Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / cov-lineages/pango-designation issues and pull requests

#2781 - MC.10+S:A435S,Orf9b:R47H (37 seqs, >10 places)

Issue - State: open - Opened by aviczhl2 7 days ago

#2778 - KP.3.1.1+S:N1187H( 45 seqs, 11 countries)

Issue - State: open - Opened by aviczhl2 13 days ago

#2774 - KP.2.3/XEC Recombinant(44 seqs, 12 countries)

Issue - State: open - Opened by Fearuncle 17 days ago - 26 comments

#2773 - KP.2.8 with S:255-257 deletions (34 seqs, 12 countries)

Issue - State: open - Opened by NkRMnZr 18 days ago - 1 comment

#2771 - KP.3.3+Orf1b:A1603S+Orf10 frameshift, S:F59S(52 seqs, 6 countries)

Issue - State: open - Opened by aviczhl2 21 days ago - 5 comments

#2770 - KP.2 Plus S:I934V and S:N30K emerged in China (40 , 9 countries)

Issue - State: open - Opened by FedeGueli 22 days ago - 4 comments

#2769 - LB.1 + S:K478T (rev) + S:E96V emerged in Nepal (11)

Issue - State: closed - Opened by FedeGueli 22 days ago - 2 comments

#2768 - Second branch of XEC with Orf1a:I1367L (98, 17 countries)

Issue - State: open - Opened by FedeGueli 22 days ago - 7 comments

#2766 - LB.1.7+S:R190S with C22096T branch (14 seqs, 3 countries)

Issue - State: closed - Opened by DailyCovidCases 23 days ago - 4 comments

#2765 - KP.2.3+S:A1174V (118 seqs, 16 countries) 13% in Brazil

Issue - State: open - Opened by aviczhl2 23 days ago - 2 comments

#2764 - KP.3.2+S:S31P widespread in China(19 seqs, 6 countries)

Issue - State: open - Opened by aviczhl2 24 days ago - 5 comments

#2763 - Usher placement shift of MC.1

Issue - State: closed - Opened by aviczhl2 24 days ago - 1 comment

#2762 - Proposal to include MU.1 without C26735T.

Issue - State: open - Opened by aviczhl2 25 days ago - 3 comments

#2757 - JN.1.4.5+S:F456L with C28948T branch (29 seqs)

Issue - State: closed - Opened by DailyCovidCases about 1 month ago - 4 comments

#2751 - KS.1.1/JN.1* recombinant (170 seqs, 19 countries, 9% South Korea)

Issue - State: open - Opened by aviczhl2 about 1 month ago - 17 comments

#2750 - KP.1.1.5+Orf1a:A2785V,A4357V+S:S680Y(69 seqs, 10 countries)

Issue - State: open - Opened by aviczhl2 about 1 month ago - 4 comments

#2748 - KP.2.2 + S:T22N (133, 17 countries likely emerged in Nepal)

Issue - State: open - Opened by FedeGueli about 1 month ago - 11 comments

#2747 - KP.1.1+S:S71Y,S31del or JN.1.11.1/LP.2 recombinant(52 seqs, 13 countries)

Issue - State: open - Opened by aviczhl2 about 1 month ago - 10 comments

#2746 - LB.1+S:R190S (39 seqs, 12 countries)

Issue - State: open - Opened by aviczhl2 about 1 month ago - 2 comments

#2738 - JN.1.4+S:S31del,Orf8:E106Q+S:R346T(76 seqs, 6 countries)

Issue - State: open - Opened by aviczhl2 about 1 month ago - 6 comments

#2736 - KP.2+Orf1a:P1803L, S:K558N, S:F32del(53 seqs, 13 countries)

Issue - State: open - Opened by aviczhl2 about 1 month ago - 2 comments

#2731 - KP.2/KP.3.2.3 recombinant. most have additional S:S31F (42 seqs, 11 countries)

Issue - State: open - Opened by aviczhl2 about 2 months ago - 3 comments

#2730 - KP.2.6+S:L441F(82 seqs, 10 countries)

Issue - State: open - Opened by aviczhl2 about 2 months ago - 2 comments

#2729 - KP.3.1.1+S:R346T (120 seqs, 17 countries, 4 with Orf9b:I5T)

Issue - State: open - Opened by aviczhl2 about 2 months ago - 13 comments

#2728 - KP.3.3+Orf9b:V37G(114 seqs, 9 countries)

Issue - State: open - Opened by aviczhl2 about 2 months ago - 2 comments

#2727 - Suggestion to alter KP.3.1.3 designation to only the G25644T branch

Issue - State: open - Opened by aviczhl2 about 2 months ago - 5 comments

#2722 - KP.2.3(no 31del)+S:T572I(242 seqs, 17 countries )

Issue - State: open - Opened by aviczhl2 about 2 months ago - 7 comments

#2718 - KP.2.2+S:T572I (52 seqs) and its sublineage with S:K182R,S:A846V (36 seqs)

Issue - State: open - Opened by DailyCovidCases about 2 months ago - 16 comments

#2715 - KP.2+S:F32del (95 seqs, 10 countries, 27% Ecuador, 9 with S:I101T)

Issue - State: open - Opened by aviczhl2 about 2 months ago - 10 comments

#2713 - LB.1.7+S:R190S(61 seqs, 5 countries)

Issue - State: open - Opened by aviczhl2 about 2 months ago - 7 comments

#2698 - KP.2+S:H146Y misread on GISAID (170 seqs, 14 countries)

Issue - State: open - Opened by aviczhl2 2 months ago - 7 comments

#2687 - KP.2.2+Orf9b:N62S(579 seqs, 26 countries, 9 with S:T572I)

Issue - State: open - Opened by aviczhl2 3 months ago - 13 comments

#2650 - JN.1+S:Q677L+S:F456L with C14676T branch (67 seqs)

Issue - State: closed - Opened by DailyCovidCases 4 months ago - 11 comments

#2649 - KP.1.1+Orf1b:L2213F+S:N185del, F186I(323 seqs, 33 countries)

Issue - State: open - Opened by aviczhl2 4 months ago - 14 comments

#2631 - Lineage note distinctive mutation for JN.1.56 is incorrect.

Issue - State: closed - Opened by alurqu 4 months ago - 3 comments

#2613 - JN.1+S:F456L with Orf10:P10S (107 seqs)

Issue - State: closed - Opened by DailyCovidCases 4 months ago - 17 comments

#2607 - JN.1.4.5 + S:F456L with C28201T branch (96 seqs)

Issue - State: closed - Opened by DailyCovidCases 4 months ago - 6 comments

#2602 - JN.1.4 with Orf1a:D4117N, S:T22N and S:R346T (54 seqs)

Issue - State: closed - Opened by DailyCovidCases 4 months ago - 4 comments

#2601 - JN.1.4.5 + S:R346T that further gained S:T732I (77 seqs)

Issue - State: closed - Opened by DailyCovidCases 4 months ago - 4 comments

#2600 - JN.1+S:R346T on C2395T branch (35 seqs, 4 countries)

Issue - State: closed - Opened by DailyCovidCases 4 months ago - 2 comments

#2525 - JN.1.8.1+S:H146Q(285 seqs, 8 countries)

Issue - State: closed - Opened by aviczhl2 7 months ago - 9 comments

#2431 - HK.3.2 sublineage with S:E471Q(40 sequences, 13 countries)

Issue - State: open - Opened by Over-There-Is 9 months ago - 3 comments

#1219 - CB.1 (BA.2.75.9.1) diversity issue

Issue - State: open - Opened by corneliusroemer almost 2 years ago - 3 comments

#100 - Would you add sequences' accession ID information to the lineages.metadata.csv?

Issue - State: closed - Opened by gotao2 over 3 years ago - 2 comments
Labels: comment

#99 - Most B.6.7 representatives have A24389C and G24390C, associated with untrimmed nanopore adapter seq

Issue - State: closed - Opened by AngieHinrichs over 3 years ago - 2 comments
Labels: correction

#98 - more representative sequences for B.1.617.1, B.1.617.2, B.1.617.3

Pull Request - State: closed - Opened by AngieHinrichs over 3 years ago

#97 - Remove a duplicated line & three conflicts from lineages.csv

Pull Request - State: closed - Opened by AngieHinrichs over 3 years ago

#96 - Emilia Romagna Lineage

Issue - State: closed - Opened by gdirani over 3 years ago - 1 comment
Labels: not accepted

#95 - B.1.617.2 sublineage with K417N

Issue - State: closed - Opened by rambaut over 3 years ago - 6 comments
Labels: designated

#94 - Potential new B.1.400 lineage with E484K in USA/UT

Issue - State: closed - Opened by erinyoung over 3 years ago - 5 comments
Labels: designated

#93 - Proposal of B.1 sublineage with Spike substitutions N440K and E484K and 69/70 deletions, among others

Issue - State: closed - Opened by ha-ruiz75 over 3 years ago - 5 comments
Labels: designated

#91 - New lineage proposal of SARS-CoV-2 strains having D614G, P681H and V1230L mutations in S glycoprotein

Issue - State: closed - Opened by 08011990 over 3 years ago - 6 comments
Labels: designated

#90 - New sub-lineage of C.36 with S:L452R

Issue - State: closed - Opened by jcbarret over 3 years ago - 2 comments
Labels: proposed

#89 - new B.1.525 sequences

Pull Request - State: closed - Opened by AngieHinrichs over 3 years ago - 1 comment

#88 - New B.1.617.2 sequences

Pull Request - State: closed - Opened by AngieHinrichs over 3 years ago

#87 - alias_key.json with withdrawn lineages

Issue - State: closed - Opened by danielmoney over 3 years ago - 2 comments

#86 - New "P.n" lineage in Brazil with mutations E484Q and N501T

Issue - State: closed - Opened by aplamarca over 3 years ago - 1 comment
Labels: designated

#85 - Proposal of two new lineages from B.1.1 that seem to rapidly increase in frequency in Russia

Issue - State: closed - Opened by GalkaKlink over 3 years ago - 4 comments
Labels: designated

#84 - My data was not classified correctly

Issue - State: closed - Opened by afmarti over 3 years ago - 1 comment

#83 - (apparent) B.1.617.2 sequences assigned as B.1.153

Issue - State: closed - Opened by jcbarret over 3 years ago - 2 comments
Labels: correction

#81 - B.1.553 representatives: ambiguous bases / AD.2; withdraw?

Issue - State: closed - Opened by AngieHinrichs over 3 years ago - 1 comment
Labels: correction

#80 - new lineage: B.1.1.1 with key mutations 69/70del, L452R and S477N

Issue - State: closed - Opened by merijnvanhee over 3 years ago - 9 comments
Labels: designated

#79 - A New Potential lineage (T.1) specifically located in Campania, Italy, is spreading exponentially.

Issue - State: closed - Opened by agrimaldi93 over 3 years ago - 2 comments
Labels: designated

#78 - Request for lineage A.29 with several spike mutations shared with variants of concern (Y449H, N501Y, H655Y)

Issue - State: closed - Opened by SVN-PhD over 3 years ago - 2 comments
Labels: designated

#77 - New SARS-CoV-2 P.1-related lineages proposal - P.1-like-I and P.1-like-II in Brazil

Issue - State: closed - Opened by paolacristinaresende over 3 years ago - 6 comments
Labels: designated

#76 - Found 8 pairs of duplicated lines; removed one instance of each.

Pull Request - State: closed - Opened by AngieHinrichs over 3 years ago

#75 - Name updates: USA/CT-JAX[0-9]+ --> USA/CT-JAX-JAX[0-9]+.

Pull Request - State: closed - Opened by AngieHinrichs over 3 years ago

#74 - Updating 400 names changed in GISAID Feb-May 2021.

Pull Request - State: closed - Opened by AngieHinrichs over 3 years ago - 1 comment

#73 - Request for B.1.1.482 Sub-lineage

Issue - State: closed - Opened by mattdmem over 3 years ago - 6 comments
Labels: designated

#71 - Typo fixes: 11 names had '/' instead of '_'.

Pull Request - State: closed - Opened by AngieHinrichs over 3 years ago - 1 comment

#70 - Wrongly assignment of samples to lineage B.1.177, while they should be classified (at least) as B.1.525.

Issue - State: closed - Opened by gabbo89 over 3 years ago - 1 comment
Labels: correction