Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / compomics/DeepLC issues and pull requests
#80 - Update test.yml
Pull Request -
State: closed - Opened by RobbinBouwmeester about 2 months ago
#79 - Update to tf 2.15 >
Pull Request -
State: closed - Opened by RobbinBouwmeester about 2 months ago
#78 - Documentation or reference for missing models
Issue -
State: open - Opened by vrkosk 2 months ago
- 2 comments
#77 - Datasets
Issue -
State: open - Opened by xiaosiruwei 2 months ago
- 1 comment
#76 - Take Unimod modification compositions from psims.controlled_vocabulary.unimod
Issue -
State: open - Opened by vrkosk 3 months ago
- 2 comments
#75 - Tons of warnings when using iTRAQ4plex or iTRAQ8plex
Issue -
State: open - Opened by vrkosk 3 months ago
- 3 comments
#74 - Cholesky AttributeError from DeepLC fix by down versioning to scikit-learn==1.3.2, scipy==1.11.4
Issue -
State: closed - Opened by KarlClauser 3 months ago
- 1 comment
#73 - Documentation: table of peptide properties of training data sets
Issue -
State: closed - Opened by vrkosk 4 months ago
- 2 comments
#72 - Fix GUI publish workflow
Pull Request -
State: closed - Opened by RalfG 6 months ago
#71 - GUI DeepLC errors
Issue -
State: closed - Opened by MassambaNdiaye 6 months ago
- 3 comments
#70 - data set
Issue -
State: closed - Opened by HR-RH 7 months ago
#69 - Update CI workflows
Pull Request -
State: closed - Opened by RalfG 8 months ago
#68 - Avoid some dependencies
Pull Request -
State: closed - Opened by RalfG 8 months ago
#67 - How can I get the PSI-MS format for the 'modifications' column?
Issue -
State: closed - Opened by ec-ho-ra-mos 11 months ago
- 12 comments
#66 - How is it possible to predict RT when DeepLC doesnt know the LC gradient
Issue -
State: closed - Opened by candidaorelmex 11 months ago
- 4 comments
#65 - change pypi to token
Pull Request -
State: closed - Opened by RobbinBouwmeester about 1 year ago
#64 - Minor tweaks
Pull Request -
State: closed - Opened by RalfG about 1 year ago
#63 - Training new models
Issue -
State: closed - Opened by KarlClauser about 1 year ago
- 3 comments
#62 - How to configure support for selenocysteine in its carbamidomethylated form?
Issue -
State: closed - Opened by KarlClauser about 1 year ago
- 2 comments
#61 - Minor tweaks to plotting code, fix missing entry in manifest
Pull Request -
State: closed - Opened by RalfG about 1 year ago
Labels: bug, enhancement
#60 - Fix memory leak due to repeatedly calling model.predict(...)
Pull Request -
State: closed - Opened by markmipt about 1 year ago
#59 - Pygam calibration is the only option in the latest version
Issue -
State: closed - Opened by markmipt about 1 year ago
- 5 comments
#58 - batch_num is not used anymore in the resent versions
Issue -
State: closed - Opened by markmipt about 1 year ago
- 3 comments
#57 - deeplc gui
Issue -
State: closed - Opened by HR-RH about 1 year ago
- 4 comments
#56 - Error during calibration using modified peptides
Issue -
State: closed - Opened by steffenlem over 1 year ago
- 4 comments
#55 - I cannot run it on website when my file getting bigger
Issue -
State: closed - Opened by hetaofan over 1 year ago
- 2 comments
#54 - Low prediction accuracy for versions 2.0.4+
Issue -
State: closed - Opened by markmipt over 1 year ago
- 3 comments
#53 - error using GUI to predict rt
Issue -
State: closed - Opened by sehooni over 1 year ago
- 3 comments
#52 - Fix Streamlit web server
Pull Request -
State: closed - Opened by RalfG over 1 year ago
#51 - Psm utils integration
Pull Request -
State: closed - Opened by RobbinBouwmeester over 1 year ago
#50 - fix load model
Pull Request -
State: closed - Opened by ArthurDeclercq over 1 year ago
#49 - Optimized library usage (~85% reduce in DeepLC prediction time)
Pull Request -
State: closed - Opened by markmipt almost 2 years ago
#48 - Error when using unmodified peptide to train and using modified peptides to test
Issue -
State: closed - Opened by WeiqiangChen almost 2 years ago
- 7 comments
#47 - psm_utils integration and code refactoring
Pull Request -
State: closed - Opened by RalfG almost 2 years ago
#46 - error using https://iomics.ugent.be/deeplc/
Issue -
State: closed - Opened by WeiqiangChen about 2 years ago
- 3 comments
#45 - psm_utils integration and code refract
Pull Request -
State: closed - Opened by RobbinBouwmeester about 2 years ago
#44 - How to convert peptide modifications of maxquant output file to MS2PIP-style
Issue -
State: closed - Opened by lbwfff about 2 years ago
- 5 comments
#43 - Make `gooey` an optional dependency
Pull Request -
State: closed - Opened by RalfG over 2 years ago
Labels: GUI
#42 - New GUI using Gooey, PyInstaller, and Inno Setup
Pull Request -
State: closed - Opened by RalfG over 2 years ago
Labels: enhancement, GUI
#41 - Fix default model selection
Pull Request -
State: closed - Opened by caetera over 2 years ago
#40 - The last of default models is selected as the best one
Issue -
State: closed - Opened by caetera over 2 years ago
- 4 comments
#39 - pip install on Python 3.10 not working correctly
Issue -
State: closed - Opened by levitsky over 2 years ago
- 9 comments
#38 - add scikit-learn dependency
Pull Request -
State: closed - Opened by paretje over 2 years ago
#37 - scikit-learn / sklearn missing from dependency list
Issue -
State: closed - Opened by RalfG over 2 years ago
- 2 comments
Labels: dependencies
#36 - Deeplc docker GPU support
Issue -
State: closed - Opened by Hendricks27 over 2 years ago
- 2 comments
#35 - Use importlib to get installed version
Pull Request -
State: closed - Opened by RalfG almost 3 years ago
#34 - negative retention times
Issue -
State: closed - Opened by Seb-Leb almost 3 years ago
- 4 comments
#33 - Streamlit webapp updates
Pull Request -
State: closed - Opened by RalfG about 3 years ago
Labels: Streamlit Web Server
#32 - use logger instead of logging
Pull Request -
State: closed - Opened by paretje over 3 years ago
#31 - Predictions are slow when library is not full
Issue -
State: closed - Opened by markmipt over 3 years ago
- 3 comments
#30 - Fix Streamlit container tags yaml formatting
Pull Request -
State: closed - Opened by RalfG over 3 years ago
Labels: bug, packaging, Streamlit Web Server
#29 - Support Python 3.9
Pull Request -
State: closed - Opened by paretje over 3 years ago
#28 - Bump commons-io from 2.6 to 2.7 in /deeplc_gui
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#27 - Add link to web application to README.md
Pull Request -
State: closed - Opened by RalfG over 3 years ago
#26 - Minor updates to streamlit web server
Pull Request -
State: closed - Opened by RalfG over 3 years ago
Labels: enhancement, Streamlit Web Server
#25 - Minor improvements and fixes to streamlit webserver
Pull Request -
State: closed - Opened by RalfG over 3 years ago
Labels: enhancement, Streamlit Web Server
#24 - Streamlit webserver improvements and deployment fixes
Pull Request -
State: closed - Opened by RalfG over 3 years ago
Labels: enhancement, packaging, Streamlit Web Server
#23 - First fully functional web server version
Pull Request -
State: closed - Opened by RalfG over 3 years ago
- 1 comment
Labels: enhancement, packaging, Streamlit Web Server
#22 - Initial streamlit webserver implementation
Pull Request -
State: closed - Opened by RalfG over 3 years ago
Labels: enhancement, packaging, Streamlit Web Server
#21 - What is the unit of tr: retention time (only required for calibration)?
Issue -
State: closed - Opened by chinmayaNK22 over 3 years ago
- 2 comments
#20 - DeepLC CPU vs GPU performance
Issue -
State: closed - Opened by markmipt over 3 years ago
- 5 comments
#19 - DeepLC (tensorflow) does not seem to obey num_jobs
Issue -
State: closed - Opened by RalfG over 3 years ago
- 2 comments
#18 - Unpin/relax tensorflow/scipy/numpy requirements
Pull Request -
State: closed - Opened by RalfG over 3 years ago
Labels: packaging
#17 - Bioconda package autobump has some issues
Issue -
State: closed - Opened by RalfG over 3 years ago
- 1 comment
Labels: packaging
#16 - DeepLC as a docker image
Issue -
State: closed - Opened by MarcIsak almost 4 years ago
- 2 comments
Labels: question
#15 - Raise `TypeError: object of type 'float' has no len()` for the table without modifications
Issue -
State: closed - Opened by DongElkan about 4 years ago
#14 - Skipping calibration step?
Issue -
State: closed - Opened by MarcIsak about 4 years ago
- 4 comments
#13 - Drop restriction on python 3.8
Pull Request -
State: closed - Opened by paretje over 4 years ago
- 1 comment
#12 - Possibility to retrain a model
Issue -
State: closed - Opened by cctsou over 4 years ago
- 1 comment
#11 - DeepLC 0.1.14 crashes my computer systematically when a peptide file for calibration is not supplied
Issue -
State: closed - Opened by MarcIsak over 4 years ago
- 2 comments
#10 - Blank spot after calibration
Issue -
State: closed - Opened by courcelm over 4 years ago
- 8 comments
#9 - Python 3.8 compatibility
Issue -
State: closed - Opened by paretje over 4 years ago
- 3 comments
#8 - Update README.md
Pull Request -
State: closed - Opened by RalfG over 4 years ago
#7 - Allow pandas v1
Pull Request -
State: closed - Opened by RalfG over 4 years ago
#6 - Fix running DeepLC from multiprocessing environment
Pull Request -
State: closed - Opened by paretje over 4 years ago
#5 - New version - fixed no models passed
Pull Request -
State: closed - Opened by RobbinBouwmeester over 4 years ago
#4 - Ensemble support
Pull Request -
State: closed - Opened by RobbinBouwmeester over 4 years ago
#3 - Move to Pypi package structure
Pull Request -
State: closed - Opened by RalfG almost 5 years ago
#2 - Small fixes for external usage
Pull Request -
State: closed - Opened by RalfG almost 5 years ago
#1 - Gui
Pull Request -
State: closed - Opened by RobbinBouwmeester almost 5 years ago