compbiocore/refchef issues and pull requests

#54 - cleaning up the json parsing code in get_full_menu

Pull Request - State: closed - Opened by JRWallace 3 months ago

#53 - merge master into dev

Pull Request - State: closed - Opened by JRWallace 3 months ago

#52 - Update table_utils.py

Pull Request - State: closed - Opened by JRWallace 3 months ago

#51 - Update table_utils.py

Pull Request - State: closed - Opened by JRWallace 3 months ago

#50 - Update table_utils.py

Pull Request - State: closed - Opened by JRWallace over 1 year ago

#49 - Update table_utils.py

Pull Request - State: closed - Opened by JRWallace over 1 year ago

#48 - Develop

Pull Request - State: closed - Opened by JRWallace over 2 years ago

#47 - Similar to indexing - add functionality to have modified versions of the same primary ref

Issue - State: open - Opened by JRWallace over 4 years ago

#46 - md5sum check

Issue - State: open - Opened by JRWallace over 4 years ago

#45 - Add test to check for redundant references

Issue - State: open - Opened by JRWallace over 4 years ago

#44 - git revert functionality

Issue - State: open - Opened by JRWallace almost 5 years ago

#43 - BWA and Bowtie2 indexes have the same UUID as the primary reference in some cases.

Issue - State: open - Opened by JRWallace almost 5 years ago

#42 - refchef-cook reads the entire master.yaml

Issue - State: open - Opened by JRWallace almost 5 years ago

#41 - Develop

Pull Request - State: closed - Opened by fernandogelin about 5 years ago

#40 - adding a new.yaml to master.yaml is not appending the master.yaml with the new keys

Issue - State: closed - Opened by JRWallace about 5 years ago - 1 comment

#39 - refchef-serve returns a 500 internal server error

Issue - State: closed - Opened by JRWallace about 5 years ago

#38 - Docs update joselynn

Pull Request - State: closed - Opened by JRWallace about 5 years ago

#37 - Develop

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#36 - Docs update joselynn

Pull Request - State: closed - Opened by JRWallace over 5 years ago

#35 - problems with more than 1 index file

Issue - State: closed - Opened by JRWallace over 5 years ago - 1 comment

#34 - Develop

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#33 - docs(usage): added more details and examples of usage

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#32 - conda install does not work (pip install is fine).

Issue - State: closed - Opened by JRWallace over 5 years ago

#31 - Issues with refchef-menu c.uuid

Issue - State: closed - Opened by JRWallace over 5 years ago - 1 comment

#30 - What is cfg.yaml proper format?

Issue - State: closed - Opened by JRWallace over 5 years ago - 2 comments

#29 - refchef-view and standardized metadata should follow genbank metadata

Issue - State: open - Opened by aguang over 5 years ago - 1 comment