Ecosyste.ms: Issues
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GitHub / crmackay/sblade issues and pull requests
#36 - implemenation optimization: boyer-moore-harspool
Issue -
State: open - Opened by crmackay about 8 years ago
Labels: ready
#35 - flamegraph and optimization
Issue -
State: open - Opened by crmackay about 8 years ago
Labels: ready
#34 - add fastqio
Issue -
State: open - Opened by crmackay about 8 years ago
Labels: in progress
#33 - data for paper:
Issue -
State: open - Opened by crmackay about 8 years ago
Labels: ready
#32 - add pthreads, concurrency
Issue -
State: open - Opened by crmackay about 8 years ago
Labels: in progress
#31 - performance testing
Issue -
State: open - Opened by crmackay over 8 years ago
#30 - pulling in updates from master
Pull Request -
State: closed - Opened by crmackay over 8 years ago
#29 - add SIMD support
Issue -
State: open - Opened by crmackay almost 9 years ago
#28 - add four-russians speed up
Issue -
State: open - Opened by crmackay about 9 years ago
Labels: ready
#27 - fix alignment algorithm
Issue -
State: open - Opened by crmackay about 9 years ago
Labels: in progress
#26 - add to homebrew
Issue -
State: open - Opened by crmackay about 9 years ago
#25 - add automated testing and deployment
Issue -
State: open - Opened by crmackay about 9 years ago
- 1 comment
#24 - fill and clean up unit tests
Issue -
State: open - Opened by crmackay about 9 years ago
Labels: ready
#23 - add deduplication support
Issue -
State: open - Opened by crmackay about 9 years ago
Labels: TODO
#22 - 5' alignment aglorithm
Issue -
State: closed - Opened by crmackay over 9 years ago
#21 - plan for optimizing memory management
Issue -
State: open - Opened by crmackay over 9 years ago
#20 - new semi-global alignment algorithm with incorporation of quality data
Issue -
State: open - Opened by crmackay over 9 years ago
- 1 comment
#19 - Simplified types
Pull Request -
State: closed - Opened by crmackay over 9 years ago
#18 - anaylze and fix barcode probabilitie
Issue -
State: closed - Opened by crmackay over 9 years ago
#17 - optimize search algorithm
Issue -
State: open - Opened by crmackay over 9 years ago
Labels: TODO, in progress
#16 - refactor types
Issue -
State: closed - Opened by crmackay over 9 years ago
Labels: TODO
#15 - add complexity screen
Issue -
State: closed - Opened by crmackay over 9 years ago
Labels: TODO
#14 - stdin/stdout pipe support
Issue -
State: open - Opened by crmackay over 9 years ago
Labels: ready
#13 - gzip support
Issue -
State: closed - Opened by crmackay over 9 years ago
Labels: enhancement
#12 - fix: 2nd and third read trimming
Issue -
State: closed - Opened by crmackay over 9 years ago
Labels: TODO, Backlog
#11 - data collection: total reads processed?
Issue -
State: open - Opened by crmackay over 9 years ago
- 1 comment
Labels: TODO, in progress, Backlog
#10 - unit test: data collection
Issue -
State: open - Opened by crmackay over 9 years ago
Labels: TODO, Backlog
#9 - unit test: read cutting
Issue -
State: closed - Opened by crmackay over 9 years ago
Labels: TODO
#8 - add apriori probability calculation option
Issue -
State: open - Opened by crmackay over 9 years ago
Labels: enhancement
#7 - add 5' trimming and barcode sorting
Issue -
State: closed - Opened by crmackay over 9 years ago
Labels: TODO, Backlog
#6 - draft paper
Issue -
State: open - Opened by crmackay almost 10 years ago
Labels: TODO, in progress
#5 - submit for DOI
Issue -
State: open - Opened by crmackay almost 10 years ago
Labels: TODO
#4 - add config file parsing
Issue -
State: open - Opened by crmackay almost 10 years ago
Labels: TODO, Backlog
#3 - add command line arguments
Issue -
State: open - Opened by crmackay almost 10 years ago
Labels: TODO, in progress
#2 - get a working version
Issue -
State: closed - Opened by crmackay almost 10 years ago
Labels: TODO, Backlog
#1 - Documentation
Issue -
State: open - Opened by crmackay almost 10 years ago
Labels: TODO, Backlog