Ecosyste.ms: Issues

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GitHub / crmackay/sblade issues and pull requests

#36 - implemenation optimization: boyer-moore-harspool

Issue - State: open - Opened by crmackay over 7 years ago
Labels: ready

#35 - flamegraph and optimization

Issue - State: open - Opened by crmackay over 7 years ago
Labels: ready

#34 - add fastqio

Issue - State: open - Opened by crmackay over 7 years ago
Labels: in progress

#33 - data for paper:

Issue - State: open - Opened by crmackay over 7 years ago
Labels: ready

#32 - add pthreads, concurrency

Issue - State: open - Opened by crmackay over 7 years ago
Labels: in progress

#31 - performance testing

Issue - State: open - Opened by crmackay about 8 years ago

#30 - pulling in updates from master

Pull Request - State: closed - Opened by crmackay about 8 years ago

#29 - add SIMD support

Issue - State: open - Opened by crmackay over 8 years ago

#28 - add four-russians speed up

Issue - State: open - Opened by crmackay over 8 years ago
Labels: ready

#27 - fix alignment algorithm

Issue - State: open - Opened by crmackay over 8 years ago
Labels: in progress

#26 - add to homebrew

Issue - State: open - Opened by crmackay over 8 years ago

#25 - add automated testing and deployment

Issue - State: open - Opened by crmackay over 8 years ago - 1 comment

#24 - fill and clean up unit tests

Issue - State: open - Opened by crmackay over 8 years ago
Labels: ready

#23 - add deduplication support

Issue - State: open - Opened by crmackay over 8 years ago
Labels: TODO

#22 - 5' alignment aglorithm

Issue - State: closed - Opened by crmackay almost 9 years ago

#21 - plan for optimizing memory management

Issue - State: open - Opened by crmackay almost 9 years ago

#20 - new semi-global alignment algorithm with incorporation of quality data

Issue - State: open - Opened by crmackay about 9 years ago - 1 comment

#19 - Simplified types

Pull Request - State: closed - Opened by crmackay about 9 years ago

#18 - anaylze and fix barcode probabilitie

Issue - State: closed - Opened by crmackay about 9 years ago

#17 - optimize search algorithm

Issue - State: open - Opened by crmackay about 9 years ago
Labels: TODO, in progress

#16 - refactor types

Issue - State: closed - Opened by crmackay about 9 years ago
Labels: TODO

#15 - add complexity screen

Issue - State: closed - Opened by crmackay about 9 years ago
Labels: TODO

#14 - stdin/stdout pipe support

Issue - State: open - Opened by crmackay about 9 years ago
Labels: ready

#13 - gzip support

Issue - State: closed - Opened by crmackay about 9 years ago
Labels: enhancement

#12 - fix: 2nd and third read trimming

Issue - State: closed - Opened by crmackay about 9 years ago
Labels: TODO, Backlog

#11 - data collection: total reads processed?

Issue - State: open - Opened by crmackay about 9 years ago - 1 comment
Labels: TODO, in progress, Backlog

#10 - unit test: data collection

Issue - State: open - Opened by crmackay about 9 years ago
Labels: TODO, Backlog

#9 - unit test: read cutting

Issue - State: closed - Opened by crmackay about 9 years ago
Labels: TODO

#8 - add apriori probability calculation option

Issue - State: open - Opened by crmackay about 9 years ago
Labels: enhancement

#7 - add 5' trimming and barcode sorting

Issue - State: closed - Opened by crmackay about 9 years ago
Labels: TODO, Backlog

#6 - draft paper

Issue - State: open - Opened by crmackay over 9 years ago
Labels: TODO, in progress

#5 - submit for DOI

Issue - State: open - Opened by crmackay over 9 years ago
Labels: TODO

#4 - add config file parsing

Issue - State: open - Opened by crmackay over 9 years ago
Labels: TODO, Backlog

#3 - add command line arguments

Issue - State: open - Opened by crmackay over 9 years ago
Labels: TODO, in progress

#2 - get a working version

Issue - State: closed - Opened by crmackay over 9 years ago
Labels: TODO, Backlog

#1 - Documentation

Issue - State: open - Opened by crmackay over 9 years ago
Labels: TODO, Backlog