Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / compbiocore/VariantVisualization.jl issues and pull requests

#119 - Html visualization not working!

Issue - State: open - Opened by aa-samad 5 months ago - 1 comment

#118 - ERROR: LoadError: KeyError: key "1" not found

Issue - State: open - Opened by MitoSri about 1 year ago

#116 - Precompiling VariantVisualization errror

Issue - State: open - Opened by charbel2998 over 1 year ago

#115 - Error when using the jupyter notebook

Issue - State: open - Opened by venkatk89 over 1 year ago

#114 - Does viva only work with human data?

Issue - State: open - Opened by yh1126611 over 1 year ago

#113 - ERROR: LoadError: ArgumentError: invalid base 10 digit '_'

Issue - State: open - Opened by mglgc over 1 year ago - 1 comment

#112 - Cannot install on Mac M2

Issue - State: open - Opened by evo-eco-gen almost 2 years ago - 2 comments

#110 - Issue running viva on Ubuntu

Issue - State: open - Opened by frankiefattorini about 2 years ago - 4 comments

#109 - ArgumentError: invalid base 10 digit '_' in "6_ssto_hap7"

Issue - State: open - Opened by KitHub-NK about 2 years ago - 2 comments

#108 - Not open my vcf file?

Issue - State: open - Opened by Gon1976 over 2 years ago - 20 comments

#107 - LoadError: KeyError: key "GT" not found

Issue - State: open - Opened by marciomagrini over 3 years ago - 1 comment

#105 - failed with GATK output

Issue - State: open - Opened by lmanchon over 3 years ago - 2 comments

#104 - Update README.md

Pull Request - State: closed - Opened by gtollefson over 3 years ago

#103 - ERROR: LoadError: GeneticVariation.VCF.Reader

Issue - State: open - Opened by ionicbond2005 over 3 years ago - 2 comments

#102 - IOError: mkdir: no such file or directory (ENOENT)

Issue - State: closed - Opened by ajandria over 3 years ago - 2 comments

#101 - ERROR: LoadError: Unexpected end of input

Issue - State: open - Opened by tuh00621 over 3 years ago - 3 comments

#100 - jupiter notebook

Issue - State: open - Opened by ibseq over 3 years ago - 1 comment

#98 - LoadError: GeneticVariation.VCF.Reader file format

Issue - State: open - Opened by nmhawkey almost 4 years ago - 1 comment

#97 - Method Error: rename!

Issue - State: open - Opened by MrtByz almost 4 years ago - 3 comments

#96 - Error while running VIVA with docker

Issue - State: open - Opened by dukelheit almost 4 years ago - 1 comment

#95 - ERROR: LoadError: GeneticVariation.VCF.Reader

Issue - State: open - Opened by Monete almost 4 years ago - 7 comments

#94 - LoadError: GeneticVariation.VCF.Reader

Issue - State: closed - Opened by Monete almost 4 years ago - 3 comments

#93 - Unable to automatically install 'MbedTLS' toml'

Issue - State: open - Opened by Caro-Ca about 4 years ago - 1 comment

#92 - LoadError: ORCA not installed properly. Please call `Pkg.build("ORCA")

Issue - State: open - Opened by vmkalbskopf about 4 years ago - 1 comment

#91 - ERROR: LoadError: ArgumentError: column name :0.0 not found in the data frame

Issue - State: closed - Opened by mjmontague over 4 years ago - 9 comments

#90 - Error in loading VCF file provide by Gubbins

Issue - State: open - Opened by Nilad over 4 years ago - 2 comments

#89 - Install TagBot as a GitHub Action

Pull Request - State: open - Opened by JuliaTagBot over 4 years ago

#88 - ERROR: LoadError: ArgumentError

Issue - State: closed - Opened by Asoorni over 4 years ago - 4 comments

#87 - Question about maximum VCF file size

Issue - State: closed - Opened by jhchung over 4 years ago - 2 comments

#86 - Error while running test.VCF

Issue - State: closed - Opened by willemdek11 almost 5 years ago - 2 comments

#85 - Cannot complete step 2 of installation

Issue - State: closed - Opened by jasiozaucha almost 5 years ago - 5 comments

#84 - cannot install without root permission. Cannot symlink to "/usr/local/bin"

Issue - State: open - Opened by pescobar almost 5 years ago - 4 comments

#83 - difficulty installing and using VIVA

Issue - State: closed - Opened by helbacsb almost 5 years ago - 14 comments

#82 - Install fails due to insufficient permissions in /usr/local/bin

Issue - State: open - Opened by pikabika almost 5 years ago - 2 comments

#81 - How to install viva in hpc

Issue - State: closed - Opened by Kalpi-ds almost 5 years ago - 4 comments

#80 - Error building VariantVisualization

Issue - State: closed - Opened by dridk almost 5 years ago - 3 comments

#79 - Update README.md

Pull Request - State: closed - Opened by dridk almost 5 years ago - 1 comment

#78 - refactor(reviseVersionInProject.TomlToBe4.1InsteadOf4.2ToAvoidMissing…

Pull Request - State: closed - Opened by gtollefson about 5 years ago

#77 - fix(FixedLabellingOfTrait1AndTrait2.ColorsWereReversedInLegend.):

Pull Request - State: closed - Opened by gtollefson about 5 years ago
Labels: bug

#76 - updatePatchVersionAndRemoveRepeatedSectionInReadme.Md

Pull Request - State: closed - Opened by gtollefson about 5 years ago
Labels: documentation

#75 - Update filtering_vcf.md

Pull Request - State: closed - Opened by alperuzun about 5 years ago

#74 - Update installation.md

Pull Request - State: closed - Opened by alperuzun about 5 years ago

#73 - Update index.md

Pull Request - State: closed - Opened by alperuzun about 5 years ago

#72 - fix: remove package calls from viva script

Pull Request - State: closed - Opened by fernandogelin about 5 years ago

#71 - fix(build): reset and add rm again

Pull Request - State: closed - Opened by fernandogelin about 5 years ago

#70 - fix(build): rm symlink before creating a new one to avoid break

Pull Request - State: closed - Opened by fernandogelin about 5 years ago

#69 - docs(readme): update readme

Pull Request - State: closed - Opened by fernandogelin about 5 years ago

#68 - Develop

Pull Request - State: closed - Opened by fernandogelin about 5 years ago

#67 - Fix compilation errors and rewrite docs

Pull Request - State: closed - Opened by gtollefson about 5 years ago
Labels: bug, documentation

#66 - Include instructions on how to add Julia bins to windows path variable

Pull Request - State: closed - Opened by gtollefson about 5 years ago

#65 - VIVA.ipynb

Pull Request - State: closed - Opened by gtollefson about 5 years ago

#64 - Update docs for Docker

Pull Request - State: closed - Opened by gtollefson about 5 years ago

#63 - Update version number for registrator

Pull Request - State: closed - Opened by gtollefson about 5 years ago

#62 - Remove Pkg.activate(@__DIR__) from viva script

Pull Request - State: closed - Opened by gtollefson about 5 years ago

#61 - Develop

Pull Request - State: closed - Opened by gtollefson about 5 years ago - 2 comments
Labels: bug, enhancement, improve code, documentation

#60 - docs(clarifyDocsAndAddDockerInstallationToReadme.Md): add docker inst…

Pull Request - State: closed - Opened by gtollefson about 5 years ago

#59 - New feature and bug fixes

Pull Request - State: closed - Opened by gtollefson about 5 years ago
Labels: bug, enhancement

#58 - docs(docker): add docs on how to use docker images

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#57 - Develop

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#56 - add "." to geno_dict()

Issue - State: closed - Opened by gtollefson over 5 years ago - 1 comment
Labels: bug

#55 - Fix header formatting in examples

Pull Request - State: closed - Opened by gtollefson over 5 years ago

#53 - Fix sample labels when select columns, docs fixes

Pull Request - State: closed - Opened by gtollefson over 5 years ago
Labels: bug

#52 - fix(release):

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#51 - Develop

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#50 - Fixed bug in notebook and in jupyer_main function

Pull Request - State: closed - Opened by gtollefson over 5 years ago
Labels: bug

#46 - Replaced UUID with METADATA.jl compat UUID

Pull Request - State: closed - Opened by gtollefson over 5 years ago

#45 - Fix init.jl

Pull Request - State: closed - Opened by gtollefson over 5 years ago

#44 - Minor docs fixes

Pull Request - State: closed - Opened by gtollefson over 5 years ago
Labels: documentation

#43 - Develop

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#42 - MkDocs

Pull Request - State: closed - Opened by fernandogelin over 5 years ago

#41 - compiled binary files

Issue - State: closed - Opened by flystar233 over 5 years ago - 10 comments
Labels: question

#40 - Reindex repo url after repo name change - upload google ownership verification marker

Pull Request - State: closed - Opened by gtollefson over 5 years ago
Labels: bug

#39 - Issue warning if metadata matrix is improperly formatted

Issue - State: open - Opened by gtollefson over 5 years ago
Labels: enhancement

#38 - Add hover labels with chr position and value and sample to scatter plots

Issue - State: open - Opened by gtollefson over 5 years ago
Labels: enhancement

#37 - Add horizontal dividing lines between metadata attribute rows

Issue - State: open - Opened by gtollefson over 5 years ago
Labels: enhancement

#36 - move alias generator destination from .bashrc to .bash_profile

Issue - State: open - Opened by gtollefson over 5 years ago - 1 comment

#35 - add "chromosome" as label on y axis when use y axis label option chromosomes

Issue - State: open - Opened by gtollefson over 5 years ago
Labels: enhancement

#34 - Insert VIVA logo into Jupiter notebook

Issue - State: open - Opened by gtollefson over 5 years ago
Labels: enhancement

#33 - Docs fixes

Pull Request - State: closed - Opened by gtollefson over 5 years ago
Labels: documentation

#28 - Add complete documentation, minor code fixes

Pull Request - State: closed - Opened by gtollefson over 5 years ago
Labels: documentation

#27 - siglist vcf index function

Issue - State: closed - Opened by gtollefson almost 6 years ago
Labels: enhancement

#26 - optimize sig list using in()

Issue - State: closed - Opened by gtollefson almost 6 years ago
Labels: enhancement

#25 - exception handler for no variants

Issue - State: open - Opened by gtollefson almost 6 years ago
Labels: enhancement

#23 - set zauto=false in dp_heatmap functions.

Issue - State: closed - Opened by gtollefson almost 6 years ago
Labels: bug

#22 - Resolved a group of issues

Pull Request - State: closed - Opened by gtollefson almost 6 years ago - 1 comment
Labels: bug

#21 - restore X on hover label and case/control

Issue - State: closed - Opened by gtollefson almost 6 years ago
Labels: bug

#20 - X not included in vcf record pos = "X" post filtering

Issue - State: closed - Opened by gtollefson almost 6 years ago
Labels: bug

#19 - fix -r chr1:400-5000 when chr is format 'chr1' in vcf

Issue - State: closed - Opened by gtollefson almost 6 years ago
Labels: bug

#17 - allow grouping samples in '--avg_dp samples'

Issue - State: closed - Opened by gtollefson almost 6 years ago

#16 - Update notebook main function

Issue - State: closed - Opened by gtollefson almost 6 years ago
Labels: bug