cortex-lab/phylib issues and pull requests

#47 - Question about suppressing errors in `model.py`

Issue - State: open - Opened by tabedzki 5 months ago

#46 - suggestion to reduce disk footprint of spikes object

Pull Request - State: closed - Opened by oliche 8 months ago

#45 - Catch error on get spike waveform and try to get raw data

Pull Request - State: closed - Opened by ponytojas 9 months ago

#44 - phy extract-waveforms saves waveforms with wrong dtype if raw data file is encoded as float32

Issue - State: open - Opened by johnmbarrett 9 months ago

#43 - 2.5.0

Pull Request - State: closed - Opened by chris-langfield 9 months ago

#42 - error getting n_spikes from get_cluster_spike_waveforms

Issue - State: open - Opened by jennifertsai 12 months ago

#41 - Fix broken `_load_channel_shanks()`.

Pull Request - State: open - Opened by JoeZiminski about 1 year ago - 3 comments

#40 - Change `np.in1d` into `np.isin` as `np.in1d` will be deprecated with new versions of NumPy

Pull Request - State: closed - Opened by zm711 over 1 year ago - 4 comments

#39 - phy crashes with nans in data_bounds

Issue - State: open - Opened by McKenzieNeuro almost 2 years ago

#38 - Traces warning

Pull Request - State: closed - Opened by mayofaulkner about 2 years ago

#37 - Verify number of channels before loading data

Pull Request - State: closed - Opened by kushbanga over 2 years ago

#36 - Alf conversion merge

Pull Request - State: closed - Opened by mayofaulkner over 2 years ago

#35 - Make default FlatEphysReader mode r instead of r+

Pull Request - State: closed - Opened by alejoe91 over 2 years ago - 1 comment

#34 - Add mode keyword argument to FlatEphysReader class

Pull Request - State: closed - Opened by kushbanga almost 3 years ago

#33 - Get spike depths without pc_features.npy or pc_features_ind.npy

Issue - State: closed - Opened by peterzh over 3 years ago - 1 comment

#32 - new release on pypi in advance of pykilosort release?

Issue - State: open - Opened by marius10p over 3 years ago

#31 - TemplateFeature sparse->full transform messed up if there are < 32 clusters

Issue - State: open - Opened by lshaheen almost 4 years ago

#30 - Single template

Issue - State: open - Opened by yagui about 4 years ago

#29 - Alf export IBL

Pull Request - State: closed - Opened by oliche over 4 years ago - 3 comments

#28 - Patch to support .mda

Pull Request - State: closed - Opened by yger over 4 years ago - 1 comment

#27 - Phylib not working with single channel templates

Pull Request - State: closed - Opened by yger over 4 years ago - 2 comments

#26 - Ibl tests

Pull Request - State: closed - Opened by oliche over 4 years ago - 1 comment

#25 - Can not open binary file with esoteric extension ?

Issue - State: closed - Opened by yger almost 5 years ago - 2 comments

#24 - bug when run from pykilosort

Issue - State: closed - Opened by m-beau almost 5 years ago - 1 comment

#23 - Fix amps

Pull Request - State: closed - Opened by oliche almost 5 years ago - 1 comment

#22 - New whitening matrix and _phy_ dstypes for sample waveforms

Pull Request - State: closed - Opened by nbonacchi almost 5 years ago

#21 - convert amp values to V

Pull Request - State: closed - Opened by jkbhagatio almost 5 years ago - 4 comments

#20 - added function to compute spike depths

Pull Request - State: closed - Opened by jkbhagatio almost 5 years ago - 2 comments

#19 - Fix same_kind numpy multiplication

Pull Request - State: closed - Opened by alejoe91 about 5 years ago - 10 comments

#18 - Fix workaround dense templates incorrectly saved as dense templates

Pull Request - State: closed - Opened by balefebvre about 5 years ago - 8 comments
Labels: bug

#17 - Ibl features

Pull Request - State: closed - Opened by oliche about 5 years ago - 1 comment

#16 - Ibl features

Pull Request - State: closed - Opened by oliche about 5 years ago - 1 comment

#15 - Ibl merge qc

Pull Request - State: closed - Opened by oliche about 5 years ago - 1 comment

#14 - fix 3.6 versus 3.7 memmap indexing bug

Pull Request - State: closed - Opened by oliche over 5 years ago - 1 comment

#13 - Fix cluster indexing bug in merge probe

Pull Request - State: closed - Opened by oliche over 5 years ago - 1 comment

#12 - More memory-efficient ALF merging of large arrays

Issue - State: closed - Opened by rossant over 5 years ago
Labels: enhancement

#11 - Minor shift in y axis between raw/mean/template

Issue - State: closed - Opened by yger over 5 years ago - 1 comment
Labels: bug

#10 - Fix for sparse export

Pull Request - State: closed - Opened by yger over 5 years ago - 1 comment
Labels: bug

#9 - Bug for sparse export

Issue - State: closed - Opened by yger over 5 years ago - 1 comment
Labels: bug

#8 - Merge multiple probes into a single ALF dataset

Pull Request - State: closed - Opened by oliche over 5 years ago - 1 comment
Labels: feature

#7 - Use dask internally for virtual array concatenation

Issue - State: closed - Opened by rossant over 5 years ago
Labels: enhancement

#6 - Adding a Refractory Period Violation number somewhere

Issue - State: closed - Opened by yger over 5 years ago - 2 comments

#5 - Support multiple file formats for the raw data

Issue - State: open - Opened by rossant over 5 years ago - 11 comments
Labels: feature

#4 - Olive

Pull Request - State: closed - Opened by oliche over 5 years ago - 1 comment

#3 - _load_ function problems

Issue - State: closed - Opened by adehad over 5 years ago - 10 comments

#2 - Force str() to os calls for Windows

Pull Request - State: closed - Opened by alejoe91 over 5 years ago - 1 comment

#1 - if spike_clusters.npy doesn't exist, fails to load template-gui

Issue - State: closed - Opened by yagui over 5 years ago - 1 comment

GitHub / cortex-lab/phylib issues and pull requests