cov-lineages/pango-designation issues and pull requests

#2883 - Update lineage_notes.txt

Pull Request - State: open - Opened by Over-There-Is 7 days ago - 1 comment

#2882 - Fix LP.8.1.1 Alias

Pull Request - State: open - Opened by DailyCovidCases 7 days ago - 1 comment

#2881 - Fix LP.8.1.1 Alias.txt

Pull Request - State: closed - Opened by DailyCovidCases 7 days ago

#2880 - XEC.18 Orf9b:R32L added to defining

Pull Request - State: open - Opened by FedeGueli 8 days ago

#2879 - XEC+Orf1a:A599T+S:T95I(35 seqs, 8 pl;aces)

Issue - State: closed - Opened by xz-keg 12 days ago - 1 comment

#2878 - XFA: Recombinant MC.1.1.1/XEC.4.1 Australia 11 samples

Issue - State: closed - Opened by JosetteSchoenma 14 days ago - 5 comments

#2877 - XFB: Apparently fast spreading MC.24/XDY.1+S:T572I/MC.24 recombinant (13 seqs, 7 places) with a S:S494P branch (3, US-2 States)

Issue - State: closed - Opened by FedeGueli 14 days ago - 2 comments

#2876 - LP.8.1 + S:Q677H (23 seqs, 7 countries - January 27th)

Issue - State: closed - Opened by cvejris 15 days ago - 2 comments

#2875 - MC.13.3+S:R346T(32 seqs, >10 places)

Issue - State: open - Opened by xz-keg 16 days ago

#2874 - LP.8.1.1 + S:R765L (23 seqs, 10 countries - January 28th)

Issue - State: closed - Opened by cvejris 17 days ago - 6 comments

#2873 - LF.7.1 + S:T572I (21, 10 Places)

Issue - State: open - Opened by FedeGueli 17 days ago - 2 comments

#2872 - LP.8.1.1 + S:A475V (15 seqs, 4 countries)

Issue - State: closed - Opened by cvejris 20 days ago - 2 comments

#2871 - XEC.11+Orf10:N5D+Orf1a:V2090F,Orf3a:L85F+S:V1264L( 83 seqs, >10 places)

Issue - State: open - Opened by xz-keg 21 days ago

#2870 - MC.13+Orf1a:G445V+S:T572I(117 seqs, >10 places)

Issue - State: open - Opened by xz-keg 21 days ago

#2869 - LP.8.1+Orf1b:V980I, Orf10:Q29*(54 seqs, >10 places, 10 with S:A475V)

Issue - State: closed - Opened by xz-keg 21 days ago - 4 comments

#2868 - LP.8.1 (KP.1.1.3.8.1) sublineage with S:T22N (35 seqs in 7 countries)

Issue - State: closed - Opened by HynnSpylor 22 days ago - 10 comments

#2867 - MV.1+Orf1b:S1003G+S:V1264L(16 seqs, 7 places, 5 with S:T572I)

Issue - State: open - Opened by xz-keg 22 days ago - 3 comments

#2866 - XDY+S:R346T( 53 seqs,>10 places, 6 with S:Q677H+S:H445R LP.8-mimic)

Issue - State: open - Opened by xz-keg 22 days ago - 2 comments

#2866 - XDY.2(XDY+S:R346T,Q677H)+S:H445R (7 seqs,Singapore)

Issue - State: open - Opened by xz-keg 22 days ago - 9 comments

#2865 - KP.3+S:T22N,S31F(28 seqs, >10 places)

Issue - State: open - Opened by xz-keg 22 days ago - 2 comments

#2865 - KP.3+S:T22N,S31F(28 seqs, >10 places)

Issue - State: open - Opened by xz-keg 22 days ago - 1 comment

#2864 - add_57_autorefs

Pull Request - State: closed - Opened by xz-keg 23 days ago - 1 comment

#2863 - LF.7.2.1 (JN.1.16.1.7.2.1) sublineage with S:N137K (14 seqs in 9 countries)

Issue - State: open - Opened by HynnSpylor 24 days ago - 2 comments

#2862 - MC.10.2 got S:K679R in New Zealand (30% in 2025), AUS-NSW-QLD, Canada (126) with a branch with S:S673T (7, Aus, NZL)

Issue - State: closed - Opened by FedeGueli 24 days ago - 4 comments

#2862 - MC.10.2 got S:K679R in New Zealand (10% prevalence), AUS-NSW-QLD, Canada (60) with a branch with S:S673T (3, Aus, NZL)

Issue - State: open - Opened by FedeGueli 24 days ago

#2861 - LP.8.1.1 + S:P85S (53, 7 Places)

Issue - State: closed - Opened by FedeGueli 26 days ago - 4 comments

#2860 - KP.3.1.1 + NSP14_P121S + N:A119T branch with S:T572I and S:A435S (38, 5 Places)

Issue - State: open - Opened by FedeGueli 26 days ago

#2860 - KP.3.1.1 + NSP14_P121S + N:A119T branch with S:T572I and S:A435S (64, 7 Places)

Issue - State: open - Opened by FedeGueli 26 days ago - 4 comments

#2859 - KP.3.3 got S:T22N and S:P1162S emerged likely in Argentina (21, 9 places ) with a S:S31F branch (14, US-5 States ,Dominican Rep., Chile, Uruguay,Canada, Puertorico)

Issue - State: open - Opened by FedeGueli 29 days ago - 3 comments

#2858 - LF.7 + Orf1a:R1225I + S:H445P (8, 3 places, mainly US)

Issue - State: closed - Opened by FedeGueli 29 days ago - 1 comment

#2857 - XEC+Orf1a:A599T+S:A222V(54 seqs, >10 places, 4 with S:A688V)

Issue - State: open - Opened by xz-keg about 1 month ago - 1 comment

#2856 - KP.3.1.1 gained in a stepwise manner S:V227I, S:T572I and S:N532T in NY-Wayne County

Issue - State: closed - Opened by FedeGueli about 1 month ago - 1 comment

#2855 - LF.7 + Orf1a:R1225I (NSP4_R407I) + S:T572I (57, >10 places) 80% prevalence in Peru' after Dec 25, with a S:S1261P sub-branch (7, 3 Places)

Issue - State: open - Opened by FedeGueli about 1 month ago - 11 comments

#2854 - XEL+S:V159I( 76 seqs, >10 places, mainly in Russia)

Issue - State: open - Opened by xz-keg about 1 month ago - 1 comment

#2853 - LP.8.1 + S:A475V (30 seqs, 6 countries - January 13th)

Issue - State: closed - Opened by cvejris about 1 month ago - 9 comments

#2852 - KP.4.2+Orf1b:T132I+S:S31-,R190S widespread in Central/South Asia(39 seqs, >10 places, 4 with S:A435S+A475V)

Issue - State: open - Opened by xz-keg about 1 month ago - 2 comments

#2851 - KP.3.1.1+Orf1b:R1736K+S:R346T two branches in South America (19 with S:S929T, 44 with S:H445R LP.8-mimic)

Issue - State: open - Opened by xz-keg about 2 months ago - 13 comments

#2850 - Correction: Added S:S31del to defining of KP.3.3.5

Pull Request - State: open - Opened by FedeGueli about 2 months ago - 1 comment

#2849 - Kp.3.2.9 sublineage got S:S31del after C7267T (74, >10 Places recently in Ontario)

Issue - State: closed - Opened by FedeGueli about 2 months ago - 4 comments

#2849 - Kp.3.2.9 sublineage got S:S31del after C7267T (74, >10 Places recently in Ontario)

Issue - State: closed - Opened by FedeGueli about 2 months ago - 4 comments

#2848 - KP.3.1.11: added route and corrected a nucleotide mutation

Pull Request - State: closed - Opened by FedeGueli about 2 months ago - 1 comment

#2847 - MC.1 subbranch with S:F4L and Orf1a:E977D(82, 5 countries)

Issue - State: closed - Opened by Over-There-Is about 2 months ago - 2 comments

#2846 - MC.16+S:F65S(78 seqs, >10 places, 15% in Chile)

Issue - State: open - Opened by xz-keg about 2 months ago

#2846 - MC.16+S:F65S(101 seqs, >10 places, mostly in Chile)

Issue - State: open - Opened by xz-keg about 2 months ago - 7 comments

#2845 - XEC+Orf1a:A599T+Orf1b:T1555I(193 seqs, >10 places)

Issue - State: open - Opened by xz-keg about 2 months ago - 1 comment

#2845 - XEC+Orf1a:A599T+Orf1b:T1555I(193 seqs, >10 places)

Issue - State: open - Opened by xz-keg about 2 months ago - 1 comment

#2844 - KP.3.3 got S:S31del and then S:A435S ( 26 , 5 places and 3 continents) 7% in Chile recently

Issue - State: open - Opened by FedeGueli about 2 months ago - 2 comments

#2844 - KP.3.3 got S:S31del and then S:A435S ( 26 , 5 places and 3 continents) 7% in Chile recently

Issue - State: closed - Opened by FedeGueli about 2 months ago - 5 comments

#2843 - JN.1.4.5 subbranch with S:S31F, R346T, F456L on C28948T branch being misplaced (46 seqs, 12 regions) and further S:T22N(34, 11) then S:K478Trev(13, 6) then S:R190S, S255F, A522P(TH 3), mainly in Yunnan and Thailand

Issue - State: open - Opened by Over-There-Is about 2 months ago - 8 comments

#2842 - XEW: KP.3.1.1/XEC.8 recombinant(50 sequences, 7 countries)

Issue - State: closed - Opened by Over-There-Is about 2 months ago - 8 comments

#2841 - LB.1.3.4: correcting the defining AA

Pull Request - State: closed - Opened by FedeGueli about 2 months ago - 1 comment

#2841 - LB.1.3.4: correcting the defining AA

Pull Request - State: closed - Opened by FedeGueli about 2 months ago - 1 comment

#2840 - XEC+Orf1a:A599T+S:K182N(31 seqs, >10 places)

Issue - State: closed - Opened by xz-keg about 2 months ago - 1 comment

#2840 - XEC+Orf1a:A599T+S:K182N(31 seqs, >10 places)

Issue - State: closed - Opened by xz-keg about 2 months ago - 1 comment

#2839 - XEC+Orf1a:A599T+S:G75R(35 seqs, 10 places)

Issue - State: closed - Opened by xz-keg about 2 months ago - 1 comment

#2839 - XEC+Orf1a:A599T+S:G75R(35 seqs, 10 places)

Issue - State: closed - Opened by xz-keg about 2 months ago - 1 comment

#2838 - XEC.2.3: XEC.2 + N:T379I (51 on Gisaid in 6 countries) 19 with S:G181V

Issue - State: closed - Opened by Fearuncle about 2 months ago - 1 comment

#2838 - XEC.2.3: XEC.2 + N:T379I (51 on Gisaid in 6 countries) 19 with S:G181V

Issue - State: closed - Opened by Fearuncle about 2 months ago - 1 comment

#2837 - XEC.12: XEC + S:G252S (39 in 17 places 6 countries )

Issue - State: closed - Opened by Fearuncle about 2 months ago - 4 comments

#2837 - XEC.12: XEC + S:G252S (39 in 17 places 6 countries )

Issue - State: closed - Opened by Fearuncle about 2 months ago - 2 comments

#2836 - LF.7.3 + Orf1a:P2046L + S:A475V (23 samples, > 10 Places)

Issue - State: closed - Opened by FedeGueli 2 months ago - 2 comments

#2836 - LF.7.3 + Orf1a:P2046L + S:A475V (23 samples, > 10 Places)

Issue - State: closed - Opened by FedeGueli 2 months ago - 2 comments

#2835 - Issue to Register Singlet Recombinants that shall be not be removed by usher (starting from 2024-12-5 ) Part IV.

Issue - State: closed - Opened by xz-keg 2 months ago

#2834 - LP.8.1 gained S:K679R (45, 8 Places , 11 airport samples from four different countries Philippines, Australia, Japan,Malaysia) with a S:A475V sublineage (5)

Issue - State: closed - Opened by FedeGueli 2 months ago - 14 comments

#2833 - KP.3.1.4 subbranch with S:A263V(58 seqs, 11 regions), most with further S:R765H(54 seqs, 10 regions)

Issue - State: closed - Opened by Over-There-Is 2 months ago - 2 comments

#2832 - KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(73, 8 countries)

Issue - State: open - Opened by Over-There-Is 2 months ago - 4 comments

#2831 - KP.3.1.1 + S:D88E (66 Seqs , 8 places including US-16 States)

Issue - State: closed - Opened by FedeGueli 2 months ago - 2 comments

#2830 - XEC+Orf1a:A599T+S:S98F( 62 seqs, >10 places)

Issue - State: closed - Opened by xz-keg 3 months ago - 3 comments

#2830 - XEC+Orf1a:A599T+S:S98F( 62 seqs, >10 places)

Issue - State: closed - Opened by xz-keg 3 months ago - 3 comments

#2829 - Update lineage_notes.txt

Pull Request - State: closed - Opened by Memorablea 3 months ago - 4 comments

#2829 - Update lineage_notes.txt

Pull Request - State: closed - Opened by Memorablea 3 months ago - 4 comments

#2828 - XEL+S:V159I( 27 seqs, 5 places of Russia)

Issue - State: closed - Opened by xz-keg 3 months ago - 1 comment

#2828 - XEL+S:V159I( 27 seqs, 5 places of Russia)

Issue - State: closed - Opened by xz-keg 3 months ago - 1 comment

#2827 - KP.3.1.9+S:T22N,N30-,S31-,F32I(41 seqs, 8 places)

Issue - State: closed - Opened by xz-keg 3 months ago - 4 comments

#2826 - MV.1 + ORF1b:K2557R (116 in 10 countries)

Issue - State: closed - Opened by Fearuncle 3 months ago - 6 comments

#2826 - MV.1 + ORF1b:K2557R (116 in 10 countries)

Issue - State: closed - Opened by Fearuncle 3 months ago - 6 comments

#2825 - LB.1.3.4 [S:T>A376S circulating in South Africa ] sublineage with S:H445R (15)

Issue - State: closed - Opened by FedeGueli 3 months ago - 12 comments

#2824 - add 66 autorefs

Pull Request - State: closed - Opened by xz-keg 3 months ago - 1 comment

#2823 - KP.3.1.1+Orf9b:T79I+S:D1260Y(196 seqs, >10 places)

Issue - State: closed - Opened by xz-keg 3 months ago - 9 comments

#2822 - KP.3.1.1 + S:W64C, ORF9b:P39L, ORF1a:N4351T, ORF1b:S1658Y (54 seq, 5 continents)

Issue - State: closed - Opened by ryhisner 3 months ago - 2 comments

#2822 - KP.3.1.1 + S:W64C, ORF9b:P39L, ORF1a:N4351T, ORF1b:S1658Y (54 seq, 5 continents)

Issue - State: closed - Opened by ryhisner 3 months ago - 2 comments

#2821 - KP.3.3.2 (S:A435S) sublineage with S:S31del (90 seqs, Canada- 5 regions, Minnesota) and then S:S446N (19 seqs, 3 regions in Canada)

Issue - State: closed - Opened by Sinickle 3 months ago - 4 comments

#2821 - KP.3.3.2 (S:A435S) sublineage with S:S31del (90 seqs, Canada- 5 regions, Minnesota) and then S:S446N (19 seqs, 3 regions in Canada)

Issue - State: closed - Opened by Sinickle 3 months ago - 4 comments

#2820 - KP.3.1.1+S:S721G(98 seqs, >10 places)

Issue - State: open - Opened by xz-keg 3 months ago - 6 comments

#2819 - XEC+S:G72R (22 seqs, 11 countries)

Issue - State: closed - Opened by cvejris 3 months ago - 2 comments

#2819 - XEC+S:G72R (22 seqs, 11 countries)

Issue - State: closed - Opened by cvejris 3 months ago - 2 comments

#2817 - KS.1.1.2/KP.3 recombinant(71 seqs, >10 places)

Issue - State: closed - Opened by xz-keg 3 months ago - 30 comments

#2817 - KS.1.1.2/KP.3 recombinant(71 seqs, >10 places)

Issue - State: closed - Opened by xz-keg 3 months ago - 30 comments

#2816 - Minisaltation KP.3.2.3 + S:T22N + S:S31F (3, Taiwan, Singapore)

Issue - State: closed - Opened by FedeGueli 4 months ago - 3 comments

#2816 - Minisaltation KP.3.2.3 + S:T22N + S:S31F (3, Taiwan, Singapore)

Issue - State: closed - Opened by FedeGueli 4 months ago - 3 comments

#2815 - KP.3.1.1+S:R190S(67 seqs, >10 places)

Issue - State: open - Opened by xz-keg 4 months ago - 8 comments

#2815 - KP.3.1.1+S:R190S(67 seqs, >10 places)

Issue - State: open - Opened by xz-keg 4 months ago - 9 comments

#2814 - KP.1.1.6 added S:N185del, S:F186I as defining

Pull Request - State: closed - Opened by FedeGueli 4 months ago - 1 comment

#2814 - KP.1.1.6 added S:N185del, S:F186I as defining

Pull Request - State: closed - Opened by FedeGueli 4 months ago - 1 comment

#2813 - XEC.18 & XEV: XEC subbranch with Orf9b:R32L on Orf1a:A599T branch(471 seqs, 32 regions) and its recombinant with KP.3.1.1(135 sequences, 14 regions)

Issue - State: closed - Opened by Over-There-Is 4 months ago - 35 comments

#2812 - XEC + S:E1202Q (22 seqs, 6 countries)

Issue - State: closed - Opened by cvejris 4 months ago - 2 comments

#2812 - XEC + S:E1202Q (22 seqs, 6 countries)

Issue - State: closed - Opened by cvejris 4 months ago - 2 comments

#2811 - KP.1.1.3 + Orf3a:P178L branch with S:F186L,S:V445R and S:Q493E (66 seqs - >10 countries including Philippines) most with further S:R190S (57)

Issue - State: closed - Opened by FedeGueli 4 months ago - 8 comments

#2810 - Update lineage_notes.txt

Pull Request - State: closed - Opened by Over-There-Is 4 months ago - 2 comments

#2810 - Update lineage_notes.txt

Pull Request - State: closed - Opened by Over-There-Is 4 months ago - 2 comments

GitHub / cov-lineages/pango-designation issues and pull requests