courtois-neuromod/dypac issues and pull requests

#91 - compatibility with both nilearn 0.8 and 0.9

Pull Request - State: closed - Opened by pbellec over 2 years ago

#90 - make dypac retro-compatible with nilearn 0.8

Issue - State: closed - Opened by pbellec over 2 years ago

#89 - Upstream issue: memory cache in nilearn==0.9.1

Issue - State: open - Opened by htwangtw over 2 years ago

#88 - Iss87 (filter very small clusters)

Pull Request - State: closed - Opened by pbellec over 2 years ago

#87 - filter very small clusters

Issue - State: closed - Opened by pbellec over 2 years ago

#86 - Iss83 masker

Pull Request - State: closed - Opened by pbellec almost 3 years ago - 1 comment

#85 - Update nilearn version to 0.9.0

Pull Request - State: closed - Opened by htwangtw almost 3 years ago - 2 comments

#84 - interface for images

Issue - State: open - Opened by pbellec over 3 years ago

#83 - masker

Issue - State: closed - Opened by pbellec over 3 years ago

#82 - add the option to reduce maps inside a state using PCA

Issue - State: open - Opened by pbellec over 3 years ago

#81 - "clean" models have broken `inverse_transform`

Issue - State: open - Opened by pbellec over 3 years ago - 1 comment

#80 - Should fix the issue with applying NiftiMultiMasker

Pull Request - State: closed - Opened by pbellec about 4 years ago

#79 - bug calling MultiNiftiMasker.

Issue - State: closed - Opened by pbellec about 4 years ago - 1 comment

#78 - Add files via upload

Pull Request - State: closed - Opened by dllussier about 4 years ago

#77 - use compartemental smoothing

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment

#76 - document subsample_size

Issue - State: open - Opened by pbellec over 4 years ago

#75 - Iss74

Pull Request - State: closed - Opened by pbellec over 4 years ago - 1 comment

#74 - constraint brain mask to grey matter

Issue - State: closed - Opened by pbellec over 4 years ago

#73 - Now pypi release.

Pull Request - State: closed - Opened by pbellec over 4 years ago

#72 - Iss71

Pull Request - State: closed - Opened by pbellec over 4 years ago

#71 - add weightning in inter-batch consensus

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment

#70 - Fixing a bunch of codacy issues.

Pull Request - State: closed - Opened by pbellec over 4 years ago - 1 comment

#69 - adrress codacy issues

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment

#68 - start of CLI

Pull Request - State: closed - Opened by dllussier over 4 years ago - 2 comments

#67 - Reorganized the toolbox.

Pull Request - State: closed - Opened by pbellec over 4 years ago - 1 comment

#66 - Iss64

Pull Request - State: closed - Opened by pbellec over 4 years ago

#65 - Iss63

Pull Request - State: closed - Opened by pbellec over 4 years ago

#64 - add an option to weight voxels in the kmeans (meant to be fed by a probabilistic grey matter mask)

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment

#63 - bug in the order of dwell_times

Issue - State: closed - Opened by pbellec over 4 years ago

#62 - uneven batches causes crash when loading data

Issue - State: closed - Opened by dllussier over 4 years ago - 1 comment

#61 - add ordinary least square embedding

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment
Labels: enhancement

#60 - replicate memory leak with sklearn 0.23.dev

Issue - State: closed - Opened by pbellec over 4 years ago - 2 comments

#59 - if thre_sim is too hig, states are empty, and dypac crashes

Issue - State: open - Opened by pbellec over 4 years ago

#58 - added del and garbage collector

Pull Request - State: closed - Opened by HanadS over 4 years ago - 1 comment

#57 - bug in subsampling

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment
Labels: bug

#56 - add embedding file

Pull Request - State: closed - Opened by FrancoisPgm over 4 years ago - 1 comment

#55 - transform method is slow.

Issue - State: closed - Opened by pbellec over 4 years ago - 2 comments

#54 - error when nifti func file does not have enough timepoints

Issue - State: open - Opened by HanadS over 4 years ago

#53 - create a bash interface for dypac

Issue - State: open - Opened by pbellec over 4 years ago
Labels: enhancement

#52 - Fixed a bunch of codacy issues.

Pull Request - State: closed - Opened by pbellec over 4 years ago - 1 comment

#51 - fix codacy issues.

Issue - State: closed - Opened by pbellec over 4 years ago

#50 - Added a first test!

Pull Request - State: closed - Opened by pbellec over 4 years ago

#49 - Circleci project setup

Pull Request - State: closed - Opened by pbellec over 4 years ago - 1 comment

#48 - Fixes issue #46

Pull Request - State: closed - Opened by pbellec over 4 years ago

#47 - Iss44

Pull Request - State: closed - Opened by pbellec over 4 years ago - 2 comments

#46 - n_init_aggregation is not used

Issue - State: closed - Opened by pbellec over 4 years ago

#45 - Add a Codacy badge to README.md

Pull Request - State: closed - Opened by codacy-badger over 4 years ago

#44 - implement batching at the run level

Issue - State: closed - Opened by pbellec over 4 years ago - 2 comments

#43 - Iss42

Pull Request - State: closed - Opened by pbellec over 4 years ago

#42 - refactoring: separate core methods from fMRI class

Issue - State: closed - Opened by pbellec over 4 years ago

#41 - remove the "trash" state

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment

#40 - auto parameter settings and warnings

Issue - State: open - Opened by pbellec over 4 years ago

#39 - test `_propagate_part`

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment

#38 - New interpretation of n_states: it is now the overall number of state…

Pull Request - State: closed - Opened by pbellec over 4 years ago

#37 - Iss34b

Pull Request - State: closed - Opened by pbellec almost 5 years ago

#36 - implement non-random initializaiton of centroids in order to do unit testing

Issue - State: closed - Opened by HanadS almost 5 years ago - 1 comment

#35 - run batches of consensus in parallel

Issue - State: closed - Opened by pbellec almost 5 years ago - 3 comments

#34 - apply consensus clustering for each dataset, and then run a consensus of consensus over datasets.

Issue - State: closed - Opened by pbellec almost 5 years ago - 1 comment

#33 - A variant of k-means for sparse boolean data, more scalable than skle…

Pull Request - State: closed - Opened by pbellec almost 5 years ago

#32 - support for multiple datasets in `transform_sparse` and `inverse_transform_sparse`

Issue - State: closed - Opened by pbellec almost 5 years ago - 2 comments

#31 - re-implement a kmeans for sparse boolean vectors

Issue - State: closed - Opened by pbellec almost 5 years ago - 2 comments

#30 - Iss25

Pull Request - State: closed - Opened by pbellec almost 5 years ago

#29 - remove dependency on load_confounds

Issue - State: closed - Opened by pbellec almost 5 years ago

#28 - code needs comments

Issue - State: closed - Opened by pbellec almost 5 years ago - 1 comment

#27 - notebooks need comments

Issue - State: open - Opened by HanadS almost 5 years ago

#26 - Iss25

Pull Request - State: closed - Opened by pbellec almost 5 years ago

#25 - transform and inverse_transform with sparse components

Issue - State: closed - Opened by pbellec almost 5 years ago - 2 comments

#24 - review API

Issue - State: closed - Opened by pbellec almost 5 years ago - 1 comment

#23 - Got rid of joblib Parallel across datasets.

Pull Request - State: closed - Opened by pbellec almost 5 years ago

#22 - control random state

Issue - State: closed - Opened by pbellec almost 5 years ago - 2 comments

#21 - Fixes issue #17

Pull Request - State: closed - Opened by pbellec almost 5 years ago

#20 - added dwell time threshold

Pull Request - State: closed - Opened by pbellec almost 5 years ago

#19 - Iss7

Pull Request - State: closed - Opened by pbellec almost 5 years ago - 1 comment

#18 - test `_start_window`

Issue - State: closed - Opened by pbellec almost 5 years ago - 1 comment
Labels: good first issue

#17 - order the components by descending order of dwell time

Issue - State: closed - Opened by pbellec almost 5 years ago

#16 - joblib parallelization over datasets and kmeans crash and burn

Issue - State: closed - Opened by pbellec almost 5 years ago - 1 comment

#15 - use sparse representation for onehot and stab_maps

Issue - State: closed - Opened by pbellec almost 5 years ago - 1 comment

#14 - implement transform and inverse_transform_method

Issue - State: closed - Opened by pbellec almost 5 years ago - 1 comment

#13 - add support for load_confounds with fmriprep data

Issue - State: closed - Opened by pbellec almost 5 years ago - 3 comments

#12 - profile memory and cpu usage on cneurmod video 10

Issue - State: closed - Opened by pbellec almost 5 years ago - 1 comment

#11 - add threshold_stability in parameters description

Issue - State: closed - Opened by FrancoisPgm about 5 years ago - 1 comment

#10 - make a 0.1 release

Issue - State: closed - Opened by pbellec about 5 years ago - 1 comment

#9 - add tests

Issue - State: closed - Opened by pbellec about 5 years ago - 1 comment

#8 - update requirements

Issue - State: closed - Opened by pbellec about 5 years ago

#7 - Iss1

Pull Request - State: closed - Opened by pbellec about 5 years ago

#6 - Iss2

Pull Request - State: closed - Opened by pbellec about 5 years ago

#5 - benchmark kmodel for consensus clustering

Issue - State: closed - Opened by pbellec about 5 years ago - 1 comment

#4 - Add progress verbose

Issue - State: closed - Opened by pbellec about 5 years ago

#3 - better procedure to "trim" clusters

Issue - State: closed - Opened by pbellec about 5 years ago - 1 comment

#2 - store onehot as binary arrays

Issue - State: closed - Opened by pbellec about 5 years ago - 2 comments

#1 - use sliding windows uniformly distributerd instead of random

Issue - State: closed - Opened by FrancoisPgm about 5 years ago

GitHub / courtois-neuromod/dypac issues and pull requests