coralnet/pyspacer issues and pull requests

#107 - Bump pyspacer version to 0.10.0

Pull Request - State: closed - Opened by StephenChan 2 months ago

#106 - Restrict numpy to below version 2 + small reqs technicalities

Pull Request - State: closed - Opened by StephenChan 2 months ago

#105 - AWS credentials through metadata service or boto auto-detection

Pull Request - State: closed - Opened by StephenChan 2 months ago - 2 comments

#104 - Allow using AWS metadata service when available.

Pull Request - State: closed - Opened by michaelconnor00 3 months ago - 4 comments

#103 - unexpected error from return_msg

Issue - State: open - Opened by yeelauren 7 months ago

#102 - Bump pillow from 10.2.0 to 10.3.0 in /requirements

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#101 - Bump pyspacer version to 0.9.0

Pull Request - State: closed - Opened by StephenChan 8 months ago

#100 - Add `TRAINING_BATCH_LABEL_COUNT` to `CONFIGURABLE_VARS`

Pull Request - State: closed - Opened by StephenChan 8 months ago

#99 - Output additional plots and statistics

Issue - State: open - Opened by yeelauren 8 months ago

#98 - Class imbalance concerns

Issue - State: open - Opened by StephenChan 8 months ago

#97 - Enhance annotation sampling for training, v2

Pull Request - State: closed - Opened by StephenChan 8 months ago - 6 comments

#96 - Supported Pythons: 3.8 to 3.10 -> 3.10 to 3.11

Pull Request - State: closed - Opened by StephenChan 8 months ago - 2 comments

#95 - Accept int or str as label ID, not just int

Pull Request - State: closed - Opened by StephenChan 8 months ago - 1 comment

#94 - (See PR #95 instead)

Pull Request - State: closed - Opened by StephenChan 9 months ago - 1 comment

#93 - (See PR #94 instead)

Pull Request - State: closed - Opened by StephenChan 9 months ago - 1 comment

#92 - Bump pyspacer version to 0.8.0

Pull Request - State: closed - Opened by StephenChan 10 months ago

#91 - Update Pillow requirement to >=10.2.0

Pull Request - State: closed - Opened by StephenChan 10 months ago

#90 - Add timeout to URLStorage's urlopen() usages

Pull Request - State: closed - Opened by StephenChan 10 months ago

#89 - Update torch_utils.py to use gpu if available

Pull Request - State: closed - Opened by yeelauren 10 months ago - 1 comment

#88 - Fix bucket_name bucketname consistency

Pull Request - State: closed - Opened by yeelauren 10 months ago - 3 comments

#87 - S3 downloads are now always performed in the main thread

Pull Request - State: closed - Opened by StephenChan 10 months ago

#86 - Bump pillow from 10.1.0 to 10.2.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#85 - Improved training sampling + cache features (combining two WIP branches)

Pull Request - State: closed - Opened by StephenChan 10 months ago - 2 comments

#84 - WIP: improve annotation sampling for training

Pull Request - State: closed - Opened by StephenChan 10 months ago - 5 comments

#83 - Don't accept no-rowcol features for training anymore

Pull Request - State: closed - Opened by StephenChan 10 months ago

#82 - No-rowcol ImageFeatures are problematic when filtering classes before training

Issue - State: closed - Opened by StephenChan 10 months ago - 1 comment

#81 - Bump version to 0.7.0

Pull Request - State: closed - Opened by StephenChan 10 months ago

#80 - Training: cache feature vectors for 2nd epoch onward

Pull Request - State: closed - Opened by StephenChan 11 months ago - 3 comments

#79 - Allow int config vars to be configured through env-vars or secrets

Pull Request - State: closed - Opened by StephenChan 11 months ago

#78 - Training: image-based batch size can lead to very uneven batches

Issue - State: closed - Opened by StephenChan 11 months ago - 1 comment

#77 - Reuse S3 connection (resource) through thread's lifetime

Pull Request - State: closed - Opened by StephenChan 11 months ago - 2 comments

#76 - Logging: Use getLogger() + provide optional logging config

Pull Request - State: closed - Opened by StephenChan 11 months ago

#75 - Training: stop earlier than 10 epochs in some cases

Issue - State: open - Opened by StephenChan 11 months ago

#74 - Training with GPU; requires replacing scikit-learn

Issue - State: open - Opened by StephenChan 11 months ago - 10 comments

#73 - Train time seems to depend heavily on image count

Issue - State: closed - Opened by StephenChan 11 months ago - 14 comments

#72 - Use newer type hint syntax

Pull Request - State: closed - Opened by StephenChan 11 months ago

#71 - Training: specifying ref set + filtering by class + better batching

Pull Request - State: closed - Opened by StephenChan 11 months ago - 4 comments

#70 - Some more descriptive error classes

Pull Request - State: closed - Opened by StephenChan 11 months ago

#69 - Minimal Docker Example, fixed imports, refactored S3 data, tests

Pull Request - State: closed - Opened by yeelauren 12 months ago - 2 comments

#68 - Imports incorrect for some tests

Issue - State: open - Opened by yeelauren 12 months ago - 4 comments

#67 - Extractor hash check fix

Pull Request - State: closed - Opened by StephenChan about 1 year ago

#66 - Pillow version to 10.x

Pull Request - State: closed - Opened by StephenChan about 1 year ago

#65 - DummyExtractor: fix data_locations default value in constructor

Pull Request - State: closed - Opened by StephenChan about 1 year ago

#64 - Bump pillow from 9.4.0 to 10.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#63 - Update GitHub workflow for PySpacer 0.5.0 & default branch rename

Pull Request - State: closed - Opened by StephenChan about 1 year ago

#62 - Allow extractors to be loaded from anywhere, not just CoralNet S3

Pull Request - State: closed - Opened by StephenChan about 1 year ago - 1 comment

#61 - requirements.txt: Comments to clarify what some packages are used for

Pull Request - State: closed - Opened by StephenChan about 1 year ago

#60 - Training reference set is inflexible, making label inclusion unpredictable

Issue - State: closed - Opened by StephenChan about 1 year ago - 4 comments

#59 - Training mini-batch size is bespoke to CoralNet instance specs

Issue - State: closed - Opened by StephenChan about 1 year ago - 1 comment

#58 - README: Add new section for describing the main API + a few clarifications

Pull Request - State: closed - Opened by StephenChan about 1 year ago - 2 comments

#57 - Update repo URLs from beijbom to coralnet

Pull Request - State: closed - Opened by StephenChan over 1 year ago

#56 - Config enhancements, including a new config-check function

Pull Request - State: closed - Opened by StephenChan over 1 year ago

#55 - Bump torch from 1.4.0 to 1.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#54 - Python 3.10 support + package updates + more

Pull Request - State: closed - Opened by StephenChan almost 2 years ago - 1 comment

#53 - Try to speed up large training jobs

Issue - State: closed - Opened by StephenChan almost 2 years ago - 9 comments

#52 - Bump pillow from 6.2.2 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#51 - Bump numpy from 1.18.1 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#50 - Raise different error class for image-download errors

Pull Request - State: closed - Opened by StephenChan over 2 years ago - 1 comment

#49 - GH Action: Try older pip versions on the scikit-image install

Pull Request - State: closed - Opened by StephenChan over 2 years ago - 1 comment

#49 - GH Action: Try older pip versions on the scikit-image install

Pull Request - State: closed - Opened by StephenChan over 2 years ago - 1 comment

#48 - Fix build: Start using GitHub Actions + Replace test image URL

Pull Request - State: closed - Opened by StephenChan over 2 years ago - 8 comments

#47 - Switch from Travis CI to GitHub Actions

Issue - State: closed - Opened by StephenChan over 2 years ago - 1 comment

#46 - Consider using GitHub's LFS to tie large test files to the repo

Issue - State: open - Opened by StephenChan over 2 years ago - 1 comment

#45 - Replace test image URL; original is no longer available

Pull Request - State: closed - Opened by StephenChan over 2 years ago - 2 comments

#45 - Replace test image URL; original is no longer available

Pull Request - State: closed - Opened by StephenChan over 2 years ago - 2 comments

#44 - Bump pillow from 6.2.2 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#43 - Bump pillow from 6.2.2 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#42 - Bump pillow from 6.2.2 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#42 - Bump pillow from 6.2.2 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#41 - Bump pillow from 6.2.2 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#41 - Bump pillow from 6.2.2 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#40 - Built-in weights

Pull Request - State: closed - Opened by beijbom over 3 years ago

#40 - Built-in weights

Pull Request - State: closed - Opened by beijbom over 3 years ago

#39 - Bump pillow from 6.2.2 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#39 - Bump pillow from 6.2.2 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#38 - AssertionError when retraining s2099

Issue - State: open - Opened by qiminchen almost 4 years ago - 19 comments
Labels: bug, help wanted

#37 - allowed different length row, col if using new feature data-struct

Pull Request - State: closed - Opened by beijbom almost 4 years ago

#36 - Bump pillow from 6.2.2 to 7.1.0

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#35 - Classify image bugfixes

Pull Request - State: closed - Opened by beijbom about 4 years ago

#34 - Permissions hot-fix

Pull Request - State: closed - Opened by beijbom about 4 years ago

#33 - Changed to compressed numpy array for storing features

Pull Request - State: closed - Opened by beijbom about 4 years ago - 6 comments

#32 - simplified extract_features message

Pull Request - State: closed - Opened by beijbom about 4 years ago

#31 - EfficientNet extractor slow for large number of points per image.

Issue - State: closed - Opened by beijbom about 4 years ago - 25 comments
Labels: help wanted

#30 - Better logging, migrate to boto3, simply submit_classifier call.

Pull Request - State: closed - Opened by beijbom about 4 years ago - 9 comments

#29 - AWS Batch bindings

Pull Request - State: closed - Opened by beijbom about 4 years ago

#28 - New EfficientNet-B0 / MLP classifier deployment

Pull Request - State: closed - Opened by qiminchen about 4 years ago - 19 comments

#27 - sumcheck and replace with new model weight

Pull Request - State: closed - Opened by qiminchen over 4 years ago - 2 comments
Labels: enhancement

#26 - Integration shakeout

Pull Request - State: closed - Opened by beijbom over 4 years ago

#25 - Minor integration fixes

Pull Request - State: closed - Opened by beijbom over 4 years ago

#24 - numpy vs pil simple memory usage

Pull Request - State: closed - Opened by qiminchen over 4 years ago - 4 comments
Labels: enhancement

#23 - Release 0.2

Pull Request - State: closed - Opened by beijbom over 4 years ago

#22 - unit-tests fail on master (#21)

Pull Request - State: closed - Opened by qiminchen over 4 years ago - 16 comments
Labels: bug

#21 - unit-tests fail on master

Issue - State: closed - Opened by beijbom over 4 years ago - 2 comments

#20 - Download of default efficientnet-b0

Issue - State: closed - Opened by beijbom over 4 years ago

#18 - minor update

Pull Request - State: closed - Opened by qiminchen over 4 years ago - 10 comments
Labels: bug

#17 - AWS sqs deploy scripts.

Pull Request - State: closed - Opened by beijbom over 4 years ago - 14 comments

#16 - Script cleanup

Pull Request - State: closed - Opened by beijbom over 4 years ago - 1 comment

#15 - efficientnet feature extractor

Pull Request - State: closed - Opened by qiminchen over 4 years ago - 13 comments

#14 - updated docker, muted warnings, added regression tests

Pull Request - State: closed - Opened by beijbom over 4 years ago

#13 - [no merge] Debug scripts and loggers

Pull Request - State: closed - Opened by beijbom over 4 years ago

GitHub / coralnet/pyspacer issues and pull requests