pull Request -
State: closed - Opened by cecileane about 4 years ago
- 3 comments
#130 - How to use snp to do phylogenetic networks analysis using PhyloNetworks.jl?
Issue -
State: closed - Opened by xiekunwhy over 4 years ago
- 1 comment
#129 - write/plot bug when root at leaf
Issue -
State: closed - Opened by crsl4 over 4 years ago
- 6 comments
Labels: bug
#128 - models for rate variation across sites: +I and +G+I
Pull Request -
State: closed - Opened by cecileane over 4 years ago
- 6 comments
#127 - hardwiredClusterDistance fix
Pull Request -
State: closed - Opened by coraallensavietta over 4 years ago
- 4 comments
#126 - multiple alleles: within-species alleles not monophyletic
Issue -
State: open - Opened by crsl4 over 4 years ago
- 3 comments
Labels: to do
#125 - minor typo in documentation
Issue -
State: closed - Opened by crsl4 over 4 years ago
- 2 comments
#124 - implementing multivariate BM process
Pull Request -
State: closed - Opened by gabehassler over 4 years ago
- 11 comments
#123 - bug fixes: root and gamma NaN
Pull Request -
State: closed - Opened by coraallensavietta over 4 years ago
- 11 comments
#122 - Simulating trait data under multivariate Brownian diffusion
Pull Request -
State: closed - Opened by gabehassler over 4 years ago
- 5 comments
#121 - AddHybridEdgeLiNC Bug Fix
Pull Request -
State: closed - Opened by coraallensavietta over 4 years ago
- 5 comments
#120 - wrong warning readTableCF
Issue -
State: closed - Opened by crsl4 over 4 years ago
- 3 comments
#119 - gradient-based optimization of branch lengths
Pull Request -
State: closed - Opened by cecileane over 4 years ago
- 8 comments
#118 - readTrees2CF does not work
Issue -
State: closed - Opened by migerschw over 4 years ago
- 2 comments
#117 - phyLiNC Bug Fixes
Pull Request -
State: closed - Opened by coraallensavietta over 4 years ago
- 3 comments
#116 - bootstrap step is too slow
Issue -
State: open - Opened by tangerzhang over 4 years ago
#115 - Install TagBot as a GitHub Action
Pull Request -
State: closed - Opened by JuliaTagBot over 4 years ago
- 2 comments
#114 - Optimize Network Wrappers
Pull Request -
State: closed - Opened by coraallensavietta over 4 years ago
- 9 comments
#113 - error in hybridlambdaformat
Issue -
State: closed - Opened by crsl4 over 4 years ago
- 8 comments