counsyl/stor issues and pull requests

#150 - Move swift and dxpy into extras

Pull Request - State: open - Opened by jtratner 9 months ago

#149 - Fix tests by removing deprecated python 3.6 from test matrix

Pull Request - State: closed - Opened by jtratner 9 months ago

#148 - Bump certifi from 2020.4.5.1 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#147 - Bump babel from 2.8.0 to 2.9.1

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#146 - Bump py from 1.8.1 to 1.11.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#145 - Bump pygments from 2.6.1 to 2.7.4

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#144 - Update stor upload, download to work on AWS lambda for python3.8 runtime

Pull Request - State: closed - Opened by scdunatun over 1 year ago - 3 comments

#143 - Guard dxpy imports so dnanexus and swift can actually be optional

Pull Request - State: open - Opened by jtratner about 3 years ago

#142 - Support mixed canonical paths

Pull Request - State: open - Opened by jtratner almost 4 years ago

#141 - Version 4.0.2, update release notes.

Pull Request - State: closed - Opened by pkaleta almost 4 years ago

#140 - fix DeprecationWarning

Pull Request - State: closed - Opened by ying-w over 4 years ago

#139 - More verbose error msg.

Pull Request - State: closed - Opened by pkaleta over 4 years ago

#138 - add read mode for dxpy

Pull Request - State: open - Opened by ying-w over 4 years ago - 1 comment

#137 - Import issue with optional dependencies in S3/DX codepath

Issue - State: open - Opened by kyleabeauchamp over 4 years ago

#136 - Add trailing slash to file_proxy_url if absent.

Pull Request - State: closed - Opened by pkaleta over 4 years ago - 2 comments

#135 - Fix version generation and tag creation.

Pull Request - State: closed - Opened by pkaleta almost 5 years ago

#134 - Update temp_url helptext when filename=''

Pull Request - State: closed - Opened by jtratner almost 5 years ago - 1 comment

#133 - Error earlier when open() called on DXProject to fix uncaught exception in `del `

Pull Request - State: closed - Opened by jtratner almost 5 years ago

#132 - Truly switch to pyproject.toml

Pull Request - State: closed - Opened by jtratner almost 5 years ago - 1 comment

#131 - Stor v4 release checklist

Issue - State: open - Opened by jtratner almost 5 years ago

#130 - Python 3 + Poetry + Github Actions testing

Pull Request - State: closed - Opened by jtratner almost 5 years ago - 5 comments

#129 - Add a `stor completions` command to generate tab completion text

Pull Request - State: closed - Opened by jtratner almost 5 years ago - 1 comment

#128 - Fix release notes

Pull Request - State: closed - Opened by jtratner almost 5 years ago - 1 comment

#127 - Add support for DNAnexus file proxy/http serving

Pull Request - State: closed - Opened by jtratner almost 5 years ago - 2 comments

#126 - For discussion: Do not block when garbage collecting OBSFile's

Pull Request - State: closed - Opened by jtratner over 5 years ago - 2 comments

#125 - Fix logic around calling wait_on_close

Pull Request - State: closed - Opened by jtratner over 5 years ago - 3 comments

#124 - Move upcoming release notes to correct place

Pull Request - State: closed - Opened by jtratner over 5 years ago

#123 - lint: removed blank line

Pull Request - State: closed - Opened by sampearl over 5 years ago - 1 comment

#122 - Release notes for seekable PR

Pull Request - State: closed - Opened by jtratner over 5 years ago - 1 comment

#121 - added readable, writable, and seekable methods to OBSFile to fully implement the io.IOBase interface

Pull Request - State: closed - Opened by sampearl over 5 years ago - 8 comments

#120 - Copying directories with DNAnexus paths includes all of source path

Issue - State: open - Opened by jtratner over 5 years ago

#119 - OBSFile does not implement seekable, readable and writeable

Issue - State: open - Opened by tophers42 over 5 years ago - 2 comments

#118 - Python 3.4 is EOL - long live python 3.7!

Pull Request - State: closed - Opened by jtratner over 5 years ago

#117 - Add content_type property for OBS paths

Pull Request - State: closed - Opened by jtratner over 5 years ago - 2 comments

#116 - Fix release notes.

Pull Request - State: closed - Opened by pkaleta over 5 years ago

#115 - Fix required version of six package.

Pull Request - State: closed - Opened by pkaleta over 5 years ago - 1 comment

#114 - Adding release notes for recent changes

Pull Request - State: open - Opened by anujkumar93 almost 6 years ago - 1 comment

#113 - Enable empty path dx:// for DXPath initialization

Pull Request - State: open - Opened by anujkumar93 almost 6 years ago

#112 - Add canonicalize flag to cli functions list ls walkfiles

Pull Request - State: closed - Opened by anujkumar93 almost 6 years ago

#111 - updating dxpy3 to dxpy

Pull Request - State: closed - Opened by anujkumar93 almost 6 years ago - 1 comment

#110 - Fix stor.exists for DXCanonicalPaths

Pull Request - State: closed - Opened by anujkumar93 almost 6 years ago

#109 - Wrap unauthorized error with suitable message

Pull Request - State: closed - Opened by anujkumar93 almost 6 years ago

#108 - stor needs to pass 'rb' flag to dxpy

Issue - State: open - Opened by ying-w almost 6 years ago - 1 comment

#107 - Posix to DX copy should delete dest file, if already existing

Pull Request - State: closed - Opened by anujkumar93 almost 6 years ago

#106 - Add functionality in stor to query available DNAnexus projects

Pull Request - State: closed - Opened by anujkumar93 almost 6 years ago - 2 comments

#105 - Fix joinpath and splitpath for DXPaths

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 8 comments

#104 - Fix for normpath for DXPath

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 1 comment

#103 - Have a single install for stor to include all the packages

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#102 - Docs and manifest update after splitting packages

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#101 - Consolidating separating individual modules into their packages

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 4 comments

#100 - Preparing the modules to be split

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#99 - split open; is_writeable function and tests of utils

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#98 - Splitting copy/copytree across packages and changing its signature

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 2 comments

#97 - Split stor into 4 packages- stor, stor_swift, stor_s3, stor_dx

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 1 comment

#96 - Split stor into 4 modules, for packaging later

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 1 comment

#95 - DNAnexus v1

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#94 - Fixed integration tests and login_auth test

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 1 comment

#93 - made wait_on_close default to 0 and added docs

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#92 - open fix for swift and s3

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 3 comments

#91 - doc removal of swiftfile

Pull Request - State: closed - Opened by jtratner about 6 years ago - 1 comment

#90 - update Makefile to include dx integration test help message

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#89 - Implementing wait_on_close upon open dx paths

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago - 1 comment

#88 - Simplify open arguments

Pull Request - State: closed - Opened by jtratner about 6 years ago

#87 - Only allow bytes for write_object in Python 3

Pull Request - State: closed - Opened by jtratner about 6 years ago

#86 - Stor-dx Release Notes

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#85 - Implemented normpath and changed urllib to requests

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#84 - Implemented cli capabilities for dx

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#83 - Implement cli capabilities for dx paths

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#82 - Cli changes for DX

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#81 - Support DNAnexus paths within stor

Pull Request - State: closed - Opened by anujkumar93 about 6 years ago

#80 - For review: DNAnexus support

Pull Request - State: closed - Opened by jtratner about 6 years ago

#79 - Better progress logger for stor

Pull Request - State: open - Opened by jtratner over 6 years ago - 2 comments

#78 - stor cp -r silently fails on individual files

Issue - State: closed - Opened by kyleabeauchamp over 6 years ago - 2 comments

#77 - stor errors out when using pandas v0.23.1

Issue - State: closed - Opened by grepinsight over 6 years ago - 2 comments

#76 - xopen: open gzipped files transparently

Pull Request - State: open - Opened by kristjaneerik almost 7 years ago - 4 comments

#75 - Retry upload on AuthenticationError.

Pull Request - State: closed - Opened by pkaleta almost 7 years ago - 3 comments

#74 - stor.copy fails on windows

Issue - State: open - Opened by pkaleta almost 7 years ago - 1 comment

#73 - Convert README to restructured text

Pull Request - State: closed - Opened by jtratner almost 7 years ago - 2 comments

#72 - Clarify license and ensure included with source

Pull Request - State: closed - Opened by jtratner almost 7 years ago

#71 - Add S3Path.restore to restore objects from Glacier to S3

Pull Request - State: closed - Opened by jtratner almost 7 years ago - 2 comments

#70 - Make s3 test bucket configurable + append UUID to bucket name

Pull Request - State: closed - Opened by jtratner almost 7 years ago - 2 comments

#69 - Remove deprecated top-level methods

Pull Request - State: closed - Opened by jtratner almost 7 years ago - 1 comment

#68 - Support from_url for swift paths

Issue - State: open - Opened by jtratner about 7 years ago
Labels: good first issue

#67 - Do not generate buffers just to close them.

Pull Request - State: closed - Opened by jtratner about 7 years ago - 2 comments

#66 - Make swift / s3 requirements optional

Issue - State: open - Opened by jtratner about 7 years ago
Labels: good first issue

#65 - Add `to_url()` method on Path and `url` cli

Pull Request - State: closed - Opened by jtratner about 7 years ago - 8 comments

#64 - Raise informative error on GETs from objects in Glacier

Pull Request - State: closed - Opened by jtratner about 7 years ago - 2 comments

#63 - Swiftstack to s3 path

Pull Request - State: closed - Opened by jtratner about 7 years ago - 1 comment

#62 - More aggressively validate ambiguous file paths

Pull Request - State: open - Opened by jtratner about 7 years ago

#61 - WIP: Copy obs to obs

Pull Request - State: closed - Opened by jtratner about 7 years ago

#60 - Add makedirs_p to cross-compatible API

Pull Request - State: closed - Opened by jtratner about 7 years ago - 1 comment

#59 - Refactor tests and add documentation

Pull Request - State: closed - Opened by jtratner about 7 years ago - 3 comments

#58 - Expose stor.utils.is_obs_path

Pull Request - State: closed - Opened by jtratner about 7 years ago - 5 comments

#57 - DRY Exception Hierarchy

Pull Request - State: closed - Opened by jtratner about 7 years ago - 1 comment

#56 - Set universal flag now that we are python2/3 compatible

Pull Request - State: closed - Opened by jtratner about 7 years ago - 1 comment

#55 - Fix up python 3-compatible stor for release

Pull Request - State: closed - Opened by jtratner about 7 years ago - 2 comments

#50 - Clean up exceptions in OBSFile.del

Issue - State: closed - Opened by jtratner over 7 years ago - 1 comment

#47 - Support named temporary files context manager.

Issue - State: open - Opened by kyleabeauchamp over 7 years ago - 2 comments
Labels: help wanted

#46 - Show progress bar rather than our log format (e.g., via tqdm)

Issue - State: open - Opened by jtratner over 7 years ago
Labels: good first issue

#44 - Improve docstrings

Issue - State: open - Opened by kyleabeauchamp over 7 years ago
Labels: good first issue

GitHub / counsyl/stor issues and pull requests