common-workflow-language/cwlviewer issues and pull requests

#706 - Bump org.eclipse.jgit:org.eclipse.jgit from 7.2.0.202503040940-r to 7.2.1.202505142326-r

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, java

#705 - prepare to release 1.5.0

Pull Request - State: open - Opened by mr-c 3 months ago

#704 - Bump com.spotify.fmt:fmt-maven-plugin from 2.25 to 2.27

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, java

#703 - Bump org.apache.jena:jena-core from 5.3.0 to 5.4.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, java

#702 - Bump com.fasterxml.jackson.module:jackson-module-jakarta-xmlbind-annotations from 2.18.3 to 2.19.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 3 comments
Labels: dependencies, java

#701 - Bump com.fasterxml.jackson.core:jackson-core from 2.18.3 to 2.19.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, java

#700 - Bump org.testcontainers:postgresql from 1.20.6 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, java

#699 - Bump org.testcontainers:junit-jupiter from 1.20.6 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, java

#698 - Bump commons-io:commons-io from 2.18.0 to 2.19.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, java

#697 - Bump org.jacoco:jacoco-maven-plugin from 0.8.12 to 0.8.13

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, java

#692 - Fixing bytea json conversion error (update to hibernate 6, spring 3)

Pull Request - State: closed - Opened by kinow 4 months ago - 6 comments
Labels: bug

#691 - Bump org.eclipse.jgit:org.eclipse.jgit from 7.1.0.202411261347-r to 7.2.0.202503040940-r

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, java

#690 - Bump actions/cache from 4.2.2 to 4.2.3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, github_actions

#689 - Bump io.hypersistence:hypersistence-utils-hibernate-62 from 3.9.3 to 3.9.4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#688 - Bump io.hypersistence:hypersistence-utils-hibernate-62 from 3.9.2 to 3.9.3

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#687 - Bump org.liquibase:liquibase-core from 4.29.2 to 4.31.1

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#686 - Bump org.testcontainers:junit-jupiter from 1.20.5 to 1.20.6

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#685 - Bump org.testcontainers:postgresql from 1.20.5 to 1.20.6

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#684 - Bump com.fasterxml.jackson.core:jackson-core from 2.18.2 to 2.18.3

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#683 - Bump com.fasterxml.jackson.module:jackson-module-jakarta-xmlbind-annotations from 2.18.2 to 2.18.3

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#682 - Bump actions/cache from 4.2.0 to 4.2.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions

#681 - Bump org.testcontainers:junit-jupiter from 1.20.4 to 1.20.5

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#680 - Bump org.testcontainers:postgresql from 1.20.4 to 1.20.5

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java

#679 - Bump actions/cache from 4.2.0 to 4.2.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, github_actions

#678 - Bump io.hypersistence:hypersistence-utils-hibernate-62 from 3.9.1 to 3.9.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, java

#677 - gh-actions: upgrade to Ubuntu 24.04 from the deprecated 20.04

Pull Request - State: closed - Opened by mr-c 6 months ago

#676 - Bump io.hypersistence:hypersistence-utils-hibernate-62 from 3.9.0 to 3.9.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, java

#675 - Bump org.apache.jena:jena-core from 5.2.0 to 5.3.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, java

#674 - Bump org.snakeyaml:snakeyaml-engine from 2.8 to 2.9

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, java

#673 - Bump actions/cache from 4.1.2 to 4.2.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, github_actions

#672 - Bump org.eclipse.jgit:org.eclipse.jgit from 7.0.0.202409031743-r to 7.1.0.202411261347-r

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, java

#671 - ci(mergify): upgrade configuration to current format

Pull Request - State: open - Opened by mergify[bot] 8 months ago

#670 - Bump com.fasterxml.jackson.module:jackson-module-jakarta-xmlbind-annotations from 2.18.1 to 2.18.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, java

#669 - Bump com.fasterxml.jackson.core:jackson-core from 2.18.1 to 2.18.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, java

#668 - ci(mergify): upgrade configuration to current format

Pull Request - State: closed - Opened by mergify[bot] 8 months ago

#667 - Bump org.testcontainers:postgresql from 1.20.3 to 1.20.4

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, java

#666 - Bump org.testcontainers:junit-jupiter from 1.20.3 to 1.20.4

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, java

#665 - Bump commons-io:commons-io from 2.17.0 to 2.18.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, java

#664 - ERROR: operator does not exist: jsonb = bytea

Issue - State: closed - Opened by martinchapman 9 months ago - 5 comments
Labels: bug

#663 - Bump io.hypersistence:hypersistence-utils-hibernate-62 from 3.8.3 to 3.9.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, java

#662 - Bump org.liquibase:liquibase-core from 4.29.2 to 4.30.0

Pull Request - State: open - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, java

#661 - Bump com.fasterxml.jackson.core:jackson-core from 2.18.0 to 2.18.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, java

#660 - Bump com.fasterxml.jackson.module:jackson-module-jakarta-xmlbind-annotations from 2.18.0 to 2.18.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, java

#659 - Bump actions/cache from 4.1.1 to 4.1.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, github_actions

#658 - Bump org.testcontainers:junit-jupiter from 1.20.2 to 1.20.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, java

#657 - Bump org.testcontainers:postgresql from 1.20.2 to 1.20.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, java

#656 - Bump org.apache.jena:jena-core from 5.1.0 to 5.2.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, java

#655 - Bump actions/cache from 4.1.0 to 4.1.1

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, github_actions

#654 - Bump com.spotify.fmt:fmt-maven-plugin from 2.24 to 2.25

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, java

#653 - Bump actions/cache from 4.0.2 to 4.1.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, github_actions

#652 - Bump org.testcontainers:postgresql from 1.20.1 to 1.20.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, java

#651 - Bump org.testcontainers:junit-jupiter from 1.20.1 to 1.20.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, java

#650 - Bump io.hypersistence:hypersistence-utils-hibernate-62 from 3.8.2 to 3.8.3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, java

#649 - Remove jakarta-persistence-api, defined in Spring Boot (was: build(deps): bump jakarta.persistence:jakarta.persistence-api from 3.1.0 to 3.2.0)

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, java

#648 - build(deps): bump com.fasterxml.jackson.module:jackson-module-jakarta-xmlbind-annotations from 2.17.2 to 2.18.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, java

#647 - Create cnvkit_coverage.cwl

Pull Request - State: closed - Opened by wanghang-github 10 months ago - 1 comment

#646 - Create Optimized_CNVkit_analysis _workflow.cwl

Pull Request - State: closed - Opened by wanghang-github 10 months ago - 1 comment

#645 - build(deps): bump com.fasterxml.jackson.core:jackson-core from 2.17.2 to 2.18.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, java

#644 - build(deps): bump org.springframework.boot:spring-boot-starter-parent from 2.7.18 to 3.0.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, java

#643 - build(deps): bump commons-io:commons-io from 2.16.1 to 2.17.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, java

#642 - build(deps): bump org.snakeyaml:snakeyaml-engine from 2.7 to 2.8

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, java

#641 - build(deps): bump org.eclipse.jgit:org.eclipse.jgit from 6.6.1.202309021850-r to 7.0.0.202409031743-r

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, java

#640 - build(deps): bump org.liquibase:liquibase-core from 4.29.1 to 4.29.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, java

#639 - build(deps): bump com.spotify.fmt:fmt-maven-plugin from 2.23 to 2.24

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, java

#638 - build(deps): bump org.apache.commons:commons-compress from 1.27.0 to 1.27.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, java

#637 - build(deps): bump org.apache.commons:commons-compress from 1.26.2 to 1.27.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, java

#636 - build(deps-dev): bump org.testcontainers:postgresql from 1.20.0 to 1.20.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, java

#635 - build(deps): bump org.liquibase:liquibase-core from 4.29.0 to 4.29.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, java

#634 - build(deps-dev): bump org.testcontainers:junit-jupiter from 1.20.0 to 1.20.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, java

#633 - build(deps): bump org.liquibase:liquibase-core from 4.28.0 to 4.29.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#632 - build(deps): bump org.apache.jena:jena-core from 5.0.0 to 5.1.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#631 - build(deps-dev): bump org.testcontainers:postgresql from 1.19.8 to 1.20.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#630 - build(deps-dev): bump org.testcontainers:junit-jupiter from 1.19.8 to 1.20.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#629 - build(deps): bump com.fasterxml.jackson.core:jackson-core from 2.17.1 to 2.17.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#628 - build(deps): bump org.apache.maven.plugins:maven-enforcer-plugin from 3.4.1 to 3.5.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies, java

#627 - build(deps): bump org.apache.commons:commons-compress from 1.26.1 to 1.26.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#626 - build(deps): bump org.liquibase:liquibase-core from 4.27.0 to 4.28.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#625 - build(deps-dev): bump org.testcontainers:postgresql from 1.19.7 to 1.19.8

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#624 - build(deps-dev): bump org.testcontainers:junit-jupiter from 1.19.7 to 1.19.8

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java

#623 - build(deps): bump com.fasterxml.jackson.core:jackson-core from 2.17.0 to 2.17.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, java