Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / computational-metabolomics/msPurity issues and pull requests
#106 - [frag4feature] XCMS features/MS2 events linkage
Issue -
State: closed - Opened by Hrodwin 3 months ago
- 6 comments
#100 - msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
Issue -
State: closed - Opened by hannierpulido about 2 years ago
- 7 comments
#99 - Error about creating a spectral-database
Issue -
State: closed - Opened by g0079 about 2 years ago
- 1 comment
#98 - Update createMSP to use median mz and RT values
Pull Request -
State: closed - Opened by Tomnl over 2 years ago
#97 - createMSP the precursor mz and retention time stored in the MSP file - should be the median
Issue -
State: closed - Opened by Tomnl over 2 years ago
#96 - unused argument (xcmsObj = xcmsObj)
Issue -
State: closed - Opened by cyan20200410 over 2 years ago
- 2 comments
#95 - Installing the msPurity package in R studio
Issue -
State: closed - Opened by Haassress over 2 years ago
- 8 comments
#94 - 1.12.2 - small updates due to changes in versions of mzR, XCMS and R v4.2
Pull Request -
State: closed - Opened by Tomnl over 2 years ago
#93 - v1.21.1 - bugfix for frag4feature using unconverted xcms v3 object
Pull Request -
State: closed - Opened by M-R-JONES over 2 years ago
#92 - Remove f_nms variable which is undefined
Pull Request -
State: closed - Opened by Tomnl over 2 years ago
#91 - 1.19.2 - xcms3 updates
Pull Request -
State: closed - Opened by M-R-JONES about 3 years ago
Labels: enhancement
#90 - bug fix for calculated full width for flag remove function
Pull Request -
State: closed - Opened by Tomnl over 3 years ago
#89 - frag4feature updates for xcms3
Pull Request -
State: closed - Opened by M-R-JONES over 3 years ago
- 1 comment
#88 - Processing Agilent QToF files
Issue -
State: closed - Opened by yguitton over 3 years ago
- 3 comments
#87 - Update bio.tools entry
Issue -
State: open - Opened by hechth over 3 years ago
#86 - Any plan to implement HAMMER's probability score and matching distance score into the spectral matching module?
Issue -
State: open - Opened by xiaodfeng over 3 years ago
Labels: enhancement, question
#85 - Auth fix 1.16.2 1.17.2
Pull Request -
State: closed - Opened by Tomnl almost 4 years ago
#84 - intra db fix, licenses, github workflows (v1.16.1 & v1.17.1)
Pull Request -
State: closed - Opened by Tomnl almost 4 years ago
#83 - intra db fix, licences, github workflows
Pull Request -
State: closed - Opened by Tomnl almost 4 years ago
#82 - v1.14.1 bug fixes
Pull Request -
State: closed - Opened by Tomnl about 4 years ago
#81 - Spectral matching RA check fix
Pull Request -
State: closed - Opened by Tomnl about 4 years ago
- 1 comment
#80 - Reverse dot product cosine (rdpc) fix
Pull Request -
State: closed - Opened by Tomnl about 4 years ago
- 1 comment
#79 - Correction for the align function in the spectralMatching.R
Issue -
State: closed - Opened by xiaodfeng about 4 years ago
- 2 comments
#78 - Correction for the reverse dot product cosine (rpdc) in the spectralMatching module
Issue -
State: closed - Opened by xiaodfeng about 4 years ago
- 4 comments
#77 - Convert compound name to database ID
Issue -
State: closed - Opened by hh1985 over 4 years ago
- 4 comments
#76 - msPurity spectralMatching empty for negative mode
Issue -
State: closed - Opened by yguitton over 4 years ago
- 3 comments
#75 - createDatabase function
Issue -
State: closed - Opened by jsaintvanne over 4 years ago
- 13 comments
#74 - Any suggestion to summarize xcmsMatchedResults?
Issue -
State: closed - Opened by hh1985 over 4 years ago
- 6 comments
#73 - 1.14.1 - spectralMatching using 'scan' spectra type bug fix & documentation update
Pull Request -
State: closed - Opened by Tomnl over 4 years ago
- 1 comment
#72 - v1.12.2 bug fix
Pull Request -
State: closed - Opened by Tomnl over 4 years ago
- 1 comment
#71 - Bug fix 1.12.1
Pull Request -
State: closed - Opened by Tomnl almost 5 years ago
- 1 comment
#70 - Update typo in docs
Pull Request -
State: closed - Opened by Tomnl almost 5 years ago
#69 - [WIP] New function
Pull Request -
State: closed - Opened by jsaintvanne almost 5 years ago
- 3 comments
#68 - update for fillpeaks bug
Pull Request -
State: closed - Opened by jsaintvanne about 5 years ago
- 9 comments
#67 - fillChromPeaks and NA values
Issue -
State: closed - Opened by jsaintvanne about 5 years ago
- 7 comments
#66 - Correct ddply
Pull Request -
State: closed - Opened by jsaintvanne about 5 years ago
- 8 comments
#65 - v1.11.5-dev
Pull Request -
State: closed - Opened by Tomnl about 5 years ago
- 1 comment
#64 - Bug fix for fileid tracking
Pull Request -
State: closed - Opened by Tomnl about 5 years ago
- 1 comment
#63 - createDatabase low memory version
Issue -
State: open - Opened by Tomnl about 5 years ago
Labels: enhancement
#62 - v1.11.4
Pull Request -
State: closed - Opened by Tomnl about 5 years ago
- 1 comment
#61 - Combine ann fix
Pull Request -
State: closed - Opened by Tomnl about 5 years ago
- 1 comment
#60 - Further doc updates
Pull Request -
State: closed - Opened by Tomnl about 5 years ago
- 1 comment
#59 - Documation and galaxy updates
Pull Request -
State: closed - Opened by Tomnl about 5 years ago
#58 - combineAnnotation - overhaul
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#57 - createMSP - include_adducts param
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#56 - added ppm option for interpolation
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#55 - Update adduct handling for createMSP
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#54 - EIC fix for msms data
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#53 - combineAnnotation function too slow
Issue -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#52 - Bug fixes found from testing msPurity-galaxy
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#51 - Precursor ion purity calculations for mzXML and other file formats
Issue -
State: open - Opened by Tomnl over 5 years ago
Labels: enhancement
#50 - purity score calculation
Issue -
State: closed - Opened by jsaintvanne over 5 years ago
- 5 comments
#49 - Troubleshoot mac biocon failure
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#48 - Handle duplicate grpid in metadata for createMSP
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#47 - Doc review
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
- 1 comment
#46 - Final Bioconductor 3.9 update (spectralMatching, createDatabase, combineAnnotations)
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
#45 - MSnbase update
Issue -
State: open - Opened by Tomnl over 5 years ago
Labels: enhancement
#44 - Fixed devtools::test() failing if context() isn't defined
Pull Request -
State: closed - Opened by andzajan over 5 years ago
#43 - xcms3 update
Pull Request -
State: closed - Opened by jsaintvanne over 5 years ago
- 8 comments
#42 - MSP and combine annotations update
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
#41 - Combine annotation rank update
Pull Request -
State: closed - Opened by Tomnl over 5 years ago
#40 - Combine annotation (Updates for Galaxy tool)
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#39 - [WIP] Double input support
Pull Request -
State: closed - Opened by jsaintvanne almost 6 years ago
- 20 comments
#38 - Combine annotations functionality
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#37 - Spectral matching (MSP)
Issue -
State: closed - Opened by Tomnl almost 6 years ago
- 1 comment
Labels: enhancement
#36 - add filter for create msp
Pull Request -
State: closed - Opened by RJMW almost 6 years ago
#35 - minnum flag update
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#34 - Filter fragmentation prior to averaging
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#33 - averageIntraFragSpectra parameter remove_peaks = FALSE still removes spectra and features from outputs
Issue -
State: closed - Opened by andzajan almost 6 years ago
- 3 comments
#32 - Bug fix for SNR calculation for averaging
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#31 - Add feedback reference between pa@av_spectra and pa@grped_df objects
Issue -
State: open - Opened by andzajan almost 6 years ago
Labels: enhancement
#30 - minfrac pass flag bug fix
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#29 - av empty fix
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#28 - Bugfix av db
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#27 - bug fix when intra has data.frame of nrow=1
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#26 - update test for spectral matching (too time consuming)
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#25 - Spectral matching bugfix
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#24 - Spectral matching rt filter and new match factor algorithm implementation
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#23 - Database design
Issue -
State: closed - Opened by Tomnl almost 6 years ago
- 1 comment
Labels: enhancement
#22 - Average Inter fix for Galaxy
Pull Request -
State: closed - Opened by Tomnl almost 6 years ago
#21 - Split averaging function into more specific averaging functions (intra, inter, all)
Pull Request -
State: closed - Opened by RJMW almost 6 years ago
#20 - Retention time filter for spectral matching
Pull Request -
State: closed - Opened by Tomnl about 6 years ago
#19 - Retention time filter for spectral matching
Pull Request -
State: closed - Opened by Tomnl about 6 years ago
#18 - Spectral matching for LC-MS/MS
Pull Request -
State: closed - Opened by Tomnl about 6 years ago
#17 - LC-MSMS averaging and MSP creation
Pull Request -
State: closed - Opened by Tomnl about 6 years ago
#16 - Spectral matching documentation update (v1.9.1)
Pull Request -
State: closed - Opened by Tomnl about 6 years ago
#15 - [WIP] Update to be able to work with different files
Pull Request -
State: closed - Opened by jsaintvanne about 6 years ago
- 2 comments
#14 - flag remove peaks, frag4feature update, and database fixes
Pull Request -
State: closed - Opened by Tomnl over 6 years ago
#13 - Pos neg switch fix
Pull Request -
State: closed - Opened by Tomnl over 6 years ago
#12 - Database update
Pull Request -
State: closed - Opened by Tomnl over 6 years ago
#11 - Simstitch update
Pull Request -
State: closed - Opened by Tomnl about 7 years ago
#10 - Spectral matching
Pull Request -
State: closed - Opened by Tomnl about 7 years ago
#9 - removed 'filled peaks' from purityX calculation
Pull Request -
State: closed - Opened by Tomnl over 7 years ago
#8 - purityX does not work when fill peaks has been used
Issue -
State: closed - Opened by Tomnl over 7 years ago
Labels: bug
#7 - Single file xcms purity
Pull Request -
State: closed - Opened by Tomnl almost 8 years ago
#6 - purityX on single file
Issue -
State: closed - Opened by Tomnl almost 8 years ago
- 1 comment
Labels: enhancement
#5 - bug fix for groupPeaks
Pull Request -
State: closed - Opened by Tomnl almost 8 years ago
#4 - groupPeaks function (clustering bug)
Issue -
State: closed - Opened by Tomnl almost 8 years ago
- 1 comment
Labels: bug
#3 - Isotopes
Pull Request -
State: closed - Opened by Tomnl almost 8 years ago
#2 - Spectral matching
Issue -
State: closed - Opened by Tomnl almost 8 years ago
Labels: enhancement