common-workflow-language/cwlviewer issues and pull requests

#568 - Upgrading to Spring Boot 3

Pull Request - State: closed - Opened by kinow over 1 year ago - 7 comments

#424 - Intermittent errors with CWL Viewer

Issue - State: closed - Opened by kinow over 2 years ago - 14 comments

#327 - Ft docs

Pull Request - State: open - Opened by oceenachi almost 4 years ago - 3 comments

#323 - #172 error messages should state version of cwltool being used

Pull Request - State: open - Opened by oceenachi almost 4 years ago - 5 comments

#103 - support output from cwltool's `--pack`

Issue - State: closed - Opened by mr-c almost 8 years ago - 16 comments

#100 - Add generic interface for retrieving workflows

Issue - State: open - Opened by MarkRobbo almost 8 years ago - 3 comments
Labels: enhancement

#99 - correctly draw graph when a workflow level input & output share the same name

Issue - State: closed - Opened by mr-c almost 8 years ago - 4 comments
Labels: bug

#98 - Use as command line tool to generate png/svg/dot ?

Issue - State: closed - Opened by astewart-twist almost 8 years ago - 6 comments
Labels: ready

#97 - Change to footer to update year and correct typo

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#96 - Support user defined schemas

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement, ready

#95 - Addition of Unit Testing

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#94 - Support inline tools in `run` parameters

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement, ready

#93 - Parsing of `run` parameters and colouring/linking to nested workflows

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#92 - Prevent steps being assumed default even when they have source

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#91 - Allow the use of the dot character in workflow IDs

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#90 - Dots in the ID of workflows cause MongoDB error

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: bug

#89 - Reduce complexity of recursive selection

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#88 - Support for xdot format download for workflows

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#87 - Fix broken link to workflow page

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#86 - Fix to support null path values

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#85 - Support xdot format output

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement

#84 - Add dropdown for png download option

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#83 - Add download button for the png version of graph image

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement

#82 - Add selection to the fullscreen graph

Issue - State: open - Opened by MarkRobbo almost 8 years ago
Labels: enhancement, help wanted

#81 - Empty path produces URLs with 'null' appended

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: bug

#80 - Add hover and selection of graph elements

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#79 - Correct external referencing of resources to use URI format in RO

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#78 - File size limits

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#77 - Regeneration of deleted RO bundles

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#76 - RO bundle files being deleted by tmpwatch or otherwise

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: bug

#75 - Remove trailing slashes from submitted URLs

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#74 - retrievedFrom/By/On for whole workflow bundle is not semantically correct

Issue - State: open - Opened by MarkRobbo almost 8 years ago
Labels: bug

#73 - Trailing slashes are counted as a different path for directories

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: bug

#72 - Research Object generation strategy for single files

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement

#71 - Allow URLs to particular files in a Github directory

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#70 - Display EDAM Ontology information

Issue - State: closed - Opened by mr-c almost 8 years ago
Labels: enhancement, ready

#69 - Twitter summary card support

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#68 - Add workflow discovery based on indegree of run params

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#67 - Override automatic workflow detection within a directory

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement

#66 - Delete GraphViz images from cache when deleting a workflow

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#65 - Style changes

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#64 - Fix maximum width of image column on /workflows

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#63 - Page for listing all workflows

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#62 - Add extra properties to Research Object manifests

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#61 - Parse DockerRequirement and add DockerHub link to page

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago - 1 comment

#60 - Fullscreen button for graph

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#59 - Show info message in the case of an empty table

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#58 - Empty tables still show the table header

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement

#57 - Add full screen button to workflow graph

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement

#56 - Input or Output being named the same as a step

Issue - State: closed - Opened by MarkRobbo almost 8 years ago - 1 comment
Labels: invalid, wontfix

#55 - Cache for Graphviz images is not cleared when workflows are updated

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: bug

#54 - Add oauth support

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#53 - Improved caching

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#52 - Add support for ArrayNode in/out representation

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#51 - Swap to serverside GraphViz rendering

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago - 1 comment

#50 - Add custom event handlers for mobile pinch/drag support on graphs

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement

#49 - Fix for Github blog URL not being set causing NullPointerException

Pull Request - State: closed - Opened by MarkRobbo almost 8 years ago

#48 - Caching strategy based on commit ID

Issue - State: closed - Opened by MarkRobbo almost 8 years ago
Labels: enhancement

#47 - Download image is oddly cropped

Issue - State: closed - Opened by egpbos almost 8 years ago - 2 comments
Labels: bug

#46 - error with NCI-GDC workflow

Issue - State: closed - Opened by mr-c about 8 years ago - 4 comments
Labels: bug

#45 - Add CWL header image and link to it internally

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#44 - Add quotes to distinguish String default values

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#43 - Add suggested workflows from cwl/workflows repository

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#42 - Give suggestions for workflows to parse on the main page

Issue - State: closed - Opened by MarkRobbo about 8 years ago

#41 - Distinguish String defaults from file default values

Issue - State: closed - Opened by MarkRobbo about 8 years ago

#40 - Add retrievedFrom with Github link to Research Object Bundle

Issue - State: closed - Opened by MarkRobbo about 8 years ago
Labels: enhancement

#39 - Drilldowns into workflows/command line tools run by steps

Issue - State: open - Opened by MarkRobbo about 8 years ago
Labels: enhancement

#38 - Highlighting steps in both graph/table when one is clicked

Issue - State: closed - Opened by MarkRobbo about 8 years ago
Labels: enhancement

#37 - Parse requirements and display in the application

Issue - State: closed - Opened by MarkRobbo about 8 years ago - 1 comment
Labels: enhancement

#36 - V1 step parsing

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#35 - Remove hash from start of IDs to support draft-2 ID/source notation

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#34 - Step parsing draft-3

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#33 - Permalinks

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#32 - Add AJAX loading for research object bundle download

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#31 - Not showing all the outputs of a workflow?

Issue - State: closed - Opened by mr-c about 8 years ago - 2 comments

#30 - Internationalise date format

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#29 - Permalinks / URI format

Issue - State: closed - Opened by stain about 8 years ago - 3 comments

#28 - Internationalize shown date format

Issue - State: closed - Opened by stain about 8 years ago - 1 comment

#27 - Add persistent workflow pages using MongoDB

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#26 - Display Github link and when the workflow was downloaded

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#25 - Hotfix arraytypes

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#24 - Configurable path for research objects

Issue - State: closed - Opened by stain about 8 years ago

#23 - Does not correctly parse some expressions of array types for inputs

Issue - State: closed - Opened by MarkRobbo about 8 years ago
Labels: bug

#22 - Convert footer to use bootstrap styling

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#21 - Workflow page does not list origin information

Issue - State: closed - Opened by MarkRobbo about 8 years ago
Labels: enhancement

#20 - Visualisation

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#19 - Add Research Object download to page

Issue - State: closed - Opened by MarkRobbo about 8 years ago
Labels: enhancement

#18 - Caching using MongoDB

Issue - State: closed - Opened by MarkRobbo about 8 years ago
Labels: enhancement

#17 - Workflow Step Parsing

Issue - State: closed - Opened by MarkRobbo about 8 years ago
Labels: enhancement

#16 - Main workflow discovery

Issue - State: closed - Opened by MarkRobbo about 8 years ago - 2 comments
Labels: enhancement

#15 - Simple logging functionality

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#14 - DOT graph generation

Issue - State: closed - Opened by MarkRobbo about 8 years ago - 1 comment
Labels: enhancement

#13 - File Size Limits

Issue - State: closed - Opened by MarkRobbo about 8 years ago
Labels: enhancement

#12 - Set up logging for the workflows fetched

Issue - State: closed - Opened by MarkRobbo about 8 years ago

#11 - Prevent IndexOutOfBoundsException when no workflow exists

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#10 - Styling changes for uniformity with commonwl.org

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago

#9 - Repackage from org.researchobject to org.commonwl.viewer

Pull Request - State: closed - Opened by MarkRobbo about 8 years ago - 1 comment

#8 - Update copyright text

Issue - State: closed - Opened by stain about 8 years ago - 3 comments

#7 - Create Dockerfile

Issue - State: closed - Opened by stain about 8 years ago - 1 comment

#6 - Change package to org.commonwl.viewer?

Issue - State: closed - Opened by stain about 8 years ago

GitHub / common-workflow-language/cwlviewer issues and pull requests