const-ae/proda issues and pull requests

#23 - Error in nlminb(), NA/NaN gradient evaluation

Issue - State: open - Opened by Sasimonthakan about 1 month ago - 1 comment

#22 - check sigma2 for 0

Pull Request - State: closed - Opened by elena-krismer about 1 year ago

#21 - Sigma is 0 when calculating hess_fnc

Issue - State: closed - Opened by elena-krismer about 1 year ago - 3 comments

#20 - constitutively missing peptides/proteins across "runs"

Issue - State: open - Opened by amackey about 2 years ago - 1 comment

#19 - NA dropout_curve parameters

Issue - State: open - Opened by amackey about 2 years ago - 2 comments

#18 - fix position/scale typo; streamline logic

Pull Request - State: closed - Opened by amackey about 2 years ago - 1 comment

#17 - Pre-filtering steps and requirements per sample

Issue - State: open - Opened by joannawolthuis over 2 years ago - 3 comments

#16 - Equivalent of Fold-Change analysis?

Issue - State: open - Opened by joannawolthuis over 2 years ago - 8 comments

#15 - quick question: data with no replication

Issue - State: closed - Opened by hukai916 over 2 years ago - 4 comments

#14 - different results for some proteins depending test used.

Issue - State: open - Opened by wolski over 2 years ago

#13 - dist_approx() not stable

Issue - State: open - Opened by hukai916 almost 3 years ago

#12 - Can proDA be used for paired data?

Issue - State: closed - Opened by hukai916 almost 3 years ago - 1 comment

#11 - Why Intensity over iBAQ?

Issue - State: open - Opened by hukai916 almost 3 years ago - 2 comments

#10 - Modelling repeated measurements in the presence of missing observations.

Issue - State: closed - Opened by wolski about 3 years ago - 10 comments

#9 - improve speed of function fit_parameters_loop

Pull Request - State: open - Opened by tnaake almost 4 years ago - 2 comments

#8 - speed up lm_pd.fit

Pull Request - State: closed - Opened by tnaake almost 4 years ago - 15 comments

#7 - Creating heatmap of protein expression across conditions with proDA package

Issue - State: closed - Opened by arjun0502 almost 4 years ago - 1 comment

#6 - import_MaxQuant filter

Issue - State: open - Opened by demar01 almost 4 years ago - 1 comment

#5 - proDA not on CRAN anymore?

Issue - State: closed - Opened by jpquast about 4 years ago - 1 comment

#4 - model contrasts

Issue - State: closed - Opened by abrozzi over 4 years ago - 6 comments

#3 - Replacing 0's by NA's on log transformed data

Issue - State: closed - Opened by phauchamps about 5 years ago - 7 comments

#2 - Added link to preprint to README, 2nd try

Pull Request - State: closed - Opened by simon-anders over 5 years ago - 1 comment

#1 - Added link to preprint to README